Clone Name | bastl30a10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK103574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132P04, full insert sequence Length = 3564 Score = 478 bits (241), Expect = e-132 Identities = 399/452 (88%) Strand = Plus / Plus Query: 60 acgacgacgaccaggacctcgtggtctacgggacaccgatcgagcgggaggaggacatct 119 ||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||| || Sbjct: 139 acgacgacgacgaggatctcgtcgtctacgggacgccgatcgagcgggaggaggacacct 198 Query: 120 ccgcccgcaagcgccgcgccgtcgccgacgcaggccagctccgggccctccccgcctgga 179 |||| ||||||||||| ||||||||||| || ||||||||||| |||||||||||||||| Sbjct: 199 ccgcacgcaagcgccgggccgtcgccgaggccggccagctccgcgccctccccgcctgga 258 Query: 180 agcaggaggtcagggatgaggaaggacggagaagatttcatggtgcatttactggaggct 239 |||||||||| || ||||||||||| || ||||| ||||||||||||||||| ||||| | Sbjct: 259 agcaggaggtgagagatgaggaagggcgaagaaggtttcatggtgcatttacgggaggtt 318 Query: 240 tctctgctggcttctacaatactgctggctcaaaagagggatggacgccacagacattca 299 |||| ||||| | |||||||| | |||| |||||||||||||||| |||||||| || | Sbjct: 319 tctcagctggttattacaataccgttggcacaaaagagggatggactccacagactttta 378 Query: 300 catcttcacgaaaaagtagagctgagcataaaaagcaaagcatatataattttcttgatg 359 |||| ||||| |||| ||| |||||| ||||||||||||||||| | |||||| |||| Sbjct: 379 catcgtcacggaaaaatagggctgagatgaaaaagcaaagcatatacagttttctcgatg 438 Query: 360 aggaagatatcaaggatatgggaggtaatgccttggaaacatctcaacagtatgatacat 419 ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 439 aggaagacataaaggatatgggaggtaatgccttggaaacatctcagcagtatgatacat 498 Query: 420 tcggttttacagctgcagagcatgccagaaaacaagcatccaaggaacanaatgagagac 479 | |||||||||||| |||| |||||| |||| ||||| |||||||| || || ||||||| Sbjct: 499 ttggttttacagctacagaacatgcccgaaagcaagcttccaaggagcagaaagagagac 558 Query: 480 catcagctattcctggacctgttcctgatgag 511 |||| ||||| ||||| ||| ||||||||||| Sbjct: 559 catcggctatacctgggcctattcctgatgag 590
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 178 bits (90), Expect = 1e-41 Identities = 120/130 (92%) Strand = Plus / Minus Query: 60 acgacgacgaccaggacctcgtggtctacgggacaccgatcgagcgggaggaggacatct 119 ||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||| || Sbjct: 16617912 acgacgacgacgaggatctcgtcgtctacgggacgccgatcgagcgggaggaggacacct 16617853 Query: 120 ccgcccgcaagcgccgcgccgtcgccgacgcaggccagctccgggccctccccgcctgga 179 |||| ||||||||||| ||||||||||| || ||||||||||| |||||||||||||||| Sbjct: 16617852 ccgcacgcaagcgccgggccgtcgccgaggccggccagctccgcgccctccccgcctgga 16617793 Query: 180 agcaggaggt 189 |||||||||| Sbjct: 16617792 agcaggaggt 16617783 Score = 133 bits (67), Expect = 6e-28 Identities = 96/106 (90%) Strand = Plus / Minus Query: 372 aggatatgggaggtaatgccttggaaacatctcaacagtatgatacattcggttttacag 431 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 16615337 aggatatgggaggtaatgccttggaaacatctcagcagtatgatacatttggttttacag 16615278 Query: 432 ctgcagagcatgccagaaaacaagcatccaaggaacanaatgagag 477 || |||| |||||| |||| ||||| |||||||| || || ||||| Sbjct: 16615277 ctacagaacatgcccgaaagcaagcttccaaggagcagaaagagag 16615232 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 194 gatgaggaaggacggagaagatttcatggtgcatttactggaggcttctctgctggcttc 253 ||||||||||| || ||||| ||||||||||||||||| ||||| ||||| ||||| | Sbjct: 16617130 gatgaggaagggcgaagaaggtttcatggtgcatttacgggaggtttctcagctggttat 16617071 Query: 254 tacaatactgctggctcaaaagaggg 279 |||||||| | |||| |||||||||| Sbjct: 16617070 tacaataccgttggcacaaaagaggg 