ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30a12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 48.1 bits (24), Expect = 0.018 Identities = 33/36 (91%) Strand = Plus / Plus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 |||||| |||||||| ||||||||||||| |||||| Sbjct: 1484469 cagcaccagcaccagcgccagcgccagcaccagcac 1484504 Score = 44.1 bits (22), Expect = 0.28 Identities = 31/34 (91%) Strand = Plus / Plus Query: 3 cagcactagcaccagagccagcgccagcaacagc 36 |||||| |||||||| ||||||||||||| |||| Sbjct: 1484289 cagcaccagcaccagcgccagcgccagcaccagc 1484322 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 |||||| |||||||| |||||||||||| |||||| Sbjct: 1484493 cagcaccagcaccagcaccagcgccagcaccagcac 1484528
>gb|AC108872.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0079P23, complete sequence Length = 125090 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 cccctcgccatcgccgtcgcc 91 ||||||||||||||||||||| Sbjct: 121197 cccctcgccatcgccgtcgcc 121217
>ref|XM_587977.2| PREDICTED: Bos taurus similar to hematopoietically expressed homeobox (LOC539542), mRNA Length = 1727 Score = 42.1 bits (21), Expect = 1.1 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 124 cccaccccc-cgcccacgctgccgtcccc 151 ||||||||| ||||||||||||||||||| Sbjct: 177 cccacccccacgcccacgctgccgtcccc 205
>gb|AY657627.1| Synthetic construct Peudomonas aeruginosa clone FLH041251.01F PA1724 gene, partial cds Length = 627 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 cgcggcgcctgcgcctgcgcc 72 ||||||||||||||||||||| Sbjct: 479 cgcggcgcctgcgcctgcgcc 499
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 cagcgccagcaacagcacgcg 41 ||||||||||||||||||||| Sbjct: 1935571 cagcgccagcaacagcacgcg 1935551
>gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0313E01, complete sequence Length = 149215 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 cccctcgccatcgccgtcgcc 91 ||||||||||||||||||||| Sbjct: 50364 cccctcgccatcgccgtcgcc 50384
>ref|XM_389134.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG08958.1) partial mRNA Length = 1047 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 174 ccgccgctactgccgcccctgtggc 198 ||||||||||||||||| ||||||| Sbjct: 980 ccgccgctactgccgccgctgtggc 1004
>emb|AJ630362.1| Canis familiaris MHC class II region on chromosome CFA12, partial sequence, BAC clone 236k8, gene for protein similar to butyrophilin subfamily 1 member A1 (BTN1A1), FK506-binding protein 1A pseudogene, BTNL2 gene, ATP5L pseudogene, DLA-DRA1 gene, RPL7A pseudogene and DLA-DRB1 gene Length = 135953 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 69 cgcccctcgccatcgccgtcgcccctcgc 97 ||||||||||| ||||| ||||||||||| Sbjct: 97484 cgcccctcgccctcgccctcgcccctcgc 97512
>emb|AL110117.3|HSJ474M20 Human DNA sequence from clone RP3-474M20 on chromosome 4, complete sequence Length = 129323 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cctgccactggccccaccccc 132 ||||||||||||||||||||| Sbjct: 2658 cctgccactggccccaccccc 2638
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 cctgcgcctgcgcccctcgcc 79 ||||||||||||||||||||| Sbjct: 3346687 cctgcgcctgcgcccctcgcc 3346707
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 cccctcgccatcgccgtcgcc 91 ||||||||||||||||||||| Sbjct: 25175094 cccctcgccatcgccgtcgcc 25175114
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 306 ctcgctgcgttcgtggcggttggcg 330 ||||| ||||||||||||||||||| Sbjct: 28112294 ctcgcggcgttcgtggcggttggcg 28112270 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cggcgcctgcgcctgcgccc 73 |||||||||||||||||||| Sbjct: 13144114 cggcgcctgcgcctgcgccc 13144095
>gb|AE004598.1| Pseudomonas aeruginosa PAO1, section 159 of 529 of the complete genome Length = 11557 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 cgcggcgcctgcgcctgcgcc 72 ||||||||||||||||||||| Sbjct: 8274 cgcggcgcctgcgcctgcgcc 8294
>gb|AF226688.1|AF226688 Bombyx mori fibroin heavy chain Fib-H (fib-H) gene, complete cds Length = 80009 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagca 31 |||||| |||||| ||||||||||||||| Sbjct: 65590 cagcaccagcacctgagccagcgccagca 65562
>dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1717_A09 Length = 203132 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 306 ctcgctgcgttcgtggcggttggcg 330 ||||| ||||||||||||||||||| Sbjct: 101941 ctcgcggcgttcgtggcggttggcg 101917
>gb|U91663.1|U91663 Plasmodium falciparum isolate V435, merozoite surface antigen 2 (MSP-2) gene, partial cds Length = 659 Score = 42.1 bits (21), Expect = 1.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 6 cactagcaccagagccagcgccagcaacagcac 38 |||||||||||| |||||| |||||| |||||| Sbjct: 211 cactagcaccagcgccagcaccagcaccagcac 179
