ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30d02 |
|---|---|
| Clone Library Name | barley_pub |
>PP1R8_MOUSE (Q8R3G1) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1 regulatory inhibitor subunit 8) Length = 351 Score = 46.2 bits (108), Expect = 5e-05 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Frame = +3 Query: 270 LFGRHPD-CHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPP 428 LFGR+PD C IDH S SR H + + +R+ + DL+S HGT++ R+ P Sbjct: 50 LFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEP 103
>PP1R8_HUMAN (Q12972) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1 regulatory inhibitor subunit 8) [Includes: Activator of RNA decay (EC 3.1.4.-) (ARD-1)] Length = 351 Score = 46.2 bits (108), Expect = 5e-05 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Frame = +3 Query: 270 LFGRHPD-CHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPP 428 LFGR+PD C IDH S SR H + + +R+ + DL+S HGT++ R+ P Sbjct: 50 LFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEP 103
>PP1R8_BOVIN (Q28147) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1, regulatory inhibitor subunit 8) Length = 351 Score = 46.2 bits (108), Expect = 5e-05 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Frame = +3 Query: 270 LFGRHPD-CHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPP 428 LFGR+PD C IDH S SR H + + +R+ + DL+S HGT++ R+ P Sbjct: 50 LFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEP 103
>NADAP_HUMAN (Q9BWU0) Kanadaptin (Kidney anion exchanger adapter protein)| (Solute carrier family 4 anion exchanger member 1 adapter protein) (Lung cancer oncogene 3 protein) Length = 796 Score = 43.9 bits (102), Expect = 2e-04 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 9/62 (14%) Frame = +3 Query: 270 LFGRHPDCHVLIDHPSVSRRHLEVR---------CKRRQRRITVTDLSSVHGTWVSGQRI 422 LFGR C V ++HPSVSR H ++ C + DL S HGT+++ RI Sbjct: 190 LFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRI 249 Query: 423 PP 428 PP Sbjct: 250 PP 251
>Y1858_MYCBO (P64898) Hypothetical protein Mb1858| Length = 162 Score = 42.4 bits (98), Expect = 7e-04 Identities = 19/49 (38%), Positives = 31/49 (63%) Frame = +3 Query: 276 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRI 422 GRHPD + +D +VSRRH E R + + V D+ S++GT+V+ + + Sbjct: 80 GRHPDSDIFLDDVTVSRRHAEFRLENNE--FNVVDVGSLNGTYVNREPV 126
>Y1827_MYCTU (P64897) Hypothetical protein Rv1827/MT1875| Length = 162 Score = 42.4 bits (98), Expect = 7e-04 Identities = 19/49 (38%), Positives = 31/49 (63%) Frame = +3 Query: 276 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRI 422 GRHPD + +D +VSRRH E R + + V D+ S++GT+V+ + + Sbjct: 80 GRHPDSDIFLDDVTVSRRHAEFRLENNE--FNVVDVGSLNGTYVNREPV 126
>YOT2_CAEEL (P34648) Hypothetical protein ZK632.2| Length = 710 Score = 37.7 bits (86), Expect = 0.016 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Frame = +3 Query: 267 VLFGR-HPDCHVLIDHPSVSRRHLEVRCKRRQRRIT-----VTDLSSVHGTWVSGQRIPP 428 V+ GR P C +L++HPS+SR H ++ + T + +L S HG+ ++ +R+PP Sbjct: 108 VVIGRIKPGCDLLMEHPSISRYHCILQYGNDKMSKTGKGWHIFELGSTHGSRMNKKRLPP 167 Query: 429 TRW 437 ++ Sbjct: 168 KQY 170
>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1| Length = 2171 Score = 36.2 bits (82), Expect = 0.048 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 276 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWV 407 GR PDC V + PS+S++H E+ + + D S++GT + Sbjct: 57 GRMPDCSVALPFPSISKQHAEIEILAWDKAPILRDCGSLNGTQI 100
