ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30b11 |
|---|---|
| Clone Library Name | barley_pub |
>NOP14_HUMAN (P78316) Probable nucleolar complex protein 14| Length = 857 Score = 65.9 bits (159), Expect = 6e-11 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 1/110 (0%) Frame = +3 Query: 144 ASADKITNKKKGKGTMEG-RNGPXXXXXXXXXXXXXERSNPFEAIWSRRKFDVLGKKRKG 320 A A K+ ++K G G R GP SNPFE +R+KF +LG+K + Sbjct: 2 AKAKKVGARRKASGAPAGARGGPAKA-----------NSNPFEVKVNRQKFQILGRKTRH 50 Query: 321 EERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRIGERDETLPEYDK 470 + SR+ A+ KR TLLKE+++ KS+VF D+R GE + + +K Sbjct: 51 DVGLPGVSRARALRKRTQTLLKEYKERDKSNVFRDKRFGEYNSNMSPEEK 100
>NOP14_MOUSE (Q8R3N1) Probable nucleolar complex protein 14| Length = 860 Score = 59.7 bits (143), Expect = 4e-09 Identities = 29/71 (40%), Positives = 45/71 (63%) Frame = +3 Query: 258 NPFEAIWSRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRIG 437 NPFE +R+KF +LG+K + + SR+ A+ KR TLLKE+++ KS+VF D+R G Sbjct: 30 NPFEVKVNRQKFQILGRKTRHDVGLPGVSRARAIRKRTQTLLKEYKERNKSNVFADKRFG 89 Query: 438 ERDETLPEYDK 470 E + + +K Sbjct: 90 EYNSNISPEEK 100
>NOP14_SCHPO (O43051) Probable nucleolar complex protein 14| Length = 827 Score = 42.4 bits (98), Expect = 7e-04 Identities = 24/71 (33%), Positives = 37/71 (52%) Frame = +3 Query: 258 NPFEAIWSRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRIG 437 N F+ +++RKFDV G++ KG E + SR R T+ E ++ +S DRR G Sbjct: 52 NLFDRQFTKRKFDVGGRRVKGTEGKPGVSRGVGEELRRRTIGAELKKRNRSGAIIDRRFG 111 Query: 438 ERDETLPEYDK 470 E + L +K Sbjct: 112 ENNPHLSVEEK 122
>NOP14_YARLI (Q6C2F4) Probable nucleolar complex protein 14| Length = 832 Score = 35.4 bits (80), Expect = 0.080 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 3/123 (2%) Frame = +3 Query: 111 MAKTKPMAAGAASADK--ITNKKKGKGTMEGRN-GPXXXXXXXXXXXXXERSNPFEAIWS 281 MAKT + + K +T + KG + N G ++ NPF+ + Sbjct: 1 MAKTSQLKRLKETLKKNDLTGQTNVKGNKKKMNSGKNRQDRDKVLSDIRQQFNPFDVKVA 60 Query: 282 RRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRIGERDETLPE 461 R+K D+ G+ +G R S+ R E + + DRR GE D + Sbjct: 61 RKKHDIGGRTVRGSVGRPGLSKLSGEEARMEARKLELQNKGRVGGVFDRRFGEGDSNMNP 120 Query: 462 YDK 470 +K Sbjct: 121 EEK 123
>Y1R1_DROME (P16424) Hypothetical 50 kDa protein in type I retrotransposable| element R1DM (ORF 1) Length = 471 Score = 32.0 bits (71), Expect = 0.88 Identities = 16/58 (27%), Positives = 27/58 (46%) Frame = -2 Query: 468 CRTRAESRPSRRCAGHGRRTTWRSARTP*AGCSPSCGQRRSGSGRCASPRPCASCRAR 295 CR++ + RC G + + R + C CGQ+ + +C +P C +CR R Sbjct: 390 CRSQVRTYACHRCVGFDHKVS--ECRQKESVCR-QCGQQGHTAAKCQNPVDCRNCRHR 444