>gb|U56077.1|PAU56077 Pseudomonas aeruginosa exoenzyme S secretion (psc) locus, exsD, pscB, pscC, pscD, pscE, pscF, pscG, pscH, pscI, pscJ, pscK and pscL genes, complete cds Length = 8424 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 cgcggcgcctgcgcctgcgcc 72 ||||||||||||||||||||| Sbjct: 7331 cgcggcgcctgcgcctgcgcc 7351
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 cccctcgccatcgccgtcgcc 91 ||||||||||||||||||||| Sbjct: 25493752 cccctcgccatcgccgtcgcc 25493772
>emb|Z68757.1|HSL26E12B Human DNA sequence from clone LA04NC01-26E12 on chromosome 4, complete sequence Length = 6273 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cctgccactggccccaccccc 132 ||||||||||||||||||||| Sbjct: 2498 cctgccactggccccaccccc 2478
>ref|XM_465291.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4275 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cggcgcctgcgcctgcgccc 73 |||||||||||||||||||| Sbjct: 52 cggcgcctgcgcctgcgccc 33
>ref|XM_463617.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1128 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 11 gcaccagagccagcgccagcaacagcac 38 ||||||| ||||||||||||| |||||| Sbjct: 335 gcaccagcgccagcgccagcaccagcac 362
>ref|NM_186275.1| Oryza sativa (japonica cultivar-group), mRNA Length = 357 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 atcgccgtcgcccctcgctg 99 |||||||||||||||||||| Sbjct: 113 atcgccgtcgcccctcgctg 94
>gb|L19047.1| Plasmodium falciparum merozoite surface antigen 2 (MSA-2) gene, partial cds Length = 585 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 223 cagcactagcaccagcaccagaaccagcaacagcac 188
>gb|L19045.1|PFAMSA2L Plasmodium falciparum MSA-2 (MSA-2) gene, partial cds Length = 615 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 253 cagcactagcaccagcaccagaaccagcaacagcac 218
>gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's Hospital Oakland Research Institute) complete sequence Length = 227955 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 cccccgcccacgctgccgtcccca 152 ||||||||||||| |||||||||| Sbjct: 61530 cccccgcccacgccgccgtcccca 61553
>gb|AE009097.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 123 of 256 of the complete sequence Length = 10683 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gcggcgcctgcgcctgcgcc 72 |||||||||||||||||||| Sbjct: 828 gcggcgcctgcgcctgcgcc 847
>gb|AY587898.1| Plasmodium falciparum merozoite surface protein 2 (MSP2) gene, MSP2-32 allele, partial cds Length = 163 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| ||||| |||||| |||||| Sbjct: 94 cagcactagcaccagcaccagcaccagcaccagcac 59
>gb|DQ171733.1| Plasmodium falciparum isolate wos63 merozoite surface protein 2 (msp2) gene, partial cds Length = 573 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 226 cagcactagcaccagcaccagaaccagcaacagcac 191
>gb|DQ171731.1| Plasmodium falciparum isolate wos61 merozoite surface protein 2 (msp2) gene, partial cds Length = 573 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 226 cagcactagcaccagcaccagaaccagcaacagcac 191
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gcggcgcctgcgcctgcgcc 72 |||||||||||||||||||| Sbjct: 1197121 gcggcgcctgcgcctgcgcc 1197140
>gb|DQ185319.1| Plasmodium falciparum isolate wos40 merozoite surface protein 2 (msp2) gene, partial cds Length = 597 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 250 cagcactagcaccagcaccagaaccagcaacagcac 215
>gb|U16842.2|PFU16842 Plasmodium falciparum isolate WOS16 merozoite surface antigen 2 (MSA-2) gene, partial cds Length = 587 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 227 cagcactagcaccagcaccagaaccagcaacagcac 192
>emb|CR848763.6| Zebrafish DNA sequence from clone CH211-137J23 in linkage group 15, complete sequence Length = 160444 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 103 ccgccgcgtcctgccactggccccaccc 130 ||||||| ||||||||||| |||||||| Sbjct: 104409 ccgccgcctcctgccactgaccccaccc 104382
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gcggcgcctgcgcctgcgcc 72 |||||||||||||||||||| Sbjct: 1493919 gcggcgcctgcgcctgcgcc 1493938
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ccctcgccatcgccgtcgcc 91 |||||||||||||||||||| Sbjct: 1391129 ccctcgccatcgccgtcgcc 1391110
>gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0049K09, complete sequence Length = 154181 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ccctcgccatcgccgtcgcc 91 |||||||||||||||||||| Sbjct: 3883 ccctcgccatcgccgtcgcc 3864
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gcggcgcctgcgcctgcgcc 72 |||||||||||||||||||| Sbjct: 1589354 gcggcgcctgcgcctgcgcc 1589373
