Clone Name | bastl30c02 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | GGA3_HUMAN (Q9NZ52) ADP-ribosylation factor-binding protein GGA3... | 29 | 7.2 | 2 | PIN6_ORYSA (Q5JLM1) Probable auxin efflux carrier component 6 (O... | 29 | 7.2 | 3 | NQRE_CHLTR (O84283) Probable Na(+)-translocating NADH-quinone re... | 28 | 9.4 |
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>GGA3_HUMAN (Q9NZ52) ADP-ribosylation factor-binding protein GGA3| (Golgi-localized, gamma ear-containing, ARF-binding protein 3) Length = 723 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%) Frame = +3 Query: 3 ETTNSPALVASPAAFSP------LPTTPDASAEPRTRPS 101 +TTNS + V +PA P LP P AS PR+R S Sbjct: 333 DTTNSLSSVLAPAPTPPSSGIPILPPPPQASGPPRSRSS 371
>PIN6_ORYSA (Q5JLM1) Probable auxin efflux carrier component 6 (OsPIN6)| Length = 363 Score = 28.9 bits (63), Expect = 7.2 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -3 Query: 106 ATLGLVRGSAEASGVVGRGEKAAGDATRAGELVVS 2 A +G+ AEA+ G+ +AAG A AG +VV+ Sbjct: 159 AAIGMYVDGAEAAAAAGKDVEAAGAAAAAGTVVVA 193
>NQRE_CHLTR (O84283) Probable Na(+)-translocating NADH-quinone reductase| subunit E (EC 1.6.5.-) (Na(+)-translocating NQR subunit E) (Na(+)-NQR subunit E) (NQR complex subunit E) (NQR-1 subunit E) Length = 244 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 6 TTNSPALVASPAAFSPLPTTPDASAEPR 89 TT+ PA V + A SP P T +S EP+ Sbjct: 215 TTSKPAFVTNIATDSPQPNTHSSSEEPK 242 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,080,013 Number of Sequences: 219361 Number of extensions: 514918 Number of successful extensions: 2337 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 2200 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2335 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)