ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30c07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193386.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2676 Score = 149 bits (75), Expect = 1e-32 Identities = 102/111 (91%) Strand = Plus / Plus Query: 275 cggtacgcgccggacgaccctacggtgcccaagccgtggcgcgggctggtggacggcacc 334 |||||||||||||||||||| || | |||||||||||||||||||| || ||||||||| Sbjct: 31 cggtacgcgccggacgacccgtcgctccccaagccgtggcgcgggctcgtcgacggcacc 90 Query: 335 accggctacctctactactggaatccggagaccaacgtcactcagtacgag 385 ||||||||||||||||||||||| |||||||||||| |||| ||||||||| Sbjct: 91 accggctacctctactactggaacccggagaccaacatcacccagtacgag 141
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 149 bits (75), Expect = 1e-32 Identities = 102/111 (91%) Strand = Plus / Plus Query: 275 cggtacgcgccggacgaccctacggtgcccaagccgtggcgcgggctggtggacggcacc 334 |||||||||||||||||||| || | |||||||||||||||||||| || ||||||||| Sbjct: 20518698 cggtacgcgccggacgacccgtcgctccccaagccgtggcgcgggctcgtcgacggcacc 20518757 Query: 335 accggctacctctactactggaatccggagaccaacgtcactcagtacgag 385 ||||||||||||||||||||||| |||||||||||| |||| ||||||||| Sbjct: 20518758 accggctacctctactactggaacccggagaccaacatcacccagtacgag 20518808 Score = 69.9 bits (35), Expect = 7e-09 Identities = 80/95 (84%) Strand = Plus / Minus Query: 275 cggtacgcgccggacgaccctacggtgcccaagccgtggcgcgggctggtggacggcacc 334 |||||||||||| || || ||| |||||||||||||| | ||||| | ||||||| | Sbjct: 3717220 cggtacgcgccgccagatccgacgctgcccaagccgtggagggggctcatcgacggcaac 3717161 Query: 335 accggctacctctactactggaatccggagaccaa 369 ||||| |||||||||| |||||| ||||||||||| Sbjct: 3717160 accgggtacctctacttctggaacccggagaccaa 3717126
>dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1156H12 Length = 159509 Score = 149 bits (75), Expect = 1e-32 Identities = 102/111 (91%) Strand = Plus / Plus Query: 275 cggtacgcgccggacgaccctacggtgcccaagccgtggcgcgggctggtggacggcacc 334 |||||||||||||||||||| || | |||||||||||||||||||| || ||||||||| Sbjct: 42520 cggtacgcgccggacgacccgtcgctccccaagccgtggcgcgggctcgtcgacggcacc 42579 Query: 335 accggctacctctactactggaatccggagaccaacgtcactcagtacgag 385 ||||||||||||||||||||||| |||||||||||| |||| ||||||||| Sbjct: 42580 accggctacctctactactggaacccggagaccaacatcacccagtacgag 42630
>dbj|AK122104.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125P18, full insert sequence Length = 2776 Score = 149 bits (75), Expect = 1e-32 Identities = 102/111 (91%) Strand = Plus / Plus Query: 275 cggtacgcgccggacgaccctacggtgcccaagccgtggcgcgggctggtggacggcacc 334 |||||||||||||||||||| || | |||||||||||||||||||| || ||||||||| Sbjct: 143 cggtacgcgccggacgacccgtcgctccccaagccgtggcgcgggctcgtcgacggcacc 202 Query: 335 accggctacctctactactggaatccggagaccaacgtcactcagtacgag 385 ||||||||||||||||||||||| |||||||||||| |||| ||||||||| Sbjct: 203 accggctacctctactactggaacccggagaccaacatcacccagtacgag 253
>ref|XM_550287.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2864 Score = 69.9 bits (35), Expect = 7e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 275 cggtacgcgccggacgaccctacggtgcccaagccgtggcgcgggctggtggacggcacc 334 |||||||||||| || || ||| |||||||||||||| | ||||| | ||||||| | Sbjct: 258 cggtacgcgccgccagatccgacgctgcccaagccgtggagggggctcatcgacggcaac 317 Query: 335 accggctacctctactactggaatccggagaccaa 369 ||||| |||||||||| |||||| ||||||||||| Sbjct: 318 accgggtacctctacttctggaacccggagaccaa 352