16617045 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 278 ggatggacgccacagacattcacatcttcacgaaaaagtagagctgagcataaaaagcaa 337 |||||||| |||||||| || ||||| ||||| |||| ||| |||||| ||||||||| Sbjct: 16616951 ggatggactccacagacttttacatcgtcacggaaaaatagggctgagatgaaaaagcaa 16616892 Query: 338 agcatatataattttcttgatgaggaaga 366 |||||||| | |||||| ||||||||||| Sbjct: 16616891 agcatatacagttttctcgatgaggaaga 16616863 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 476 agaccatcagctattcctggacctgttcctgatgag 511 |||||||| ||||| ||||| ||| ||||||||||| Sbjct: 16614876 agaccatcggctatacctgggcctattcctgatgag 16614841
>dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0583E12 Length = 152449 Score = 178 bits (90), Expect = 1e-41 Identities = 120/130 (92%) Strand = Plus / Minus Query: 60 acgacgacgaccaggacctcgtggtctacgggacaccgatcgagcgggaggaggacatct 119 ||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||| || Sbjct: 113892 acgacgacgacgaggatctcgtcgtctacgggacgccgatcgagcgggaggaggacacct 113833 Query: 120 ccgcccgcaagcgccgcgccgtcgccgacgcaggccagctccgggccctccccgcctgga 179 |||| ||||||||||| ||||||||||| || ||||||||||| |||||||||||||||| Sbjct: 113832 ccgcacgcaagcgccgggccgtcgccgaggccggccagctccgcgccctccccgcctgga 113773 Query: 180 agcaggaggt 189 |||||||||| Sbjct: 113772 agcaggaggt 113763 Score = 133 bits (67), Expect = 6e-28 Identities = 96/106 (90%) Strand = Plus / Minus Query: 372 aggatatgggaggtaatgccttggaaacatctcaacagtatgatacattcggttttacag 431 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 111317 aggatatgggaggtaatgccttggaaacatctcagcagtatgatacatttggttttacag 111258 Query: 432 ctgcagagcatgccagaaaacaagcatccaaggaacanaatgagag 477 || |||| |||||| |||| ||||| |||||||| || || ||||| Sbjct: 111257 ctacagaacatgcccgaaagcaagcttccaaggagcagaaagagag 111212 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 194 gatgaggaaggacggagaagatttcatggtgcatttactggaggcttctctgctggcttc 253 ||||||||||| || ||||| ||||||||||||||||| ||||| ||||| ||||| | Sbjct: 113110 gatgaggaagggcgaagaaggtttcatggtgcatttacgggaggtttctcagctggttat 113051 Query: 254 tacaatactgctggctcaaaagaggg 279 |||||||| | |||| |||||||||| Sbjct: 113050 tacaataccgttggcacaaaagaggg 113025 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 278 ggatggacgccacagacattcacatcttcacgaaaaagtagagctgagcataaaaagcaa 337 |||||||| |||||||| || ||||| ||||| |||| ||| |||||| ||||||||| Sbjct: 112931 ggatggactccacagacttttacatcgtcacggaaaaatagggctgagatgaaaaagcaa 112872 Query: 338 agcatatataattttcttgatgaggaaga 366 |||||||| | |||||| ||||||||||| Sbjct: 112871 agcatatacagttttctcgatgaggaaga 112843 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 476 agaccatcagctattcctggacctgttcctgatgag 511 |||||||| ||||| ||||| ||| ||||||||||| Sbjct: 110856 agaccatcggctatacctgggcctattcctgatgag 110821
>ref|XM_879232.1| PREDICTED: Bos taurus similar to G patch domain containing 1, transcript variant 2 (LOC518738), mRNA Length = 2780 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 213 gatttcatggtgcatttactggaggcttctctgctggcttctacaatactgctggctcaa 272 |||||||||| || |||| |||||| ||||||||||| | || ||| |||| |||||||| Sbjct: 157 gatttcatggagcctttagtggaggtttctctgctggttacttcaacactgttggctcaa 216 Query: 273 aagagggatggac 285 |||| |||||||| Sbjct: 217 aagaaggatggac 229
