ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl30b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLMU_BACSK (Q5WAD9) Bifunctional protein glmU [Includes: UDP-N-a... 30 3.0
2UL17_EHV1B (P28950) Gene 45 protein 30 3.9
3Y255_MYCGE (P47497) Hypothetical protein MG255 29 6.7
4Y969_VIBPA (Q87R29) UPF0227 protein VP0969 28 8.7
5Y358_MYCPN (P75422) Hypothetical protein MG255 homolog (H91_orf534) 28 8.7

>GLMU_BACSK (Q5WAD9) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 454

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 TTWRSTGSTVGMPVVLVLVSQLGGPRSHKKAPAYISS*CAVKEGVHVMSLNSGSGPH 404
           TT+ S  +++G   VL        P +  K P+ I   C ++ G  + S   G G H
Sbjct: 260 TTYISADASIGQDTVLY-------PNTSIKGPSVIGEDCVIESGTEIASATLGRGVH 309



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>UL17_EHV1B (P28950) Gene 45 protein|
          Length = 706

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -1

Query: 456 NLSPHNFTRILAGQLVVDEARFLNLGS*RGRPPLQHISSRYKQVPSCENEDLLTETPK 283
           N S H+ T +L G    D  RF+N G  R  PP    S   +   S   +D+L  TP+
Sbjct: 304 NSSIHDATALLLGLEPPDSGRFVNSGPQRHLPPQGPRSPASRDCQSGMLDDVLLLTPE 361



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>Y255_MYCGE (P47497) Hypothetical protein MG255|
          Length = 365

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 201 LAFQKLAWCSITTWRSTGSTVGMPVVLVLVSQLGGPRSHKKAPAYI 338
           L+F K  W  +TT  + G+T+G PV  + ++Q  G + +     +I
Sbjct: 142 LSFIKQQWPILTTLVTVGTTLGTPVFSLTIAQQDGIKQNAGNDVFI 187



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>Y969_VIBPA (Q87R29) UPF0227 protein VP0969|
          Length = 179

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 459 NNLSPHNFTRILAGQLVVDEARFLNLGS*RGRPPLQHISSRYKQV 325
           ++ SP N  ++L  Q + D+ RF+N  +   +  +QH+     +V
Sbjct: 9   DSTSPGNHEKVLQLQFIDDDVRFINYSTLHPKHDMQHLLKEVSKV 53



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>Y358_MYCPN (P75422) Hypothetical protein MG255 homolog (H91_orf534)|
          Length = 534

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 201 LAFQKLAWCSITTWRSTGSTVGMPVVLVLVSQ 296
           L+F K  W  +TT  + G+T+G P+  + +SQ
Sbjct: 140 LSFIKEQWPILTTLVTVGTTLGTPIFSITISQ 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,250,847
Number of Sequences: 219361
Number of extensions: 1082604
Number of successful extensions: 2327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2327
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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