ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl30d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CBIO1_TREDE (Q73R11) Putative cobalt import ATP-binding protein ... 32 0.71
2PAIR1_ORYSA (Q75RY2) Protein PAIR1 (HOMOLOGOUS PAIRING ABERRATIO... 29 7.8
3TRPA1_CAEEL (Q18297) Transient receptor potential cation channel... 29 7.8

>CBIO1_TREDE (Q73R11) Putative cobalt import ATP-binding protein cbiO 1|
          Length = 489

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 251 QVSEDVKTTFQNPASSVQNNVMQLKAVTGEDEGGTPIRDLVAVVQLVTRD 400
           Q+S+ V T FQNP +   N     + V G +  G P   L++ ++ VT D
Sbjct: 79  QLSDSVGTVFQNPRTQFFNTDTDSEIVFGLENRGLPPEQLLSRLEKVTED 128



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>PAIR1_ORYSA (Q75RY2) Protein PAIR1 (HOMOLOGOUS PAIRING ABERRATION IN RICE|
           MEIOSIS 1 protein)
          Length = 492

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 14/62 (22%)
 Frame = +2

Query: 242 RSGQVS-EDVKTTFQNPAS----------SVQNNVMQLKAVTGE---DEGGTPIRDLVAV 379
           RSGQV+ EDV+  FQ+ AS          SVQ++VMQL     E   D G   IR  +AV
Sbjct: 139 RSGQVTNEDVERKFQHLASSVHKMGMVVDSVQSDVMQLNRAMKEASLDSGS--IRQKIAV 196

Query: 380 VQ 385
           ++
Sbjct: 197 LE 198



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>TRPA1_CAEEL (Q18297) Transient receptor potential cation channel subfamily A|
           member 1 homolog
          Length = 1193

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 24/70 (34%), Positives = 31/70 (44%)
 Frame = +2

Query: 215 SRVDAPTRGRSGQVSEDVKTTFQNPASSVQNNVMQLKAVTGEDEGGTPIRDLVAVVQLVT 394
           S + +PTR     VSEDV+ T  N     QN  M + A  G  E    ++   A +  V 
Sbjct: 427 SALKSPTRNTLRIVSEDVRRTMVNMVDRDQNTPMHIVASNGYLEMMQLLQKHGASITQVN 486

Query: 395 RDACASETAL 424
            D    ETAL
Sbjct: 487 ED---EETAL 493


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,968,172
Number of Sequences: 219361
Number of extensions: 918904
Number of successful extensions: 2711
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2711
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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