>ref|XM_596938.2| PREDICTED: Bos taurus similar to G patch domain containing 1, transcript variant 1 (LOC518738), mRNA Length = 3053 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 213 gatttcatggtgcatttactggaggcttctctgctggcttctacaatactgctggctcaa 272 |||||||||| || |||| |||||| ||||||||||| | || ||| |||| |||||||| Sbjct: 157 gatttcatggagcctttagtggaggtttctctgctggttacttcaacactgttggctcaa 216 Query: 273 aagagggatggac 285 |||| |||||||| Sbjct: 217 aagaaggatggac 229
>gb|BC114043.1| Bos taurus cDNA clone MGC:137431 IMAGE:8162658, complete cds Length = 3234 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 213 gatttcatggtgcatttactggaggcttctctgctggcttctacaatactgctggctcaa 272 |||||||||| || |||| |||||| ||||||||||| | || ||| |||| |||||||| Sbjct: 161 gatttcatggagcctttagtggaggtttctctgctggttacttcaacactgttggctcaa 220 Query: 273 aagagggatggac 285 |||| |||||||| Sbjct: 221 aagaaggatggac 233
>ref|NM_018025.2| Homo sapiens G patch domain containing 1 (GPATC1), mRNA Length = 3390 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 227 tttactggaggcttctctgctggcttctacaatactgctggctcaaaagagggatggac 285 |||| |||||| ||||||||||| | || |||||||| |||||||||||| |||||||| Sbjct: 471 tttagtggaggtttctctgctggatacttcaatactgttggctcaaaagaaggatggac 529
>dbj|AK096005.1| Homo sapiens cDNA FLJ38686 fis, clone KIDNE2000947 Length = 2664 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 227 tttactggaggcttctctgctggcttctacaatactgctggctcaaaagagggatggac 285 |||| |||||| ||||||||||| | || |||||||| |||||||||||| |||||||| Sbjct: 165 tttagtggaggtttctctgctggatacttcaatactgttggctcaaaagaaggatggac 223
>gb|BC006108.1| Homo sapiens G patch domain containing 1, mRNA (cDNA clone MGC:12961 IMAGE:3029084), complete cds Length = 3390 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 227 tttactggaggcttctctgctggcttctacaatactgctggctcaaaagagggatggac 285 |||| |||||| ||||||||||| | || |||||||| |||||||||||| |||||||| Sbjct: 471 tttagtggaggtttctctgctggatacttcaatactgttggctcaaaagaaggatggac 529
>gb|AF434677.1| Homo sapiens evolutionarily conserved G-patch domain containing protein mRNA, complete cds Length = 3060 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 227 tttactggaggcttctctgctggcttctacaatactgctggctcaaaagagggatggac 285 |||| |||||| ||||||||||| | || |||||||| |||||||||||| |||||||| Sbjct: 157 tttagtggaggtttctctgctggatacttcaatactgttggctcaaaagaaggatggac 215
>ref|NM_122214.2| Arabidopsis thaliana RNA binding AT5G23080 transcript variant AT5G23080.1 mRNA, complete cds Length = 3413 Score = 58.0 bits (29), Expect = 3e-05 Identities = 110/137 (80%) Strand = Plus / Plus Query: 167 ctccccgcctggaagcaggaggtcagggatgaggaaggacggagaagatttcatggtgca 226 ||||| || |||||||| ||||| | ||||| ||||| || ||||| || ||||| ||| Sbjct: 154 ctccctgcttggaagcaagaggtgactgatgaagaaggccgtagaaggttccatggagca 213 Query: 227 tttactggaggcttctctgctggcttctacaatactgctggctcaaaagagggatggacg 286 |||||||| || | |||||||| | |||||||| | ||| ||||||||||| ||| | Sbjct: 214 tttactggtggatattctgctgggtattacaatacagttggatcaaaagagggctgggct 273 Query: 287 ccacagacattcacatc 303 |||||| |||| ||||| Sbjct: 274 ccacagtcatttacatc 290 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 471 atgagagaccatcagctattcctggacctgttcctga 507 ||||||| |||||||| |||||||| ||||||||||| Sbjct: 458 atgagaggccatcagccattcctggccctgttcctga 494
