>ST18_MOUSE (Q80TY4) Suppression of tumorigenicity protein 18|
          Length = 1045

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 242 SAGFYNTAGSKEGW-TPQTFTSSRKSRAEHKKQSIYNFLDEEDIKDMGGNA 391
           +A FY     +EGW  P  ++ S     E K++   NFL+  + K   G A
Sbjct: 651 NAAFYQALSDQEGWNVPINYSKSHGKTEEEKEKDPVNFLENLEEKKFAGEA 701

>Y1421_LISIN (Q92BX1) UPF0176 protein Lin1421|
          Length = 319

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = +2

Query: 68  DQDLVVYGTPIEREEDISARKRRAVADAGQLRALPAWKQEVRDEEGRRRFHGAFTGGFS- 244
           D+D V+     + E DI   +     D    R LP W ++ RD+   ++     TGG   
Sbjct: 125 DEDTVILDARNDYEFDIGHFRGAVRPDIQNFRELPGWIEDNRDQLEDKKIVTYCTGGIRC 184

Query: 245 ---AGFYNTAGSKE 277
              +G+  TAG ++
Sbjct: 185 EKFSGWLKTAGFED 198

>ASB2_MOUSE (Q8K0L0) Ankyrin repeat and SOCS box protein 2 (ASB-2)|
          Length = 634

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +2

Query: 299 TSSRKSRAEHKKQSIYNFLDEEDIKDMGGNALETSQQYDTFGFTAAEHARKQASKEXNER 478
           T  R+    H++ S+Y+ L EE++  M   A+E S    T G T AE     AS + N +
Sbjct: 7   TRGRQRAIGHEEYSLYSSLSEEELLQM---AIEQSLADKTRGPTPAE---ASASSQTNHQ 60

Query: 479 P 481
           P
Sbjct: 61  P 61

>PRP5_EMENI (Q5BDW4) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC|
           3.6.1.-)
          Length = 1173

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 38/156 (24%), Positives = 56/156 (35%), Gaps = 15/156 (9%)
 Frame = +2

Query: 62  DDDQDLVVYGTPIEREEDISARKRRAVADAGQLRA-----LPAWKQEVRDEEGRRRFHGA 226
           DD +D      P  RE    A   R      + RA     L AWKQ+   E+ R++    
Sbjct: 139 DDSRDRTRGAEPKSREASTPAIPTRTGPTDDEKRAERLAKLEAWKQKQAAEKERKQKEAE 198

Query: 227 FTGGFSAGFYNTAGSKEGWTPQTFTSSRKSRAEHKKQSIYNFLDEEDIKDMGGNALETSQ 406
            +GG           K G +P   +S +    +    +   +  + D K +  NA +T  
Sbjct: 199 ASGG-PRNILEEIDRKSGLSP-AVSSPQSPATQGVDAAPAAYAGKFDPKAIAKNAAQTPA 256

Query: 407 QYDTFG----------FTAAEHARKQASKEXNERPS 484
                G           + A+ AR QASK     PS
Sbjct: 257 APSVLGNDVAVPSSAKTSNAQTARVQASKASGNAPS 292

>Y1403_LISMF (Q71ZT6) UPF0176 protein LMOf2365_1403|
          Length = 319

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +2

Query: 68  DQDLVVYGTPIEREEDISARKRRAVADAGQLRALPAWKQEVRDEEGRRRFHGAFTGGFS- 244
           D+D V+     + E DI   +     D    R LP W ++ R++   ++     TGG   
Sbjct: 125 DEDTVILDARNDYEFDIGHFRGAVRPDIQNFRELPGWIEDNREQLADKKIVTYCTGGIRC 184

Query: 245 ---AGFYNTAG 268
              +G+  TAG
Sbjct: 185 EKFSGWLKTAG 195

>Y1384_LISMO (Q8Y7A4) UPF0176 protein Lmo1384|
          Length = 319

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +2

Query: 68  DQDLVVYGTPIEREEDISARKRRAVADAGQLRALPAWKQEVRDEEGRRRFHGAFTGGFS- 244
           D+D V+     + E DI   +     D    R LP W ++ R++   ++     TGG   
Sbjct: 125 DEDTVILDARNDYEFDIGHFRGAVRPDIQNFRELPGWIEDNREQLADKKIVTYCTGGIRC 184

Query: 245 ---AGFYNTAG 268
              +G+  TAG
Sbjct: 185 EKFSGWLKTAG 195

>ASB2_RAT (Q5U2S6) Ankyrin repeat and SOCS box protein 2 (ASB-2)|
          Length = 634

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 299 TSSRKSRAEHKKQSIYNFLDEEDIKDMGGNALETSQQYDTFGFTAAEHARKQASKEXNER 478
           T  R+    H++ S+Y+ L EE++  M   A+E S    T G T AE      S + N +
Sbjct: 7   TRGRQRAIGHEEYSLYSSLSEEELVQM---AIEQSLADKTRGPTPAE---TSVSSQTNHQ 60

Query: 479 PSAI 490
           P  I
Sbjct: 61  PGHI 64

>Y396_MYCGE (P47636) Hypothetical lacAB/rpiB family protein MG396|
          Length = 152

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 308 RKSRAEHKKQSIYNFLDEEDIKDMGGNALETSQQYDTFGFTAAEHARKQASKE 466
           +K  +EH K   +N      + D+G N  + +  Y  F F  A+  +K + K+
Sbjct: 17  KKIISEHLKTKQFN------VVDLGPNYFDANDDYPDFAFLVADKVKKNSDKD 63

>YK14_CAEEL (P34338) Hypothetical protein C15H7.4|
          Length = 327

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +2

Query: 266 GSKEGWTPQTFTSSRKSRAEHKKQSIYNFLDE--EDIKDMGGNALETSQQYDTFGFTAAE 439
           GS+EG+       S K   E KK+ + N  D+  E+ K    N  +T  +  T    +  
Sbjct: 157 GSREGYV----APSEKGSNEKKKEVVPNGGDKSVENKKGSDRNVKKTPSKTVTKPLLSES 212

Query: 440 HARKQASKEXNERPSAIPGPVPDE 511
             RK+A      +   +P P  DE
Sbjct: 213 RKRKEAKTLATTQSQDLPAPTKDE 236


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,067,345
Number of Sequences: 219361
Number of extensions: 1132711
Number of successful extensions: 4712
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4704
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)