ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl30d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DAP2_YEAST (P18962) Dipeptidyl aminopeptidase B (EC 3.4.14.-) (D... 30 2.8
2CUBN_RAT (O70244) Cubilin precursor (Intrinsic factor-cobalamin ... 29 8.1

>DAP2_YEAST (P18962) Dipeptidyl aminopeptidase B (EC 3.4.14.-) (DPAP B) (YSCV)|
          Length = 818

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = +1

Query: 268 KGFHHLPRSFVAALGLEDYLLP--SFNCCSLA----GDCILLKSFELLIKSPRNTGFDAT 429
           K  +HL ++ V    LEDY +P  SF   +L     G  IL+ S+E+L        FD T
Sbjct: 530 KSLYHLEKNEVLTKILEDYAVPRKSFRELNLGKDEFGKDILVNSYEIL-----PNDFDET 584

Query: 430 **GHYAVF 453
              HY VF
Sbjct: 585 LSDHYPVF 592



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>CUBN_RAT (O70244) Cubilin precursor (Intrinsic factor-cobalamin receptor)|
            (Intrinsic factor-vitamin B12 receptor) (Glycoprotein
            280) (gp280) (460 kDa receptor)
          Length = 3623

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
 Frame = +1

Query: 205  PGPLKLGGQ-----FRSITQLAAGG--------CKGFHHLPRSFVAALGLEDYLLPSFNC 345
            PGP++  G+     F S T +A  G        C G+ H  R  + +    D  LP+ NC
Sbjct: 2059 PGPIRSTGEYMYIRFTSDTSVAGTGFNASFHKSCGGYLHADRGVITSPKYPDTYLPNLNC 2118


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,024,949
Number of Sequences: 219361
Number of extensions: 821982
Number of successful extensions: 1679
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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