>ref|XM_550286.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2127 Score = 69.9 bits (35), Expect = 7e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 275 cggtacgcgccggacgaccctacggtgcccaagccgtggcgcgggctggtggacggcacc 334 |||||||||||| || || ||| |||||||||||||| | ||||| | ||||||| | Sbjct: 43 cggtacgcgccgccagatccgacgctgcccaagccgtggagggggctcatcgacggcaac 102 Query: 335 accggctacctctactactggaatccggagaccaa 369 ||||| |||||||||| |||||| ||||||||||| Sbjct: 103 accgggtacctctacttctggaacccggagaccaa 137
>dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0583G08 Length = 135295 Score = 69.9 bits (35), Expect = 7e-09 Identities = 80/95 (84%) Strand = Plus / Minus Query: 275 cggtacgcgccggacgaccctacggtgcccaagccgtggcgcgggctggtggacggcacc 334 |||||||||||| || || ||| |||||||||||||| | ||||| | ||||||| | Sbjct: 125700 cggtacgcgccgccagatccgacgctgcccaagccgtggagggggctcatcgacggcaac 125641 Query: 335 accggctacctctactactggaatccggagaccaa 369 ||||| |||||||||| |||||| ||||||||||| Sbjct: 125640 accgggtacctctacttctggaacccggagaccaa 125606
>dbj|AK100326.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079L21, full insert sequence Length = 2864 Score = 69.9 bits (35), Expect = 7e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 275 cggtacgcgccggacgaccctacggtgcccaagccgtggcgcgggctggtggacggcacc 334 |||||||||||| || || ||| |||||||||||||| | ||||| | ||||||| | Sbjct: 258 cggtacgcgccgccagatccgacgctgcccaagccgtggagggggctcatcgacggcaac 317 Query: 335 accggctacctctactactggaatccggagaccaa 369 ||||| |||||||||| |||||| ||||||||||| Sbjct: 318 accgggtacctctacttctggaacccggagaccaa 352
>ref|NM_111523.2| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding AT3G06480 mRNA, complete cds Length = 3605 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 344 ctctactactggaatccggagaccaacgtcactcagta 381 ||||| ||||||||||| || ||||| ||||||||||| Sbjct: 205 ctctattactggaatcctgaaaccaatgtcactcagta 242
>gb|AC011623.5|ATAC011623 Arabidopsis thaliana chromosome III BAC F24P17 genomic sequence, complete sequence Length = 86022 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 344 ctctactactggaatccggagaccaacgtcactcagta 381 ||||| ||||||||||| || ||||| ||||||||||| Sbjct: 2738 ctctattactggaatcctgaaaccaatgtcactcagta 2775
>ref|NM_121465.3| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding AT5G14610 mRNA, complete cds Length = 2661 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 341 tacctctactactggaatccggagaccaacgtcactcagtacgag 385 |||||||||| |||||||| || ||||| || |||||||||||| Sbjct: 257 tacctctacttttggaatccagaaaccaatgttactcagtacgag 301
>ref|NM_202477.1| Arabidopsis thaliana DRH1 AT3G01540 (DRH1) transcript variant AT3G01540.3 mRNA, complete cds Length = 2365 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 353 tggaatccggagaccaacgtcactcagtacgag 385 |||||||| |||||||| || |||||||||||| Sbjct: 288 tggaatcctgagaccaatgttactcagtacgag 320
>ref|NM_111020.2| Arabidopsis thaliana DRH1 AT3G01540 (DRH1) transcript variant AT3G01540.1 mRNA, complete cds Length = 2392 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 353 tggaatccggagaccaacgtcactcagtacgag 385 |||||||| |||||||| || |||||||||||| Sbjct: 318 tggaatcctgagaccaatgttactcagtacgag 350
>ref|NM_180161.1| Arabidopsis thaliana DRH1 AT3G01540 (DRH1) transcript variant AT3G01540.2 mRNA, complete cds Length = 2395 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 353 tggaatccggagaccaacgtcactcagtacgag 385 |||||||| |||||||| || |||||||||||| Sbjct: 318 tggaatcctgagaccaatgttactcagtacgag 350
>ref|NM_001035542.1| Arabidopsis thaliana DRH1 AT3G01540 (DRH1) transcript variant AT3G01540.4 mRNA, complete cds Length = 2289 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 353 tggaatccggagaccaacgtcactcagtacgag 385 |||||||| |||||||| || |||||||||||| Sbjct: 318 tggaatcctgagaccaatgttactcagtacgag 350
>gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence Length = 105543 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 353 tggaatccggagaccaacgtcactcagtacgag 385 |||||||| |||||||| || |||||||||||| Sbjct: 38025 tggaatcctgagaccaatgttactcagtacgag 37993
>gb|BT009670.1| Arabidopsis thaliana At3g01540 gene, complete cds Length = 1857 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 353 tggaatccggagaccaacgtcactcagtacgag 385 |||||||| |||||||| || |||||||||||| Sbjct: 109 tggaatcctgagaccaatgttactcagtacgag 141
>emb|AL163792.1|ATT15N1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project) Length = 86574 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 341 tacctctactactggaatccggagaccaacgtcactcagtacgag 385 |||||||||| |||||||| || ||||| || |||||||||||| Sbjct: 48281 tacctctacttttggaatccagaaaccaatgttactcagtacgag 48325
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 tgccccagatctgccgcagcg 253 ||||||||||||||||||||| Sbjct: 1694574 tgccccagatctgccgcagcg 1694554
>gb|AF462866.1|AF462866 Arabidopsis thaliana AT3g01540/F4P13_9 mRNA sequence Length = 2415 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 353 tggaatccggagaccaacgtcactcagtacgag 385 |||||||| |||||||| || |||||||||||| Sbjct: 312 tggaatcctgagaccaatgttactcagtacgag 344
>gb|AY062591.1| Arabidopsis thaliana RNA helicase, DRH1 (At3g01540; F4P13.9) mRNA, complete cds Length = 2264 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 353 tggaatccggagaccaacgtcactcagtacgag 385 |||||||| |||||||| || |||||||||||| Sbjct: 312 tggaatcctgagaccaatgttactcagtacgag 344
>gb|AF428313.1|AF428313 Arabidopsis thaliana AT3g01540/F4P13_9 mRNA, complete cds Length = 2067 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 353 tggaatccggagaccaacgtcactcagtacgag 385 |||||||| |||||||| || |||||||||||| Sbjct: 214 tggaatcctgagaccaatgttactcagtacgag 246
>gb|AY050375.1| Arabidopsis thaliana AT3g01540/F4P13_9 mRNA, complete cds Length = 2165 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 353 tggaatccggagaccaacgtcactcagtacgag 385 |||||||| |||||||| || |||||||||||| Sbjct: 312 tggaatcctgagaccaatgttactcagtacgag 344
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 aaatttaggtcaaaagaaggaaagg 144 |||||| |||||||||||||||||| Sbjct: 24260173 aaatttgggtcaaaagaaggaaagg 24260149 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 ggtcaaaagaaggaaagggaaaaac 151 |||||||||||||||| |||||||| Sbjct: 17503827 ggtcaaaagaaggaaatggaaaaac 17503851
>emb|BX823517.1|CNS0A7FC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS47ZA08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2267 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 353 tggaatccggagaccaacgtcactcagtacgag 385 |||||||| |||||||| || |||||||||||| Sbjct: 288 tggaatcctgagaccaatgttactcagtacgag 320
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 gtggacggcaccaccggctac 343 ||||||||||||||||||||| Sbjct: 340835 gtggacggcaccaccggctac 340815
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 aaatttaggtcaaaagaaggaaagg 144 |||||| |||||||||||||||||| Sbjct: 24188379 aaatttgggtcaaaagaaggaaagg 24188355 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 ggtcaaaagaaggaaagggaaaaac 151 |||||||||||||||| |||||||| Sbjct: 17458198 ggtcaaaagaaggaaatggaaaaac 17458222
>emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135793 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 aaatttaggtcaaaagaaggaaagg 144 |||||| |||||||||||||||||| Sbjct: 36947 aaatttgggtcaaaagaaggaaagg 36923