>MLH_TETTH (P40631) Micronuclear linker histone polyprotein (MIC LH)| [Contains: Micronuclear linker histone-alpha; Micronuclear linker histone-beta; Micronuclear linker histone-delta; Micronuclear linker histone-gamma] Length = 633 Score = 31.2 bits (69), Expect = 1.5 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 24/152 (15%) Frame = +3 Query: 93 SRSVSAMAKTKPMAAGAASADKITNKKKGKGTMEGRNGPXXXXXXXXXXXXXERSNPFEA 272 ++ + + +K +G+ S K +K KGK + +G+N +N + Sbjct: 401 TKKANNKSASKASKSGSKSKGKSASKSKGKSSSKGKNSKSRSASKPKSNAAQNSNNTHQT 460 Query: 273 IWS----------------RRKFDVLGKK------RKGEERRTSRSRSDAVHKRENTLLK 386 S R + D++ +K KG++ S +RS + K + K Sbjct: 461 ADSSENASSTTQTRTRGRQREQKDMVNEKSNSKSSSKGKKNSKSNTRSKSKSKSASKSRK 520 Query: 387 EFEQSAKSSVFHDR--RIGERDETLPEYDKPS 476 +S K + H R R R E+ + + P+ Sbjct: 521 NASKSKKDTTNHGRQTRSKSRSESKSKSEAPN 552
>FILA_MOUSE (P11088) Filaggrin (Fragment)| Length = 336 Score = 30.8 bits (68), Expect = 2.0 Identities = 21/60 (35%), Positives = 27/60 (45%) Frame = +2 Query: 287 QVRRARQEAQGRGEAHLPLPLRRCPQEGEHPAQGVRAERQVVRLP*PAHRREGRDSARVR 466 Q + Q Q RG H + E E P G R ++ R AH+ +GRDSAR R Sbjct: 165 QHQHGHQHEQQRGHQHQ----HQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARPR 220
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 30.4 bits (67), Expect = 2.6 Identities = 24/95 (25%), Positives = 34/95 (35%) Frame = +2 Query: 116 EDEADGSWRGLGGQDNEQEERQXXXXXXXXXXXXXXXXXXXXXXXXXQPLRGHLVAPQVR 295 EDE +G R L +D E+E+R+ PLR H + Sbjct: 685 EDEEEGHGRSLSQEDQEEEDRRGESAKVQA------------------PLRHHREEEEEE 726 Query: 296 RARQEAQGRGEAHLPLPLRRCPQEGEHPAQGVRAE 400 +E +GR LP + P G A G +E Sbjct: 727 EEEEEEEGR----LPFTIIPNPLSGREAAGGASSE 757
>KRA42_HUMAN (Q9BYR5) Keratin-associated protein 4-2 (Keratin-associated protein| 4.2) (Ultrahigh sulfur keratin-associated protein 4.2) Length = 136 Score = 30.0 bits (66), Expect = 3.3 Identities = 21/63 (33%), Positives = 24/63 (38%) Frame = -2 Query: 468 CRTRAESRPSRRCAGHGRRTTWRSARTP*AGCSPSCGQRRSGSGRCASPRPCASCRARRT 289 CRT RPS + R +S C PSCGQ C P C S R T Sbjct: 71 CRTTC-CRPSCCVSSCFRPQCCQSVCCQPTCCRPSCGQTTCCRTTCYRPSCCVSTCCRPT 129 Query: 288 CGA 280 C + Sbjct: 130 CSS 132
>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7| Length = 1303 Score = 29.3 bits (64), Expect = 5.7 Identities = 19/65 (29%), Positives = 28/65 (43%) Frame = +3 Query: 279 SRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRIGERDETLP 458 S R+ KK + +E+R S+ R + HKR + +F + S F G R Sbjct: 99 SHRRLKRKRKKEREKEKRRSKKRRKSKHKRHASSSDDFSDFSDDSDFSPSEKGHR--KYR 156 Query: 459 EYDKP 473 EY P Sbjct: 157 EYSPP 161
>NOP14_CANGA (Q6FNV1) Probable nucleolar complex protein 14| Length = 799 Score = 29.3 bits (64), Expect = 5.7 Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 13/116 (11%) Frame = +3 Query: 162 TNKKKGKGTMEGRNGPXXXXXXXXXXXXXERSNPFEAIWSRRKFDVLGKKRKGEERRTSR 341 TN KK K +R NPFE ++ K RKG + Sbjct: 22 TNVKKSKKGKREAKKYDHEEKARTIAKIRDRFNPFEVKTTKNK-------RKGGD--PGL 72 Query: 342 SRSDAVHKRENTLLKEFEQSAKSSVFH-------------DRRIGERDETLPEYDK 470 SD V + + K+ + A+ F D+R GERD+TL E +K Sbjct: 73 LNSDRVAVGKPGISKQIGEEARRRAFEAKKLMKKRKGGVIDKRFGERDKTLTEEEK 128
