ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30b09 |
|---|---|
| Clone Library Name | barley_pub |
>TF3C4_MOUSE (Q8BMQ2) General transcription factor 3C polypeptide 4 (EC| 2.3.1.48) (Transcription factor IIIC-delta subunit) (TF3C-delta) (TFIIIC 90 kDa subunit) (TFIIIC 90) Length = 817 Score = 31.2 bits (69), Expect = 1.4 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 27/126 (21%) Frame = +1 Query: 169 DAITWSSDNLVAVASGHIVTILNPAA-LDGP-RGLVVLRPRDPFPIG-----------VV 309 + ++WS D+ V+V++ V +L + P + LV+ R P P+ V Sbjct: 64 EPLSWSEDHRVSVSTARSVAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVA 123 Query: 310 NREDLFEPSLVPT-----SLARDTEPCARSV---------SWSQQGFAPNSGCLLAVCTV 447 ++ F S PT L R P +++ SWS G N CLLA T+ Sbjct: 124 ECKEKFASSKDPTISQTFMLDRMFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTM 183 Query: 448 DGHVNL 465 D + + Sbjct: 184 DNRLTV 189
>TF3C4_HUMAN (Q9UKN8) General transcription factor 3C polypeptide 4 (EC| 2.3.1.48) (Transcription factor IIIC-delta subunit) (TF3C-delta) (TFIIIC 90 kDa subunit) (TFIIIC 90) Length = 822 Score = 30.8 bits (68), Expect = 1.9 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 27/126 (21%) Frame = +1 Query: 169 DAITWSSDNLVAVASGHIVTILNPAA-LDGP-RGLVVLRPRDPFPIG-----------VV 309 + + WS D+ V+V++ + +L + P + LV+ R P P+ V Sbjct: 68 EPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVA 127 Query: 310 NREDLFEPSLVPT-----SLARDTEPCARSV---------SWSQQGFAPNSGCLLAVCTV 447 ++ F S PT L R P +++ SWS G N CLLA T+ Sbjct: 128 ECKEKFAASKDPTVSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTM 187 Query: 448 DGHVNL 465 D + + Sbjct: 188 DNRLTI 193
>TTC16_MOUSE (Q8C1F5) Tetratricopeptide repeat protein 16 (TPR repeat protein| 16) Length = 767 Score = 30.8 bits (68), Expect = 1.9 Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 3/98 (3%) Frame = -3 Query: 452 PSTVQTANKQPEFGANPCWDHETDRAHGSVSRAKDV---GTKLGSKRSSLLTTPMGKGSL 282 PS + + PE G P T + RAK V G KL ++RSS T SL Sbjct: 640 PSQSTSTTEAPE-GPRPSKSRSTLSVKERIRRAKAVRAQGWKLKAQRSSQKVTKTP--SL 696 Query: 281 GRSTTSPRGPSSAAGFRIVTMWPEATATKLSLDQVMAS 168 STT SA T WP A LS ++ ++ Sbjct: 697 THSTTHSDIGESANDTPGQTPWPSKAADSLSFSEISST 734
>CSPG2_HUMAN (P13611) Versican core protein precursor (Large fibroblast| proteoglycan) (Chondroitin sulfate proteoglycan core protein 2) (PG-M) (Glial hyaluronate-binding protein) (GHAP) Length = 3396 Score = 30.4 bits (67), Expect = 2.4 Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 17/99 (17%) Frame = +1 Query: 124 PHYQAATLIAS---------PSYPDAITWSSDNLVAVASGHIVTILNPAALDG-PRGLVV 273 P+Y TL S PS P I S+ ASGH I P+AL G G V Sbjct: 2805 PYYTDTTLAVSTFAKLSSQTPSSPLTIYSGSE-----ASGH-TEIPQPSALPGIDVGSSV 2858 Query: 274 LRPRDPFPIGVVNREDLFEPS-------LVPTSLARDTE 369 + P+D F VN E F+PS P SL+ DT+ Sbjct: 2859 MSPQDSFKEIHVNIEATFKPSSEEYLHITEPPSLSPDTK 2897
>DNBI_HCMVA (P17147) Major DNA-binding protein (MDBP)| Length = 1235 Score = 29.6 bits (65), Expect = 4.1 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = -2 Query: 210 GNGHQVVA*PSDGVWIGRGGNQGGGL-VMRSHGQRNLRASNPKARR 76 G G V PSDG+ GRGG GG M G R L AS + R Sbjct: 554 GGGRDVSGGPSDGLGGGRGGGGGGDSGGMMGRGGRMLGASVDRTYR 599
>DHE3_BACTN (P94598) Glutamate dehydrogenase (EC 1.4.1.3) (GDH)| (NAD(P)H-utilizing glutamate dehydrogenase) Length = 444 Score = 29.3 bits (64), Expect = 5.4 Identities = 17/33 (51%), Positives = 20/33 (60%) Frame = -3 Query: 323 RSSLLTTPMGKGSLGRSTTSPRGPSSAAGFRIV 225 ++SL T PMG G G S SPRG S+A R V Sbjct: 112 KNSLTTLPMGGGK-GGSDFSPRGKSNAEVMRFV 143
>Y150_MYCPN (P75036) Very hypothetical mgpC-like protein MPN150 (E07_orf224)| Length = 224 Score = 29.3 bits (64), Expect = 5.4 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +1 Query: 115 AMAPHYQAATLIASPSYPDAITWSSDNLVAVASGHIVTILNPAALDGP-RGLVVL 276 A A Y T + +Y A+TWS+ + A G+ + N A L+GP GL L Sbjct: 88 AGAVGYDMTTDTNASTYNQALTWSTTAGLDSAGGYKALVENTAGLNGPINGLFTL 142
>PDE4C_DROME (Q9W4S9) cAMP-specific 3',5'-cyclic phosphodiesterase, isoforms N/G| (EC 3.1.4.17) (Learning/memory process protein) (Protein dunce) Length = 983 Score = 28.9 bits (63), Expect = 7.1 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 8/78 (10%) Frame = -3 Query: 446 TVQTANKQPEFGANPC--------WDHETDRAHGSVSRAKDVGTKLGSKRSSLLTTPMGK 291 T+ T + EF +P +D ET+ + ++ A G+ SKRSSL + + Sbjct: 169 TMATEAEGEEFDVDPMDEDDEDQTYDRETEEFYSNIQDAAGTGSSSRSKRSSLFS----R 224 Query: 290 GSLGRSTTSPRGPSSAAG 237 +TTS G + G Sbjct: 225 SDSSATTTSSSGGGTFTG 242
>SYQ_DROME (Q9Y105) Probable glutaminyl-tRNA synthetase (EC 6.1.1.18)| (Glutamine--tRNA ligase) (GlnRS) Length = 778 Score = 28.9 bits (63), Expect = 7.1 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +2 Query: 269 LCFALGILFPLEWSTGKISLN 331 LC ALGI P++W G++++N Sbjct: 473 LCNALGIYCPVQWEYGRLNMN 493
>DCD_COREF (Q8FM44) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP| deaminase) Length = 193 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 320 SSLLTTPMGKGSLGRSTTSPRGPSSAAGF 234 SS TP G GSLG RGP+ + G+ Sbjct: 155 SSPAETPYGSGSLGSKYQGQRGPTPSKGY 183 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,765,779 Number of Sequences: 219361 Number of extensions: 1462870 Number of successful extensions: 4490 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4303 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4487 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