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear| factor with BRCT domains 1) Length = 2089 Score = 36.2 bits (82), Expect = 0.048 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 276 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWV 407 GR PDC V + PS+S++H E+ + + D S++GT + Sbjct: 57 GRMPDCSVALPFPSISKQHAEIEILAWDKAPILRDCGSLNGTQI 100
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 36.2 bits (82), Expect = 0.048 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 276 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWV 407 GR PDC V + PS+S++H E+ + + D S++GT + Sbjct: 57 GRMPDCSVALPFPSISKQHAEIEILAWDKAPILRDCGSLNGTQI 100
>MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1| Length = 1707 Score = 35.0 bits (79), Expect = 0.11 Identities = 18/62 (29%), Positives = 32/62 (51%) Frame = +3 Query: 222 GPDRDRVEEEAEDPPVLFGRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGT 401 GP+RD ++ + GR PDC V + PS+S++H + + + D S++GT Sbjct: 42 GPERDFPLYLGKN---VVGRSPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGT 98 Query: 402 WV 407 + Sbjct: 99 QI 100
>MDC1_RAT (Q5U2M8) Mediator of DNA damage checkpoint protein 1| Length = 1279 Score = 35.0 bits (79), Expect = 0.11 Identities = 18/62 (29%), Positives = 32/62 (51%) Frame = +3 Query: 222 GPDRDRVEEEAEDPPVLFGRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGT 401 GP+RD ++ + GR PDC V + PS+S++H + + + D S++GT Sbjct: 42 GPERDFPLYLGKN---VVGRSPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGT 98 Query: 402 WV 407 + Sbjct: 99 QI 100
>ABA2_LYCES (P93236) Zeaxanthin epoxidase, chloroplast precursor (EC| 1.14.13.90) Length = 669 Score = 34.7 bits (78), Expect = 0.14 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +3 Query: 285 PDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVS 410 P +++ P VS H + CK VTDL S HGTWV+ Sbjct: 574 PGKSIVLPLPQVSEMHARISCK--DGAFFVTDLRSEHGTWVT 613
>FAR10_YEAST (Q06001) Factor arrest protein 10| Length = 478 Score = 31.6 bits (70), Expect = 1.2 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +3 Query: 306 DHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRI 422 D +SR H + C ++ + DL S +GT+++GQRI Sbjct: 138 DSRVLSRNHALLSCDPLTGKVYIRDLKSSNGTFINGQRI 176
>RNFD_VIBPA (Q87MX1) Electron transport complex protein rnfD| Length = 348 Score = 31.2 bits (69), Expect = 1.5 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = +3 Query: 315 SVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPPTRWWSWWLV 455 +VS L + C++R + D S++ W+ IPP W WW++ Sbjct: 54 AVSLEALVMICRKRSPMRALRDNSAIVTAWLLAVAIPP--WSPWWII 98
>ABA2_PRUAR (O81360) Zeaxanthin epoxidase, chloroplast precursor (EC| 1.14.13.90) (PA-ZE) Length = 661 Score = 30.8 bits (68), Expect = 2.0 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Frame = +3 Query: 255 EDPPVLFGRHPD-----CHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSG-- 413 E P + G P + I P VS H + K +TDL S HGTW++ Sbjct: 554 EKNPCIIGSAPHGDVSGISIAIPKPQVSEMHARISYK--DGAFYLTDLRSEHGTWIADIE 611 Query: 414 ---QRIPP 428 R+PP Sbjct: 612 GKRYRVPP 619