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agccagcgccagcaacagca 37 |||||||||||||||||||| Sbjct: 253198 agccagcgccagcaacagca 253179
>gb|AE011847.1| Xanthomonas axonopodis pv. citri str. 306, section 225 of 469 of the complete genome Length = 10398 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gcggcgcctgcgcctgcgcc 72 |||||||||||||||||||| Sbjct: 7023 gcggcgcctgcgcctgcgcc 7042
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 gcggcgcctgcgcctgcgcc 72 |||||||||||||||||||| Sbjct: 2438824 gcggcgcctgcgcctgcgcc 2438805
>gb|AC116662.1| Rattus norvegicus, clone RP31-256A2, complete sequence Length = 112570 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 cccccgcccacgctgccgtcccca 152 ||||||||||||| |||||||||| Sbjct: 53717 cccccgcccacgccgccgtcccca 53694
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gcggcgcctgcgcctgcgcc 72 |||||||||||||||||||| Sbjct: 1345225 gcggcgcctgcgcctgcgcc 1345244
>gb|AC074282.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0049K09, complete sequence Length = 146576 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ccctcgccatcgccgtcgcc 91 |||||||||||||||||||| Sbjct: 90459 ccctcgccatcgccgtcgcc 90440
>gb|AC090120.8| Oryza sativa chromosome 10 BAC OSJNBb0049A16 genomic sequence, complete sequence Length = 129585 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 ctgccgcccctgtggcgcgc 202 |||||||||||||||||||| Sbjct: 46903 ctgccgcccctgtggcgcgc 46884
>gb|AY026914.1| Pseudomonas putida strain P111 czrBA operon, partial sequence; ben operon and ant operon, complete sequence; and catRBCA operon, partial sequence; and unknown gene Length = 15769 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ccagagccagcgccagcaac 33 |||||||||||||||||||| Sbjct: 5825 ccagagccagcgccagcaac 5844
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ctgccgcccctgtggcgcgc 202 |||||||||||||||||||| Sbjct: 18014130 ctgccgcccctgtggcgcgc 18014149 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ccctcgccatcgccgtcgcc 91 |||||||||||||||||||| Sbjct: 1391129 ccctcgccatcgccgtcgcc 1391110
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ccctcgccatcgccgtcgcc 91 |||||||||||||||||||| Sbjct: 4045941 ccctcgccatcgccgtcgcc 4045922
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 atcgccgtcgcccctcgctg 99 |||||||||||||||||||| Sbjct: 2280898 atcgccgtcgcccctcgctg 2280879
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 cgccgctactgccgcccctg 194 |||||||||||||||||||| Sbjct: 12494848 cgccgctactgccgcccctg 12494829 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 gcggcgcctgcgcctgcgcc 72 |||||||||||||||||||| Sbjct: 5202156 gcggcgcctgcgcctgcgcc 5202137
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 11 gcaccagagccagcgccagcaacagcac 38 ||||||| ||||||||||||| |||||| Sbjct: 40091471 gcaccagcgccagcgccagcaccagcac 40091498
>gb|AF329569.1|AF329569 Plasmodium falciparum genotype 1 from Tanzania merozoite surface protein 2 gene, partial cds Length = 407 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 285 cagcactagcaccagcaccagaaccagcaacagcac 250
>gb|AF329560.1|AF329560 Plasmodium falciparum genotype 2 from Uganda merozoite surface protein 2 gene, partial cds Length = 460 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 280 cagcactagcaccagcaccagaaccagcaacagcac 245
>gb|AF329538.1|AF329538 Plasmodium falciparum genotype 1 from Papua New Guinea merozoite surface protein 2 gene, partial cds Length = 457 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 277 cagcactagcaccagcaccagaaccagcaacagcac 242 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 |||||| ||||||||| |||| ||||||||||||| Sbjct: 139 cagcaccagcaccagaaccagaaccagcaacagcac 104
>gb|AF104713.1|AF104713 Plasmodium falciparum isolate VN30 merozoite surface protein (MSP2) gene, partial cds Length = 527 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 315 cagcactagcaccagcaccagaaccagcaacagcac 280
>gb|AF104707.1|AF104707 Plasmodium falciparum isolate VN24 merozoite surface protein (MSP2) gene, partial cds Length = 503 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 315 cagcactagcaccagcaccagaaccagcaacagcac 280
>gb|L22687.1|PFAOMPB Plasmodium falciparum merozoite surface antigen 2 gene, partial cds Length = 671 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 298 cagcactagcaccagcaccagaaccagcaacagcac 263
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 11 gcaccagagccagcgccagcaacagcac 38 ||||||| ||||||||||||| |||||| Sbjct: 34555 gcaccagcgccagcgccagcaccagcac 34582
>dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0066C12 Length = 168874 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ccctcgccatcgccgtcgcc 91 |||||||||||||||||||| Sbjct: 29422 ccctcgccatcgccgtcgcc 29403