>ref|NM_001036849.1| Arabidopsis thaliana RNA binding AT5G23080 transcript variant AT5G23080.2 mRNA, complete cds Length = 3323 Score = 58.0 bits (29), Expect = 3e-05 Identities = 110/137 (80%) Strand = Plus / Plus Query: 167 ctccccgcctggaagcaggaggtcagggatgaggaaggacggagaagatttcatggtgca 226 ||||| || |||||||| ||||| | ||||| ||||| || ||||| || ||||| ||| Sbjct: 154 ctccctgcttggaagcaagaggtgactgatgaagaaggccgtagaaggttccatggagca 213 Query: 227 tttactggaggcttctctgctggcttctacaatactgctggctcaaaagagggatggacg 286 |||||||| || | |||||||| | |||||||| | ||| ||||||||||| ||| | Sbjct: 214 tttactggtggatattctgctgggtattacaatacagttggatcaaaagagggctgggct 273 Query: 287 ccacagacattcacatc 303 |||||| |||| ||||| Sbjct: 274 ccacagtcatttacatc 290 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 471 atgagagaccatcagctattcctggacctgttcctga 507 ||||||| |||||||| |||||||| ||||||||||| Sbjct: 458 atgagaggccatcagccattcctggccctgttcctga 494
>ref|XM_512571.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC455928), mRNA Length = 3621 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 233 ggaggcttctctgctggcttctacaatactgctggctcaaaagagggatggac 285 ||||| ||||||||||| | || |||||||| |||||||||||| |||||||| Sbjct: 388 ggaggtttctctgctggatacttcaatactgttggctcaaaagaaggatggac 440
>gb|AY518689.1| Arabidopsis thaliana TOUGH mRNA, complete cds Length = 2703 Score = 58.0 bits (29), Expect = 3e-05 Identities = 110/137 (80%) Strand = Plus / Plus Query: 167 ctccccgcctggaagcaggaggtcagggatgaggaaggacggagaagatttcatggtgca 226 ||||| || |||||||| ||||| | ||||| ||||| || ||||| || ||||| ||| Sbjct: 115 ctccctgcttggaagcaagaggtgactgatgaagaaggccgtagaaggttccatggagca 174 Query: 227 tttactggaggcttctctgctggcttctacaatactgctggctcaaaagagggatggacg 286 |||||||| || | |||||||| | |||||||| | ||| ||||||||||| ||| | Sbjct: 175 tttactggtggatattctgctgggtattacaatacagttggatcaaaagagggctgggct 234 Query: 287 ccacagacattcacatc 303 |||||| |||| ||||| Sbjct: 235 ccacagtcatttacatc 251 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 471 atgagagaccatcagctattcctggacctgttcctga 507 ||||||| |||||||| |||||||| ||||||||||| Sbjct: 419 atgagaggccatcagccattcctggccctgttcctga 455
>gb|BT008588.1| Arabidopsis thaliana clone U50866 unknown protein (At5g23080) mRNA, complete cds Length = 2824 Score = 58.0 bits (29), Expect = 3e-05 Identities = 110/137 (80%) Strand = Plus / Plus Query: 167 ctccccgcctggaagcaggaggtcagggatgaggaaggacggagaagatttcatggtgca 226 ||||| || |||||||| ||||| | ||||| ||||| || ||||| || ||||| ||| Sbjct: 115 ctccctgcttggaagcaagaggtgactgatgaagaaggccgtagaaggttccatggagca 174 Query: 227 tttactggaggcttctctgctggcttctacaatactgctggctcaaaagagggatggacg 286 |||||||| || | |||||||| | |||||||| | ||| ||||||||||| ||| | Sbjct: 175 tttactggtggatattctgctgggtattacaatacagttggatcaaaagagggctgggct 234 Query: 287 ccacagacattcacatc 303 |||||| |||| ||||| Sbjct: 235 ccacagtcatttacatc 251 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 471 atgagagaccatcagctattcctggacctgttcctga 507 ||||||| |||||||| |||||||| ||||||||||| Sbjct: 419 atgagaggccatcagccattcctggccctgttcctga 455
>dbj|AK118129.1| Arabidopsis thaliana At5g23080 mRNA for unknown protein, complete cds, clone: RAFL19-42-D19 Length = 3080 Score = 58.0 bits (29), Expect = 3e-05 Identities = 110/137 (80%) Strand = Plus / Plus Query: 167 ctccccgcctggaagcaggaggtcagggatgaggaaggacggagaagatttcatggtgca 226 ||||| || |||||||| ||||| | ||||| ||||| || ||||| || ||||| ||| Sbjct: 154 ctccctgcttggaagcaagaggtgactgatgaagaaggccgtagaaggttccatggagca 213 Query: 227 tttactggaggcttctctgctggcttctacaatactgctggctcaaaagagggatggacg 286 |||||||| || | |||||||| | |||||||| | ||| ||||||||||| ||| | Sbjct: 214 tttactggtggatattctgctgggtattacaatacagttggatcaaaagagggctgggct 273 Query: 287 ccacagacattcacatc 303 |||||| |||| ||||| Sbjct: 274 ccacagtcatttacatc 290 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 471 atgagagaccatcagctattcctggacctgttcctga 507 ||||||| |||||||| |||||||| ||||||||||| Sbjct: 458 atgagaggccatcagccattcctggccctgttcctga 494
