ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl30a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_467437.1| Oryza sativa (japonica cultivar-group), mRNA 84 2e-13
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 84 2e-13
3dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic D... 84 2e-13
4dbj|AK065045.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 2e-13
5ref|XM_743362.1| Aspergillus fumigatus Af293 hypothetical protei... 42 0.61
6gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete se... 40 2.4
7gb|AE004855.1| Pseudomonas aeruginosa PAO1, section 416 of 529 o... 40 2.4
8dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 40 2.4
9ref|NM_197390.1| Oryza sativa (japonica cultivar-group) hypothet... 38 9.6
10gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 38 9.6
11emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete ch... 38 9.6
12emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chr... 38 9.6
13emb|AL512330.13| Human DNA sequence from clone RP11-334N17 on ch... 38 9.6
14emb|AL353618.11| Human DNA sequence from clone RP11-550K21 on ch... 38 9.6
15gb|AY436326.1| Homo sapiens angiotensin I converting enzyme (pep... 38 9.6
16gb|AE005850.1| Caulobacter crescentus CB15 section 176 of 359 of... 38 9.6
17dbj|AB229438.1| Aspergillus oryzae cDNA, contig sequence: AoEST6318 38 9.6
18dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 38 9.6
19gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 geno... 38 9.6
20dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
21dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 9.6
22gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 38 9.6
23gb|AC151487.3| Aotus nancymaae clone CH258-321B24, complete sequ... 38 9.6
24gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 9.6

>ref|XM_467437.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3793

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                       
Query: 124 cgatggagagccccgtgaaggaggagatcggcggggagctggcgatggagatcgagtcga 183
           ||||||||||||||| ||||||||||   || |||||||||||||||||||||||||| |
Sbjct: 238 cgatggagagccccgcgaaggaggaggcgggaggggagctggcgatggagatcgagtcca 297

                     
Query: 184 gcgtcacggc 193
            |||||||||
Sbjct: 298 ccgtcacggc 307



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 124      cgatggagagccccgtgaaggaggagatcggcggggagctggcgatggagatcgagtcga 183
                ||||||||||||||| ||||||||||   || |||||||||||||||||||||||||| |
Sbjct: 29513959 cgatggagagccccgcgaaggaggaggcgggaggggagctggcgatggagatcgagtcca 29513900

                          
Query: 184      gcgtcacggc 193
                 |||||||||
Sbjct: 29513899 ccgtcacggc 29513890



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>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1038_A06
          Length = 147836

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                          
Query: 124    cgatggagagccccgtgaaggaggagatcggcggggagctggcgatggagatcgagtcga 183
              ||||||||||||||| ||||||||||   || |||||||||||||||||||||||||| |
Sbjct: 108989 cgatggagagccccgcgaaggaggaggcgggaggggagctggcgatggagatcgagtcca 108930

                        
Query: 184    gcgtcacggc 193
               |||||||||
Sbjct: 108929 ccgtcacggc 108920



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>dbj|AK065045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I02, full
           insert sequence
          Length = 3793

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                       
Query: 124 cgatggagagccccgtgaaggaggagatcggcggggagctggcgatggagatcgagtcga 183
           ||||||||||||||| ||||||||||   || |||||||||||||||||||||||||| |
Sbjct: 238 cgatggagagccccgcgaaggaggaggcgggaggggagctggcgatggagatcgagtcca 297

                     
Query: 184 gcgtcacggc 193
            |||||||||
Sbjct: 298 ccgtcacggc 307



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>ref|XM_743362.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g01340)
           partial mRNA
          Length = 441

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 156 ggggagctggcgatggagatc 176
           |||||||||||||||||||||
Sbjct: 343 ggggagctggcgatggagatc 363



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>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence
          Length = 107448

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 68   ctctaaaccctagcggcatc 87
            ||||||||||||||||||||
Sbjct: 6518 ctctaaaccctagcggcatc 6537



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>gb|AE004855.1| Pseudomonas aeruginosa PAO1, section 416 of 529 of the complete
            genome
          Length = 11578

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  tcggcggggagctggcgatg 170
            ||||||||||||||||||||
Sbjct: 9444 tcggcggggagctggcgatg 9463



