ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30b06 |
|---|---|
| Clone Library Name | barley_pub |
>VPS35_MOUSE (Q9EQH3) Vacuolar protein sorting 35 (Vesicle protein sorting 35)| (Maternal-embryonic 3) Length = 796 Score = 112 bits (279), Expect = 7e-25 Identities = 57/106 (53%), Positives = 74/106 (69%) Frame = +3 Query: 171 DDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKYYELYMR 350 D++E+ L E I V+ +F M R LD N L DALK+++ ML ELRTS LSP YYELYM Sbjct: 10 DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69 Query: 351 AFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGHVLPRLYLLCTV 488 DE+ LE++ +E +G V DLYELVQ+AG+++PRLYLL TV Sbjct: 70 ISDELHYLEVYLTDEFAKGR-KVADLYELVQYAGNIIPRLYLLITV 114
>VPS35_HUMAN (Q96QK1) Vacuolar protein sorting 35 (Vesicle protein sorting 35)| (hVPS35) (Maternal-embryonic 3) Length = 796 Score = 112 bits (279), Expect = 7e-25 Identities = 57/106 (53%), Positives = 74/106 (69%) Frame = +3 Query: 171 DDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKYYELYMR 350 D++E+ L E I V+ +F M R LD N L DALK+++ ML ELRTS LSP YYELYM Sbjct: 10 DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69 Query: 351 AFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGHVLPRLYLLCTV 488 DE+ LE++ +E +G V DLYELVQ+AG+++PRLYLL TV Sbjct: 70 ISDELHYLEVYLTDEFAKGR-KVADLYELVQYAGNIIPRLYLLITV 114
>VPS35_YEAST (P34110) Vacuolar protein sorting-associated protein VPS35| Length = 944 Score = 81.3 bits (199), Expect = 1e-15 Identities = 42/96 (43%), Positives = 62/96 (64%) Frame = +3 Query: 201 IAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKYYELYMRAFDEMRKLEM 380 IA ++Q M+R L + L ++L++++ ML+ELR LSP KYYELY+ FD + L Sbjct: 11 IAVIKQRTALMNRCLSQHKLMESLQHTSIMLTELRNPNLSPKKYYELYVIIFDSLTNLST 70 Query: 381 FFREETRRGSCSVVDLYELVQHAGHVLPRLYLLCTV 488 + E + + DLYELVQ+ G+V+PRLYL+ TV Sbjct: 71 YLIENHPQNH-HLADLYELVQYTGNVVPRLYLMITV 105
>VPS35_SCHPO (O74552) Vacuolar protein sorting-associated protein vps35| Length = 785 Score = 61.6 bits (148), Expect = 1e-09 Identities = 30/63 (47%), Positives = 43/63 (68%) Frame = +3 Query: 300 LRTSRLSPHKYYELYMRAFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGHVLPRLYLL 479 +R S L+P +YYELYM + +R L E G+ +++DLYELVQ+AG ++PRLYL+ Sbjct: 1 MRNSALTPKQYYELYMFNMESLRLLGGTLLETHLNGTHNLMDLYELVQYAGSIVPRLYLM 60 Query: 480 CTV 488 TV Sbjct: 61 ITV 63
>LAP2_HUMAN (Q96RT1) LAP2 protein (Erbb2-interacting protein) (Erbin)| (Densin-180-like protein) Length = 1412 Score = 32.7 bits (73), Expect = 0.53 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = -1 Query: 424 STTEQLPRRVSSLKNISSFRISSNALMY 341 ++ +QLP + SLKNI++ +I N LMY Sbjct: 263 NSLQQLPETIGSLKNITTLKIDENQLMY 290
>CUT7_SCHPO (P24339) Kinesin-like protein cut7 (Cell untimely torn protein 7)| Length = 1085 Score = 32.3 bits (72), Expect = 0.70 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Frame = +3 Query: 162 GGGDDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKYYEL 341 G D + L+EG + + + + +LD++N + A+K S YYEL Sbjct: 171 GDLSDSDGILSEGAGLIPRALYQLFSSLDNSNQEYAVKCS----------------YYEL 214 Query: 342 Y------MRAFDEMRKLEMFFREETRRGSCSVVDLYE-LVQHAG 452 Y + +E+RK F + +RRG+ + + E +++AG Sbjct: 215 YNEEIRDLLVSEELRKPARVFEDTSRRGNVVITGIEESYIKNAG 258
>LAP2_MOUSE (Q80TH2) LAP2 protein (Erbb2-interacting protein) (Erbin)| (Densin-180-like protein) Length = 1402 Score = 32.3 bits (72), Expect = 0.70 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -1 Query: 424 STTEQLPRRVSSLKNISSFRISSNALMY 341 ++ +QLP + SLKN+++ +I N LMY Sbjct: 263 NSLQQLPETIGSLKNVTTLKIDENQLMY 290
>SEC71_SCHPO (Q9UT02) Protein transport protein sec71| Length = 1811 Score = 29.6 bits (65), Expect = 4.5 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 11/113 (9%) Frame = +3 Query: 159 DGGGDDEERWLAEGIAGVQQNAFYMHRALD-SNNLKDA-----LKYSAQMLSELRTSRLS 320 D G + + +L E +Q+N + D ++N + L ++A + + L T Sbjct: 860 DDGANLSDSFLTEVYEEIQKNEIVLKDEQDPTSNFPEIPGTSNLSFAANISNALATVGRD 919 Query: 321 PHKYYELYMRAFDEM-RKLEMFF----REETRRGSCSVVDLYELVQHAGHVLP 464 + E Y A ++M K E F RE+ RG S D+Y +H HV P Sbjct: 920 LQR--EAYYMASNKMANKTEALFKDLIREQRERGKLSGNDIYYTARHFEHVCP 970
>NEMO_MOUSE (O88522) NF-kappa-B essential modulator (NEMO) (NF-kappa-B| essential modifier) (Inhibitor of nuclear factor kappa-B kinase gamma subunit) (IkB kinase gamma subunit) (I-kappa-B kinase gamma) (IKK-gamma) (IKKG) (IkB kinase-associated protein 1) Length = 412 Score = 28.9 bits (63), Expect = 7.7 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 15/96 (15%) Frame = +3 Query: 132 NTAAARMLPDGGGDDEERWLAEG----------IAGVQQNAFYMHRALDSNN-LKDALKY 278 N + + P GG +++ L E + Q + R L+ N L+DA++ Sbjct: 8 NQLSETVQPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTPETLQRCLEENQELRDAIRQ 67 Query: 279 SAQML----SELRTSRLSPHKYYELYMRAFDEMRKL 374 S QML EL ++S + E M F E RKL Sbjct: 68 SNQMLRERCEELLHFQVSQREEKEFLMCKFQEARKL 103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,068,253 Number of Sequences: 219361 Number of extensions: 648704 Number of successful extensions: 2418 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 2355 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2415 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