>emb|AL731763.1|CNS07YQA Oryza sativa chromosome 12, . BAC OSJNBa0090O14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129619 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 ggtcaaaagaaggaaagggaaaaac 151 |||||||||||||||| |||||||| Sbjct: 28579 ggtcaaaagaaggaaatggaaaaac 28555
>dbj|AB010259.1| Arabidopsis thaliana mRNA for DRH1, complete cds Length = 1924 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 353 tggaatccggagaccaacgtcactcagtacgag 385 |||||||| |||||||| || |||||||||||| Sbjct: 116 tggaatcctgagaccaatgttactcagtacgag 148
>gb|AC102795.28| Mus musculus chromosome 3, clone RP23-182B7, complete sequence Length = 226270 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aaaagaaggaaagggaaaaa 150 |||||||||||||||||||| Sbjct: 195205 aaaagaaggaaagggaaaaa 195224
>gb|AC110195.14| Mus musculus chromosome 3, clone RP24-291L17, complete sequence Length = 171669 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 aaaagaaggaaagggaaaaa 150 |||||||||||||||||||| Sbjct: 74454 aaaagaaggaaagggaaaaa 74435
>gb|AC131980.9| Mus musculus chromosome 1, clone RP24-170O7, complete sequence Length = 200100 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aaaagaaggaaagggaaaaa 150 |||||||||||||||||||| Sbjct: 113430 aaaagaaggaaagggaaaaa 113449
>gb|AC113600.19| Mus musculus chromosome 6, clone RP23-110A19, complete sequence Length = 212705 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 caaaagaaggaaagggaaaa 149 |||||||||||||||||||| Sbjct: 89991 caaaagaaggaaagggaaaa 89972
>gb|AC133464.11| Mus musculus chromosome 16, clone RP24-459O21, complete sequence Length = 142742 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aaaagaaggaaagggaaaaa 150 |||||||||||||||||||| Sbjct: 18586 aaaagaaggaaagggaaaaa 18605
>gb|AC121932.2| Mus musculus BAC clone RP24-205N24 from 17, complete sequence Length = 152782 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 aaaagaaggaaagggaaaaa 150 |||||||||||||||||||| Sbjct: 80762 aaaagaaggaaagggaaaaa 80743
>emb|Z98747.1|HS37J18 Human DNA sequence from clone RP1-37J18 on chromosome 1p36.2-36.3 Contains two novel genes, complete sequence Length = 131427 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 aggtcaaaagaaggaaaggg 145 |||||||||||||||||||| Sbjct: 87136 aggtcaaaagaaggaaaggg 87117
>emb|AL591898.1| Human DNA sequence from clone RP11-409K12 on chromosome 1 Contains the 5' end of the FH gene for fumarate hydratase, the 5' end of the KMO gene for kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) and a CpG island, complete sequence Length = 70011 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aaagaaggaaagggaaaaac 151 |||||||||||||||||||| Sbjct: 33826 aaagaaggaaagggaaaaac 33845
>emb|AL596382.12| Mouse DNA sequence from clone RP23-337J7 on chromosome 11, complete sequence Length = 225083 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 tcaaaagaaggaaagggaaa 148 |||||||||||||||||||| Sbjct: 129244 tcaaaagaaggaaagggaaa 129263
>gb|AC091722.3| Sus scrofa clone RP44-304F21, complete sequence Length = 165604 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 gaaaaatttaggtcaaaagaagga 140 ||||||| |||||||||||||||| Sbjct: 86115 gaaaaatgtaggtcaaaagaagga 86138
>gb|AC021311.8| Homo sapiens chromosome 8, clone RP11-697L23, complete sequence Length = 151778 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 ggcttctctgggcttgagct 65 |||||||||||||||||||| Sbjct: 82636 ggcttctctgggcttgagct 82655