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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 143     ggaggagatcggcggggagc 162
               ||||||||||||||||||||
Sbjct: 2371899 ggaggagatcggcggggagc 2371880



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>ref|NM_197390.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0018B10.12), mRNA
          Length = 1740

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 143 ggaggagatcggcggggag 161
           |||||||||||||||||||
Sbjct: 43  ggaggagatcggcggggag 25



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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 147    gagatcggcggggagctggcgat 169
              ||||||||||| |||||||||||
Sbjct: 633068 gagatcggcggtgagctggcgat 633090



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>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12
          Length = 323450

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 109   gccagatcgccgccgcgat 127
             |||||||||||||||||||
Sbjct: 35456 gccagatcgccgccgcgat 35438



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>emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chromosome 1 Contains a novel
              gene, the 5' end of the CAMTA1 gene for calmodulin binding
              transcription activator 1, a ribosomal protein L37 (RPL37)
              pseudogene and a CpG island, complete sequence
          Length = 204394

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     ggggctcctctctctggcc 59
              |||||||||||||||||||
Sbjct: 203689 ggggctcctctctctggcc 203707



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>emb|AL512330.13| Human DNA sequence from clone RP11-334N17 on chromosome 1 Contains a
            novel gene, complete sequence
          Length = 61505

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 41   ggggctcctctctctggcc 59
            |||||||||||||||||||
Sbjct: 1295 ggggctcctctctctggcc 1313



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>emb|AL353618.11| Human DNA sequence from clone RP11-550K21 on chromosome 6, complete
             sequence
          Length = 32451

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    ggggctcctctctctggcc 59
             |||||||||||||||||||
Sbjct: 23256 ggggctcctctctctggcc 23238



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>gb|AY436326.1| Homo sapiens angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
             (ACE) gene, complete cds
          Length = 23424

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 88    ggcagggaggcccgccggg 106
             |||||||||||||||||||
Sbjct: 16351 ggcagggaggcccgccggg 16369



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>gb|AE005850.1| Caulobacter crescentus CB15 section 176 of 359 of the complete genome
          Length = 11211

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 107  gagccagatcgccgccgcg 125
            |||||||||||||||||||
Sbjct: 3413 gagccagatcgccgccgcg 3431



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>dbj|AB229438.1| Aspergillus oryzae cDNA, contig sequence: AoEST6318
          Length = 516

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 82  ggcatcggcagggaggcccgccg 104
           ||||| |||||||||||||||||
Sbjct: 456 ggcattggcagggaggcccgccg 434



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>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
          Length = 1282697

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 82    ggcatcggcagggaggcccgccg 104
             ||||| |||||||||||||||||
Sbjct: 86718 ggcattggcagggaggcccgccg 86740



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>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete
             sequence
          Length = 135789

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 143   ggaggagatcggcggggag 161
             |||||||||||||||||||
Sbjct: 53035 ggaggagatcggcggggag 53017



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 143      ggaggagatcggcggggag 161
                |||||||||||||||||||
Sbjct: 19595844 ggaggagatcggcggggag 19595826



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 112     agatcgccgccgcgatggagagc 134
               |||||||||||||| ||||||||
Sbjct: 7219355 agatcgccgccgcggtggagagc 7219333



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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 113     gatcgccgccgcgatggag 131
               |||||||||||||||||||
Sbjct: 2171534 gatcgccgccgcgatggag 2171516



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>gb|AC151487.3| Aotus nancymaae clone CH258-321B24, complete sequence
          Length = 167396

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 38     actggggctcctctctctg 56
              |||||||||||||||||||
Sbjct: 118284 actggggctcctctctctg 118302



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 143      ggaggagatcggcggggag 161
                |||||||||||||||||||
Sbjct: 19607120 ggaggagatcggcggggag 19607102


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,217,578
Number of Sequences: 3902068
Number of extensions: 1217578
Number of successful extensions: 96490
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95620
Number of HSP's gapped (non-prelim): 870
length of query: 193
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 171
effective length of database: 17,147,199,772
effective search space: 2932171161012
effective search space used: 2932171161012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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