ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl30c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GGA3_HUMAN (Q9NZ52) ADP-ribosylation factor-binding protein GGA3... 29 7.2
2PIN6_ORYSA (Q5JLM1) Probable auxin efflux carrier component 6 (O... 29 7.2
3NQRE_CHLTR (O84283) Probable Na(+)-translocating NADH-quinone re... 28 9.4

>GGA3_HUMAN (Q9NZ52) ADP-ribosylation factor-binding protein GGA3|
           (Golgi-localized, gamma ear-containing, ARF-binding
           protein 3)
          Length = 723

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = +3

Query: 3   ETTNSPALVASPAAFSP------LPTTPDASAEPRTRPS 101
           +TTNS + V +PA   P      LP  P AS  PR+R S
Sbjct: 333 DTTNSLSSVLAPAPTPPSSGIPILPPPPQASGPPRSRSS 371



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>PIN6_ORYSA (Q5JLM1) Probable auxin efflux carrier component 6 (OsPIN6)|
          Length = 363

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 106 ATLGLVRGSAEASGVVGRGEKAAGDATRAGELVVS 2
           A +G+    AEA+   G+  +AAG A  AG +VV+
Sbjct: 159 AAIGMYVDGAEAAAAAGKDVEAAGAAAAAGTVVVA 193



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>NQRE_CHLTR (O84283) Probable Na(+)-translocating NADH-quinone reductase|
           subunit E (EC 1.6.5.-) (Na(+)-translocating NQR subunit
           E) (Na(+)-NQR subunit E) (NQR complex subunit E) (NQR-1
           subunit E)
          Length = 244

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 6   TTNSPALVASPAAFSPLPTTPDASAEPR 89
           TT+ PA V + A  SP P T  +S EP+
Sbjct: 215 TTSKPAFVTNIATDSPQPNTHSSSEEPK 242


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,080,013
Number of Sequences: 219361
Number of extensions: 514918
Number of successful extensions: 2337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2335
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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