>B4GT4_MOUSE (Q9JJ04) Beta-1,4-galactosyltransferase 4 (EC 2.4.1.-)| (Beta-1,4-GalTase 4) (Beta4Gal-T4) (b4Gal-T4) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 4) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 4) [Includes: N Length = 344 Score = 29.3 bits (64), Expect = 5.7 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -1 Query: 457 GRVSSLSPMRRSWKTDDLALCSNSLSRV 374 GR+ L M R WKTD L+ CS L V Sbjct: 300 GRMKLLQQMSRVWKTDGLSSCSYRLLSV 327
>MS87F_DROME (P08175) Male-specific sperm protein Mst87F| Length = 56 Score = 28.9 bits (63), Expect = 7.5 Identities = 12/31 (38%), Positives = 12/31 (38%) Frame = -2 Query: 375 CSPSCGQRRSGSGRCASPRPCASCRARRTCG 283 C CG G G C P C C A CG Sbjct: 17 CCGPCGPCGGGCGPCYGPNVCGPCYACGPCG 47
>OAT_BORPE (Q7VSA0) Ornithine aminotransferase (EC 2.6.1.13)| (Ornithine--oxo-acid aminotransferase) Length = 413 Score = 28.9 bits (63), Expect = 7.5 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = -1 Query: 208 GPFLPSIVPLPFFLFVILSAEAAPAAIGFVFAMAETERDVV 86 GPF P +PF F L A P + F+ + E V+ Sbjct: 166 GPFAPGFTVVPFGDFAALQAAVTPRTVAFLVEPIQGEAGVI 206
>OAT_BORPA (Q7W1E4) Ornithine aminotransferase (EC 2.6.1.13)| (Ornithine--oxo-acid aminotransferase) Length = 413 Score = 28.9 bits (63), Expect = 7.5 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = -1 Query: 208 GPFLPSIVPLPFFLFVILSAEAAPAAIGFVFAMAETERDVV 86 GPF P +PF F L A P + F+ + E V+ Sbjct: 166 GPFAPGFTVVPFGDFAALQAAVTPRTVAFLVEPIQGEAGVI 206
>OAT_BORBR (Q7WP51) Ornithine aminotransferase (EC 2.6.1.13)| (Ornithine--oxo-acid aminotransferase) Length = 413 Score = 28.9 bits (63), Expect = 7.5 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = -1 Query: 208 GPFLPSIVPLPFFLFVILSAEAAPAAIGFVFAMAETERDVV 86 GPF P +PF F L A P + F+ + E V+ Sbjct: 166 GPFAPGFTVVPFGDFAALQAAVTPRTVAFLVEPIQGEAGVI 206
>IER5_MOUSE (O89113) Immediate early response gene 5 protein| Length = 308 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = -2 Query: 402 RSARTP*AGCSPSCGQRRSGSGRCASPRPCASCRARRTCGATR 274 R+ R P GC P+ +R S G A P PC R G R Sbjct: 168 RAVRRP-CGCPPAVEERSSEDGSPAPPAPCPRKRGAAGVGGGR 209
>APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipophorin-2| (Apolipophorin II) (apoLp-2); Apolipophorin-1 (Apolipophorin I) (apoLp-1)] Length = 3305 Score = 28.9 bits (63), Expect = 7.5 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = -2 Query: 375 CSPSCGQRRSGSGRCASPR-PCASCRARRTCGATRW 271 C + G RRS S C PR P +C AR G W Sbjct: 2962 CDLARGYRRSRSRGCCPPRCPTPACAARTATGPGSW 2997