>emb|CR857498.1| Pongo pygmaeus mRNA; cDNA DKFZp468H1722 (from clone DKFZp468H1722) Length = 1562 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 tactactggaatccggagac 366 |||||||||||||||||||| Sbjct: 1027 tactactggaatccggagac 1008
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 atccgcgcgcgcccttgccg 220 |||||||||||||||||||| Sbjct: 1062528 atccgcgcgcgcccttgccg 1062509
>gb|AC026701.6| Homo sapiens chromosome 5 clone CTC-547D20, complete sequence Length = 87338 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aaaagaaggaaagggaaaaa 150 |||||||||||||||||||| Sbjct: 34390 aaaagaaggaaagggaaaaa 34409
>gb|AC008525.7|AC008525 Homo sapiens chromosome 5 clone CTC-467M3, complete sequence Length = 123238 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 aaaagaaggaaagggaaaaa 150 |||||||||||||||||||| Sbjct: 20998 aaaagaaggaaagggaaaaa 20979
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 ggtgcccaagccgtggcgcgggct 321 |||| ||||||||||||||||||| Sbjct: 1391590 ggtggccaagccgtggcgcgggct 1391613
>gb|AF282854.4| Homo sapiens chromosome X clone RP11-157E12 map q28, complete sequence Length = 187411 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 caccaccggctacctctact 350 |||||||||||||||||||| Sbjct: 9236 caccaccggctacctctact 9255
>gb|AC116666.2| Homo sapiens chromosome X clone RP11-329E24 map q28, complete sequence Length = 169351 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 caccaccggctacctctact 350 |||||||||||||||||||| Sbjct: 141253 caccaccggctacctctact 141272
>gb|AF463753.1| Mus musculus strain C57BL/6J cytokine gene cluster, partial sequence Length = 9272 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 tcaaaagaaggaaagggaaa 148 |||||||||||||||||||| Sbjct: 3663 tcaaaagaaggaaagggaaa 3644
>emb|AL772311.19| Mouse DNA sequence from clone RP23-87P16 on chromosome 4, complete sequence Length = 234393 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 tacctgaagctgggcttctctggg 57 |||||||||||||||||| ||||| Sbjct: 20086 tacctgaagctgggcttcgctggg 20063
>emb|CT573031.6| Mouse DNA sequence from clone RP24-244H14 on chromosome 16, complete sequence Length = 170444 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 aaaagaaggaaagggaaaaa 150 |||||||||||||||||||| Sbjct: 856 aaaagaaggaaagggaaaaa 837
>gb|AC135859.4| Mus musculus BAC clone RP24-151D9 from 10, complete sequence Length = 182809 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aaagaaggaaagggaaaaac 151 |||||||||||||||||||| Sbjct: 78713 aaagaaggaaagggaaaaac 78694
>emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chromosome 2, complete sequence Length = 225684 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 aaaagaaggaaagggaaaaa 150 |||||||||||||||||||| Sbjct: 202822 aaaagaaggaaagggaaaaa 202803
>gb|L00585.1|TRBNDHK Trypanosoma brucei NADH:ubiquinone oxidoreductase complex I (ndhK) gene, complete cds Length = 961 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 caaaagaaggaaagggaaaa 149 |||||||||||||||||||| Sbjct: 929 caaaagaaggaaagggaaaa 910 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,256,465 Number of Sequences: 3902068 Number of extensions: 2256465 Number of successful extensions: 48119 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47779 Number of HSP's gapped (non-prelim): 340 length of query: 469 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 447 effective length of database: 17,147,199,772 effective search space: 7664798298084 effective search space used: 7664798298084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