>emb|AL834465.1|HSM805568 Homo sapiens mRNA; cDNA DKFZp762I1110 (from clone DKFZp762I1110) Length = 3067 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 233 ggaggcttctctgctggcttctacaatactgctggctcaaaagagggatggac 285 ||||| ||||||||||| | || |||||||| |||||||||||| |||||||| Sbjct: 168 ggaggtttctctgctggatacttcaatactgttggctcaaaagaaggatggac 220
>emb|AL512487.1|SPAC20H4 S.pombe chromosome I cosmid c20H4 Length = 20674 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 212 agatttcatggtgcatttactggaggcttctctgctggcttctacaatactgctggctca 271 ||||||||||||||||||||||| || || |||||||||| | ||||| | ||| ||| Sbjct: 9409 agatttcatggtgcatttactggtggattttctgctggctattttaatacggttggttca 9350 Query: 272 aaagaggg 279 |||||||| Sbjct: 9349 aaagaggg 9342
>ref|NM_001019057.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC20H4.06c), partial mRNA Length = 1605 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 212 agatttcatggtgcatttactggaggcttctctgctggct 251 ||||||||||||||||||||||| || || |||||||||| Sbjct: 151 agatttcatggtgcatttactggtggattttctgctggct 190
>emb|AJ719845.1| Gallus gallus mRNA for hypothetical protein, clone 7d10 Length = 1421 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 215 tttcatggtgcatttactggaggcttctctgctgg 249 |||||||| ||||||||||| |||||||||||||| Sbjct: 180 tttcatggagcatttactggtggcttctctgctgg 214
>gb|AC008521.5|AC008521 Homo sapiens chromosome 19 clone CTC-461H2, complete sequence Length = 147514 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 227 tttactggaggcttctctgctggcttctacaatactgctggctcaaaaga 276 |||| |||||| ||||||||||| | || |||||||| |||||||||||| Sbjct: 71490 tttagtggaggtttctctgctggatacttcaatactgttggctcaaaaga 71539
>ref|XM_862890.1| PREDICTED: Canis familiaris similar to G patch domain containing 1, transcript variant 3 (LOC476495), mRNA Length = 3057 Score = 50.1 bits (25), Expect = 0.007 Identities = 61/73 (83%) Strand = Plus / Plus Query: 213 gatttcatggtgcatttactggaggcttctctgctggcttctacaatactgctggctcaa 272 |||||||||| || |||| |||||| ||||||||||| | || ||| |||| ||| |||| Sbjct: 157 gatttcatggagcctttagtggaggtttctctgctgggtacttcaacactgttggttcaa 216 Query: 273 aagagggatggac 285 | || |||||||| Sbjct: 217 aggaaggatggac 229
>ref|XM_848771.1| PREDICTED: Canis familiaris similar to G patch domain containing 1, transcript variant 2 (LOC476495), mRNA Length = 3057 Score = 50.1 bits (25), Expect = 0.007 Identities = 61/73 (83%) Strand = Plus / Plus Query: 213 gatttcatggtgcatttactggaggcttctctgctggcttctacaatactgctggctcaa 272 |||||||||| || |||| |||||| ||||||||||| | || ||| |||| ||| |||| Sbjct: 157 gatttcatggagcctttagtggaggtttctctgctgggtacttcaacactgttggttcaa 216 Query: 273 aagagggatggac 285 | || |||||||| Sbjct: 217 aggaaggatggac 229
>gb|AC183276.3| Pan troglodytes BAC clone CH251-50A9 from chromosome 19, complete sequence Length = 180204 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 233 ggaggcttctctgctggcttctacaatactgctggctcaaaaga 276 ||||| ||||||||||| | || |||||||| |||||||||||| Sbjct: 36416 ggaggtttctctgctggatacttcaatactgttggctcaaaaga 36373
>gb|AC137819.19| Medicago truncatula clone mth2-21i24, complete sequence Length = 116989 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 194 gatgaggaaggacggagaagatttcatggtgcatttactggaggcttctctgctgg 249 ||||| ||||| |||||||||| || ||||||||||| ||||| || |||||||| Sbjct: 51561 gatgacgaagggaggagaagattccacggtgcatttacaggaggtttttctgctgg 51616
