Clone Name | bastl30a11 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467437.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3793 Score = 83.8 bits (42), Expect = 2e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 124 cgatggagagccccgtgaaggaggagatcggcggggagctggcgatggagatcgagtcga 183 ||||||||||||||| |||||||||| || |||||||||||||||||||||||||| | Sbjct: 238 cgatggagagccccgcgaaggaggaggcgggaggggagctggcgatggagatcgagtcca 297 Query: 184 gcgtcacggc 193 ||||||||| Sbjct: 298 ccgtcacggc 307
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 83.8 bits (42), Expect = 2e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 124 cgatggagagccccgtgaaggaggagatcggcggggagctggcgatggagatcgagtcga 183 ||||||||||||||| |||||||||| || |||||||||||||||||||||||||| | Sbjct: 29513959 cgatggagagccccgcgaaggaggaggcgggaggggagctggcgatggagatcgagtcca 29513900 Query: 184 gcgtcacggc 193 ||||||||| Sbjct: 29513899 ccgtcacggc 29513890
>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1038_A06 Length = 147836 Score = 83.8 bits (42), Expect = 2e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 124 cgatggagagccccgtgaaggaggagatcggcggggagctggcgatggagatcgagtcga 183 ||||||||||||||| |||||||||| || |||||||||||||||||||||||||| | Sbjct: 108989 cgatggagagccccgcgaaggaggaggcgggaggggagctggcgatggagatcgagtcca 108930 Query: 184 gcgtcacggc 193 ||||||||| Sbjct: 108929 ccgtcacggc 108920
>dbj|AK065045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I02, full insert sequence Length = 3793 Score = 83.8 bits (42), Expect = 2e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 124 cgatggagagccccgtgaaggaggagatcggcggggagctggcgatggagatcgagtcga 183 ||||||||||||||| |||||||||| || |||||||||||||||||||||||||| | Sbjct: 238 cgatggagagccccgcgaaggaggaggcgggaggggagctggcgatggagatcgagtcca 297 Query: 184 gcgtcacggc 193 ||||||||| Sbjct: 298 ccgtcacggc 307
>ref|XM_743362.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g01340) partial mRNA Length = 441 Score = 42.1 bits (21), Expect = 0.61 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 ggggagctggcgatggagatc 176 ||||||||||||||||||||| Sbjct: 343 ggggagctggcgatggagatc 363
>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence Length = 107448 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ctctaaaccctagcggcatc 87 |||||||||||||||||||| Sbjct: 6518 ctctaaaccctagcggcatc 6537
>gb|AE004855.1| Pseudomonas aeruginosa PAO1, section 416 of 529 of the complete genome Length = 11578 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 tcggcggggagctggcgatg 170 |||||||||||||||||||| Sbjct: 9444 tcggcggggagctggcgatg 9463
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 ggaggagatcggcggggagc 162 |||||||||||||||||||| Sbjct: 2371899 ggaggagatcggcggggagc 2371880
>ref|NM_197390.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0018B10.12), mRNA Length = 1740 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 143 ggaggagatcggcggggag 161 ||||||||||||||||||| Sbjct: 43 ggaggagatcggcggggag 25
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 147 gagatcggcggggagctggcgat 169 ||||||||||| ||||||||||| Sbjct: 633068 gagatcggcggtgagctggcgat 633090
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 109 gccagatcgccgccgcgat 127 ||||||||||||||||||| Sbjct: 35456 gccagatcgccgccgcgat 35438
>emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chromosome 1 Contains a novel gene, the 5' end of the CAMTA1 gene for calmodulin binding transcription activator 1, a ribosomal protein L37 (RPL37) pseudogene and a CpG island, complete sequence Length = 204394 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 ggggctcctctctctggcc 59 ||||||||||||||||||| Sbjct: 203689 ggggctcctctctctggcc 203707
>emb|AL512330.13| Human DNA sequence from clone RP11-334N17 on chromosome 1 Contains a novel gene, complete sequence Length = 61505 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 ggggctcctctctctggcc 59 ||||||||||||||||||| Sbjct: 1295 ggggctcctctctctggcc 1313
>emb|AL353618.11| Human DNA sequence from clone RP11-550K21 on chromosome 6, complete sequence Length = 32451 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 ggggctcctctctctggcc 59 ||||||||||||||||||| Sbjct: 23256 ggggctcctctctctggcc 23238
>gb|AY436326.1| Homo sapiens angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 (ACE) gene, complete cds Length = 23424 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 ggcagggaggcccgccggg 106 ||||||||||||||||||| Sbjct: 16351 ggcagggaggcccgccggg 16369
>gb|AE005850.1| Caulobacter crescentus CB15 section 176 of 359 of the complete genome Length = 11211 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 gagccagatcgccgccgcg 125 ||||||||||||||||||| Sbjct: 3413 gagccagatcgccgccgcg 3431
>dbj|AB229438.1| Aspergillus oryzae cDNA, contig sequence: AoEST6318 Length = 516 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 82 ggcatcggcagggaggcccgccg 104 ||||| ||||||||||||||||| Sbjct: 456 ggcattggcagggaggcccgccg 434
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 Length = 1282697 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 82 ggcatcggcagggaggcccgccg 104 ||||| ||||||||||||||||| Sbjct: 86718 ggcattggcagggaggcccgccg 86740
>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete sequence Length = 135789 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 143 ggaggagatcggcggggag 161 ||||||||||||||||||| Sbjct: 53035 ggaggagatcggcggggag 53017
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 143 ggaggagatcggcggggag 161 ||||||||||||||||||| Sbjct: 19595844 ggaggagatcggcggggag 19595826
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 112 agatcgccgccgcgatggagagc 134 |||||||||||||| |||||||| Sbjct: 7219355 agatcgccgccgcggtggagagc 7219333
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 gatcgccgccgcgatggag 131 ||||||||||||||||||| Sbjct: 2171534 gatcgccgccgcgatggag 2171516
>gb|AC151487.3| Aotus nancymaae clone CH258-321B24, complete sequence Length = 167396 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 actggggctcctctctctg 56 ||||||||||||||||||| Sbjct: 118284 actggggctcctctctctg 118302
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 143 ggaggagatcggcggggag 161 ||||||||||||||||||| Sbjct: 19607120 ggaggagatcggcggggag 19607102 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,217,578 Number of Sequences: 3902068 Number of extensions: 1217578 Number of successful extensions: 96490 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95620 Number of HSP's gapped (non-prelim): 870 length of query: 193 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 171 effective length of database: 17,147,199,772 effective search space: 2932171161012 effective search space used: 2932171161012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)