>ABA2_NICPL (Q40412) Zeaxanthin epoxidase, chloroplast precursor (EC| 1.14.13.90) Length = 663 Score = 30.4 bits (67), Expect = 2.6 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = +3 Query: 285 PDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVS 410 P V+I P VS H + K VTDL S HGTW++ Sbjct: 568 PGKSVVIPLPQVSEMHARISYKGGA--FFVTDLRSEHGTWIT 607
>CDS1_SCHPO (Q09170) Serine/threonine-protein kinase cds1 (EC 2.7.11.1)| (Checkpoint kinase cds1) Length = 460 Score = 30.0 bits (66), Expect = 3.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 273 FGRHPDCHVLIDHPSVSRRHLEV 341 FGRH C V+++ P VS H E+ Sbjct: 62 FGRHKSCEVVLNGPRVSNFHFEI 84
>FTSK_ECOL6 (Q8FJC7) DNA translocase ftsK| Length = 1347 Score = 29.3 bits (64), Expect = 5.8 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = -2 Query: 470 PSCSVHQPPTPPACXWDPLARDPGPMHGGEV 378 P SV PPT P W P+ PGP G V Sbjct: 345 PVASVDVPPTQPTVAWQPV---PGPQTGEPV 372
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 29.3 bits (64), Expect = 5.8 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = +3 Query: 276 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWV 407 GR P+C V + S+S++H + + + D S++GT + Sbjct: 57 GRMPECSVALPFSSISKQHAVIEILAWNKAPVLRDCGSLNGTQI 100
>BKRB2_RAT (P25023) B2 bradykinin receptor (BK-2 receptor) (B2R)| Length = 396 Score = 29.3 bits (64), Expect = 5.8 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +3 Query: 366 ITVTDLSSVHGTWVSGQRIPPTRWWSW 446 IT L S H S P T WWSW Sbjct: 34 ITTQALGSAHNGTFSEVNCPDTEWWSW 60
>Y1895_SYNY3 (P74101) Hypothetical protein sll1895| Length = 696 Score = 28.9 bits (63), Expect = 7.6 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 8/55 (14%) Frame = +3 Query: 276 GRHPDCHVLIDHPSVSRRHLEVRCKRRQR-----RITVTDLS---SVHGTWVSGQ 416 GRHP ++I P +SRRH + K I DL S +G WV+G+ Sbjct: 26 GRHPSNTIVIPSPQISRRHATLIKKINPNLDISFHIIDGDLEGHRSRNGVWVNGE 80
>VPS64_YEAST (Q03944) Vacuolar protein sorting protein 64 (Factor arrest protein| 9) Length = 604 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +3 Query: 306 DHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRI 422 D +SR H + C +I + DL S +GT+V+G +I Sbjct: 219 DSRVLSRNHACLSCDPTSGKIYIRDLKSSNGTFVNGVKI 257
>RAD53_YEAST (P22216) Serine/threonine-protein kinase RAD53 (EC 2.7.11.1)| (Serine-protein kinase 1) Length = 821 Score = 28.9 bits (63), Expect = 7.6 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Frame = +3 Query: 273 FGRHPDCHVLIDHPS-VSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRI 422 FGR+P C + + S +S +H ++ + + D+S+ +GTW++GQ++ Sbjct: 68 FGRNPACDYHLGNISRLSNKHFQILLGE-DGNLLLNDIST-NGTWLNGQKV 116
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.5 bits (62), Expect = 9.9 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Frame = +3 Query: 186 FLNEPPTEAARRGPDRDRVEEEAEDPPVLFGRHPDCHVLIDHPSVSRRHLEVRCKRRQRR 365 FL +PP E A G R A+D V+ R D V S+S++ +R R+ Sbjct: 1189 FLPQPPQEKAHDGGRYYR----ADDANVM--RDRDLEVDTTLKSLSQQIENIRSPEGTRK 1242 Query: 366 I---TVTDLSSVHGTWVSGQ 416 T DL HG W SG+ Sbjct: 1243 NPARTCRDLKMCHGDWKSGE 1262 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,953,096 Number of Sequences: 219361 Number of extensions: 768599 Number of successful extensions: 2942 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2835 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2934 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