>gb|AE005812.1| Caulobacter crescentus CB15 section 138 of 359 of the complete genome Length = 10602 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 120 ccgcccgcaagcgccgcgccgtcgccg 146 ||||||||||| ||||||||||||||| Sbjct: 7241 ccgcccgcaagggccgcgccgtcgccg 7267
>ref|XM_473394.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 546 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 acgacgacgaccaggacctcgt 81 |||||||||||||||||||||| Sbjct: 439 acgacgacgaccaggacctcgt 460
>emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence Length = 141787 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 60 acgacgacgaccaggacctcgt 81 |||||||||||||||||||||| Sbjct: 43384 acgacgacgaccaggacctcgt 43363
>gb|AC084091.5| Homo sapiens chromosome 8, clone CTD-2532E22, complete sequence Length = 183486 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 aggaggtcagggatgaggaagg 204 |||||||||||||||||||||| Sbjct: 46250 aggaggtcagggatgaggaagg 46229
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 60 acgacgacgaccaggacctcgt 81 |||||||||||||||||||||| Sbjct: 27307456 acgacgacgaccaggacctcgt 27307435 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 ggccatggcttcccacgacg 65 |||||||||||||||||||| Sbjct: 16433644 ggccatggcttcccacgacg 16433663
>ref|XM_624550.1| PREDICTED: Apis mellifera similar to CG8833-PA (LOC552172), mRNA Length = 2856 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Plus Query: 212 agatttcatggtgcatttactggaggcttctctgctgg 249 |||||||||||||||||||| || || || |||||||| Sbjct: 133 agatttcatggtgcatttacaggtggtttttctgctgg 170
>dbj|AB006708.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYJ24 Length = 78844 Score = 44.1 bits (22), Expect = 0.45 Identities = 70/86 (81%) Strand = Plus / Minus Query: 194 gatgaggaaggacggagaagatttcatggtgcatttactggaggcttctctgctggcttc 253 ||||| ||||| || ||||| || ||||| ||||||||||| || | |||||||| | Sbjct: 38073 gatgaagaaggccgtagaaggttccatggagcatttactggtggatattctgctgggtat 38014 Query: 254 tacaatactgctggctcaaaagaggg 279 |||||||| | ||| ||||||||||| Sbjct: 38013 tacaatacagttggatcaaaagaggg 37988 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 479 ccatcagctattcctggacctgttcctga 507 |||||||| |||||||| ||||||||||| Sbjct: 37416 ccatcagccattcctggccctgttcctga 37388
>dbj|AK119259.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-H05, full insert sequence Length = 827 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 acgacgacgaccaggacctcgt 81 |||||||||||||||||||||| Sbjct: 520 acgacgacgaccaggacctcgt 541
>gb|AC167023.2| Mus musculus BAC clone RP23-21J7 from chromosome 7, complete sequence Length = 214762 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 gatgaggaaggacggagaaga 214 ||||||||||||||||||||| Sbjct: 35753 gatgaggaaggacggagaaga 35733
>gb|AC122001.2| Mus musculus BAC clone RP24-330I1 from chromosome 7, complete sequence Length = 155051 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 gatgaggaaggacggagaaga 214 ||||||||||||||||||||| Sbjct: 79960 gatgaggaaggacggagaaga 79940