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -2 Query: 429 AGHGRRTTWRSARTP*AGCSPSCGQRRSGSGRCASPRPCASCRARRTC 286 A RR R A C P C QR + A+ CA C++ TC Sbjct: 469 AACSRRGRGRGALKSPEECPPLCSQRLTCEDCLANSSQCAWCQSTHTC 516
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 28.9 bits (63), Expect = 7.5 Identities = 27/115 (23%), Positives = 42/115 (36%) Frame = +3 Query: 87 TTSRSVSAMAKTKPMAAGAASADKITNKKKGKGTMEGRNGPXXXXXXXXXXXXXERSNPF 266 ++SRS S + + S K ++ K +G P R Sbjct: 210 SSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSRSRSNKSR---- 265 Query: 267 EAIWSRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRR 431 + S+ K + R + R SRSRS +V KRE+ +S S+ D R Sbjct: 266 DVSKSKSKSHSRTRSRSPKRERDSRSRSRSVSKRESR-----SRSRSKSIHRDSR 315
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 25.0 bits (53), Expect(2) = 9.0 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 426 GHGRRTTWRSARTP*AGCSPSCGQRRSGSGR 334 G GRR +WR R G + + G R G GR Sbjct: 564 GRGRRGSWRGGRR--GGGAGASGGGRGGRGR 592 Score = 21.9 bits (45), Expect(2) = 9.0 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 5/28 (17%) Frame = -3 Query: 281 RPDGLEGV-----APLRRRGPARLHGHG 213 R GL G +P RRG R GHG Sbjct: 598 RGSGLSGTREDAGSPSARRGEQRRRGHG 625
>CH10_BRUSU (P0A343) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 98 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +2 Query: 257 QPLRGHLVAPQVRRARQEAQGRGEAHLPLPLRRCPQEGEHPAQGVRAERQVVRL 418 +PL +V VRR EA+ G +P + PQEGE A G A + +L Sbjct: 7 RPLHDRVV---VRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKL 57
>CH10_BRUME (P0A342) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 98 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +2 Query: 257 QPLRGHLVAPQVRRARQEAQGRGEAHLPLPLRRCPQEGEHPAQGVRAERQVVRL 418 +PL +V VRR EA+ G +P + PQEGE A G A + +L Sbjct: 7 RPLHDRVV---VRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKL 57
>CH10_BRUAB (P0A344) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 98 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +2 Query: 257 QPLRGHLVAPQVRRARQEAQGRGEAHLPLPLRRCPQEGEHPAQGVRAERQVVRL 418 +PL +V VRR EA+ G +P + PQEGE A G A + +L Sbjct: 7 RPLHDRVV---VRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKL 57
>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2330 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -2 Query: 429 AGHGRRTTWRSARTP*AGCSPSCGQRRSGSGRCASPRPCASCRARRTC 286 A RR R A C P C QR + A+ CA C++ TC Sbjct: 469 AACSRRGRGRGALKNPEECPPLCSQRLTCEDCLANSSQCAWCQSTHTC 516 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,658,652 Number of Sequences: 219361 Number of extensions: 744785 Number of successful extensions: 3710 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3443 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3691 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