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 gcggcgcctgcgcctgcgcc 72 |||||||||||||||||||| Sbjct: 622629 gcggcgcctgcgcctgcgcc 622610
>dbj|AP004750.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0421H01 Length = 142638 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 cgccgctactgccgcccctg 194 |||||||||||||||||||| Sbjct: 68582 cgccgctactgccgcccctg 68563
>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016O19 Length = 169120 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 gcggcgcctgcgcctgcgcc 72 |||||||||||||||||||| Sbjct: 68878 gcggcgcctgcgcctgcgcc 68859
>dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0042G06 Length = 123571 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cggcgcctgcgcctgcgccc 73 |||||||||||||||||||| Sbjct: 14144 cggcgcctgcgcctgcgccc 14125
>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476C12 Length = 157570 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cggcgcctgcgcctgcgccc 73 |||||||||||||||||||| Sbjct: 120691 cggcgcctgcgcctgcgccc 120672
>dbj|AK109614.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-G10, full insert sequence Length = 1304 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cgccgctactgccgcccctg 194 |||||||||||||||||||| Sbjct: 586 cgccgctactgccgcccctg 605
>gb|U91677.1|U91677 Plasmodium falciparum isolate T9/101, merozoite surface antigen 2 (MSP-2) gene, partial cds Length = 647 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 268 cagcactagcaccagcaccagaaccagcaacagcac 233
>dbj|AK100437.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088P12, full insert sequence Length = 1375 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 11 gcaccagagccagcgccagcaacagcac 38 ||||||| ||||||||||||| |||||| Sbjct: 818 gcaccagcgccagcgccagcaccagcac 791
>dbj|AK071325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089P04, full insert sequence Length = 1376 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 11 gcaccagagccagcgccagcaacagcac 38 ||||||| ||||||||||||| |||||| Sbjct: 819 gcaccagcgccagcgccagcaccagcac 792
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 ccagcgccagcaacagcacg 39 |||||||||||||||||||| Sbjct: 1927386 ccagcgccagcaacagcacg 1927405
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds Length = 157237 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ggggggaccgggctgggccg 234 |||||||||||||||||||| Sbjct: 57633 ggggggaccgggctgggccg 57614
>dbj|AP003824.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_B12 Length = 121362 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 atcgccgtcgcccctcgctg 99 |||||||||||||||||||| Sbjct: 54597 atcgccgtcgcccctcgctg 54578
>gb|AY108149.1| Zea mays PCO142893 mRNA sequence Length = 663 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gcggcgcctgcgcctgcgcc 72 |||||||||||||||||||| Sbjct: 178 gcggcgcctgcgcctgcgcc 197
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gtctcctcggacgaggagcg 287 |||||||||||||||||||| Sbjct: 1212334 gtctcctcggacgaggagcg 1212315
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ctgccgcccctgtggcgcgc 202 |||||||||||||||||||| Sbjct: 18023383 ctgccgcccctgtggcgcgc 18023402 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ccctcgccatcgccgtcgcc 91 |||||||||||||||||||| Sbjct: 1391126 ccctcgccatcgccgtcgcc 1391107
>gb|U72954.1|PFU72954 Plasmodium falciparum merozoite surface protein 2 (MSP-2) gene, partial cds Length = 446 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 265 cagcactagcaccagcaccagaaccagcaacagcac 230 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 |||||| ||||||||| ||||| |||||||||||| Sbjct: 181 cagcaccagcaccagaaccagcaacagcaacagcac 146 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 |||||| ||||||||| |||| ||||||||||||| Sbjct: 127 cagcaccagcaccagaaccagaaccagcaacagcac 92
>gb|U72952.1|PFU72952 Plasmodium falciparum merozoite surface protein 2 (MSP-2) gene, partial cds Length = 474 Score = 40.1 bits (20), Expect = 4.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 3 cagcactagcaccagagccagcgccagcaacagcac 38 ||||||||||||||| |||| ||||||||||||| Sbjct: 286 cagcactagcaccagcaccagaaccagcaacagcac 251 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,900,903 Number of Sequences: 3902068 Number of extensions: 1900903 Number of successful extensions: 45177 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44013 Number of HSP's gapped (non-prelim): 1163 length of query: 331 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 309 effective length of database: 17,147,199,772 effective search space: 5298484729548 effective search space used: 5298484729548 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
