ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30d08 |
|---|---|
| Clone Library Name | barley_pub |
>NOMO2_HUMAN (Q5JPE7) Nodal modulator 2 precursor (pM5 protein 2)| Length = 1267 Score = 96.7 bits (239), Expect = 3e-20 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%) Frame = +1 Query: 109 DEIDGCGGFVEASSGLAKSRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 285 D + GCGGFV+ S+ + +YS I ++L T G +K T CAPN GY+ IP+ Sbjct: 34 DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82 Query: 286 YDKGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTGFTVSGKIV 441 YDKG F+++++ P GWS++P TV +D + C DINF FTGF+V+GK++ Sbjct: 83 YDKGDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGKVL 136
>NOMO3_HUMAN (P69849) Nodal modulator 3 precursor (pM5 protein 3)| Length = 1222 Score = 96.7 bits (239), Expect = 3e-20 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%) Frame = +1 Query: 109 DEIDGCGGFVEASSGLAKSRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 285 D + GCGGFV+ S+ + +YS I ++L T G +K T CAPN GY+ IP+ Sbjct: 34 DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82 Query: 286 YDKGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTGFTVSGKIV 441 YDKG F+++++ P GWS++P TV +D + C DINF FTGF+V+GK++ Sbjct: 83 YDKGDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGKVL 136
>NOMO1_HUMAN (Q15155) Nodal modulator 1 precursor (pM5)| Length = 1222 Score = 96.7 bits (239), Expect = 3e-20 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%) Frame = +1 Query: 109 DEIDGCGGFVEASSGLAKSRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 285 D + GCGGFV+ S+ + +YS I ++L T G +K T CAPN GY+ IP+ Sbjct: 34 DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82 Query: 286 YDKGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTGFTVSGKIV 441 YDKG F+++++ P GWS++P TV +D + C DINF FTGF+V+GK++ Sbjct: 83 YDKGDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGKVL 136
>TNR17_MOUSE (O88472) Tumor necrosis factor receptor superfamily member 17| (B-cell maturation protein) Length = 185 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Frame = +1 Query: 112 EIDGCGGFVEASSGLAKSRRASESKFDYS-DITVELCTVDGLVKESTQCAPNGYYFIPVY 288 ++DG +A + L + R + F S + TVE CT + VK + + ++ +P Sbjct: 89 QLDGSAQLDKADTELTRIRAGDDRIFPRSLEYTVEECTCEDCVKSKPKGDSDHFFPLPAM 148 Query: 289 DKGS--FVVRVKGPKGWSWKPETVPAVI 366 ++G+ V G G S P + +V+ Sbjct: 149 EEGATILVTTKTGDYGKSSVPTALQSVM 176
>RL7_DICDI (P11874) 60S ribosomal protein L7| Length = 245 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = +1 Query: 166 RRASESKFDYSDITVELCTVDGLVKESTQCAPNGYYFIPVYDKGSFVVRVKGPKGWSWKP 345 +RA + +Y E ++ + K S G +++P K +FV+R++G G S KP Sbjct: 49 KRAEKYVSEYHKTEREAIRLNRIAKNS------GTFYVPPAAKVAFVIRIRGINGVSPKP 102 Query: 346 ETV 354 V Sbjct: 103 RKV 105
>MURG_STAAW (Q8NWR4) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 356 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +1 Query: 340 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGG 456 K + + A I ++ NGNA +Q TGF + K++ +GG Sbjct: 157 KADFIGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGG 195
>MURG_STAAS (Q6G9E3) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 356 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +1 Query: 340 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGG 456 K + + A I ++ NGNA +Q TGF + K++ +GG Sbjct: 157 KADFIGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGG 195
>MURG_STAAR (Q6GGZ0) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 356 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +1 Query: 340 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGG 456 K + + A I ++ NGNA +Q TGF + K++ +GG Sbjct: 157 KADFIGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGG 195
>MURG_STAAN (P65482) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 356 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +1 Query: 340 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGG 456 K + + A I ++ NGNA +Q TGF + K++ +GG Sbjct: 157 KADFIGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGG 195
>MURG_STAAM (P65481) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 356 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +1 Query: 340 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGG 456 K + + A I ++ NGNA +Q TGF + K++ +GG Sbjct: 157 KADFIGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGG 195
>MURG_STAAC (Q5HG02) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 356 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +1 Query: 340 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGG 456 K + + A I ++ NGNA +Q TGF + K++ +GG Sbjct: 157 KADFIGATIREDLKNGNAHNGYQLTGFNENKKVLLVMGG 195
>MURG_STAHJ (Q4L6C8) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 355 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 340 KPETVPAVIDQNGCNGNADINFQFTGFTVSGKIVGAVGG 456 K + V A I Q+ GN +Q TGF S K++ +GG Sbjct: 157 KADFVGATIRQDLKEGNQSRGYQLTGFDASKKVLLVMGG 195
>RPOC_PHOLL (Q7N9A3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 28.5 bits (62), Expect = 8.9 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Frame = +1 Query: 157 AKSRRASESKFDYSDITVELCTVD--GLVKESTQCAPNGYYFIPVYDKGSFVVRVKGPKG 330 AKS S K + ELC +D G KES + P G V KG G Sbjct: 963 AKSVTNSAGKLVITSRNTELCLIDEFGRTKESYK-VPYG----AVLGKGDGETVNGGETV 1017 Query: 331 WSWKPETVPAVIDQNGCNGNADI 399 +W P T+P V + +G AD+ Sbjct: 1018 ANWDPHTMPVVSEVSGIIRFADM 1040 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,888,764 Number of Sequences: 219361 Number of extensions: 922806 Number of successful extensions: 2303 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2231 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2294 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