>gb|AY330485.1| Saccharopolyspora erythraea amino acid permease gene, partial cds; transport protein, helix-turn-helix regulator (pkeRI), P450 monooxygenase (pkePI), P450 monooxygenase (pkePII), P450 monooxygenase (pkePIII), type I PKS (pkeAI), type I PKS (pkeAII), and type I PKS (pkeAIII) genes, complete cds; pkeAIV gene, complete sequence; type I PKS, monooxygenases, transporter, ketoacyl-ACP synthase (typeII), acyl carrier protien, amino transferase, and DNA-binding protein genes, complete cds; and unknown genes Length = 68451 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 134 cgcgccgtcgccgacgcaggccagc 158 |||||||||||||||| |||||||| Sbjct: 64165 cgcgccgtcgccgacgaaggccagc 64189
>gb|AC151265.3| Mus musculus BAC clone RP24-372H7 from chromosome 17, complete sequence Length = 191739 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 ggcttctctgctggcttctac 256 ||||||||||||||||||||| Sbjct: 25180 ggcttctctgctggcttctac 25160
>gb|AE005828.1| Caulobacter crescentus CB15 section 154 of 359 of the complete genome Length = 11039 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 ccgcaagcgccgcgccgtcgc 144 ||||||||||||||||||||| Sbjct: 1531 ccgcaagcgccgcgccgtcgc 1511
>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence Length = 202543 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 cacagacattcacatcttcac 308 ||||||||||||||||||||| Sbjct: 171807 cacagacattcacatcttcac 171827
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 gcgccgcgccgtcgccgacgc 150 ||||||||||||||||||||| Sbjct: 862898 gcgccgcgccgtcgccgacgc 862878
>emb|CT010473.14| Mouse DNA sequence from clone RP23-238D5 on chromosome 17, complete sequence Length = 173998 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 ggcttctctgctggcttctac 256 ||||||||||||||||||||| Sbjct: 101661 ggcttctctgctggcttctac 101641
>ref|NM_194782.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNAa0087H07.6), mRNA Length = 2187 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 gcgccgcgccgtcgccgacg 149 |||||||||||||||||||| Sbjct: 29 gcgccgcgccgtcgccgacg 48
>ref|XM_363352.1| Magnaporthe grisea 70-15 hypothetical protein (MG01278.4) partial mRNA Length = 3633 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 tggaagcaggaggtcagggatgag 199 |||||||||||||| ||||||||| Sbjct: 133 tggaagcaggaggtgagggatgag 156
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 ccgcaagcgccgcgccgtcg 143 |||||||||||||||||||| Sbjct: 1321913 ccgcaagcgccgcgccgtcg 1321932
>gb|AC003003.1|HUAC003003 Human Chromosome 16 BAC clone CIT987SK-254P9, complete sequence Length = 130381 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 actggaggcttctctgctggcttc 253 |||||||||| ||||||||||||| Sbjct: 98066 actggaggctgctctgctggcttc 98043
>gb|AC124672.9| Mus musculus chromosome 1, clone RP23-328G14, complete sequence Length = 249008 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 aattttcttgatgaggaaga 366 |||||||||||||||||||| Sbjct: 115660 aattttcttgatgaggaaga 115679
>emb|AL672207.1| Human DNA sequence from clone RP1-232L22 on chromosome X Contains the 3' end of the NXF5 gene for nuclear RNA export factor 5 and a glycerol kinase (GK) pseudogene, complete sequence Length = 60101 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 acagacattcacatcttcac 308 |||||||||||||||||||| Sbjct: 17404 acagacattcacatcttcac 17385
>emb|AL359820.12| Human DNA sequence from clone RP11-455C19 on chromosome 1 Contains the 5' end of the BCAR3 gene for breast cancer anti-estrogen resistance 3 and a CpG island, complete sequence Length = 78103 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gggccctccccgcctggaag 181 |||||||||||||||||||| Sbjct: 64477 gggccctccccgcctggaag 64458
>emb|AL365209.13| Human DNA sequence from clone RP11-174G17 on chromosome 1 Contains 5' end of a novel gene, 5' end of a gene for a novel protein and a CpG island, complete sequence Length = 115291 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 atttactggaggcttctctg 245 |||||||||||||||||||| Sbjct: 88596 atttactggaggcttctctg 88577
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cgccgcgccgtcgccgacgc 150 |||||||||||||||||||| Sbjct: 1465338 cgccgcgccgtcgccgacgc 1465319
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 ggacatctccgcccgcaagcgccg 135 ||||||||||||||||| |||||| Sbjct: 89866 ggacatctccgcccgcaggcgccg 89889
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 ccgcaagcgccgcgccgtcg 143 |||||||||||||||||||| Sbjct: 2639301 ccgcaagcgccgcgccgtcg 2639320
>emb|AL606995.3|OSJN00131 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085H11, complete sequence Length = 132394 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 ggccatggcttcccacgacg 65 |||||||||||||||||||| Sbjct: 94210 ggccatggcttcccacgacg 94229
>emb|BX649452.4| Zebrafish DNA sequence from clone DKEY-226L10 in linkage group 24, complete sequence Length = 192113 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 ttttcttgatgaggaagata 368 |||||||||||||||||||| Sbjct: 131794 ttttcttgatgaggaagata 131813
>gb|AC027449.6| Homo sapiens chromosome 18, clone RP11-535A5, complete sequence Length = 149660 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 caggaggtcagggatgagga 201 |||||||||||||||||||| Sbjct: 123896 caggaggtcagggatgagga 123915
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tggcttcccacgacgacgac 70 |||||||||||||||||||| Sbjct: 180429 tggcttcccacgacgacgac 180448
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 ccgcaagcgccgcgccgtcgccga 147 |||||||||||||| ||||||||| Sbjct: 2660792 ccgcaagcgccgcgacgtcgccga 2660815
>gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, complete sequence Length = 132268 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 gcgccgcgccgtcgccgacg 149 |||||||||||||||||||| Sbjct: 62486 gcgccgcgccgtcgccgacg 62467
>emb|CR388076.6| Mouse DNA sequence from clone RP23-155H18 on chromosome 4, complete sequence Length = 30096 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 caaggatatgggaggtaatg 389 |||||||||||||||||||| Sbjct: 26951 caaggatatgggaggtaatg 26970
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ccgcaagcgccgcgccgtcg 143 |||||||||||||||||||| Sbjct: 120917 ccgcaagcgccgcgccgtcg 120898
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 agtatgatacattcggtttt 427 |||||||||||||||||||| Sbjct: 490491 agtatgatacattcggtttt 490510
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 gcgccgcgccgtcgccgacg 149 |||||||||||||||||||| Sbjct: 2333486 gcgccgcgccgtcgccgacg 2333467
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cgccgcgccgtcgccgacgc 150 |||||||||||||||||||| Sbjct: 1181885 cgccgcgccgtcgccgacgc 1181904
>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0563F09 Length = 174905 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cgccgcgccgtcgccgacgc 150 |||||||||||||||||||| Sbjct: 12759 cgccgcgccgtcgccgacgc 12778
>dbj|AP005569.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1310_F05 Length = 107916 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cgccgcgccgtcgccgacgc 150 |||||||||||||||||||| Sbjct: 70479 cgccgcgccgtcgccgacgc 70498
>emb|CR848558.2| Xenopus tropicalis finished cDNA, clone TEgg062e02 Length = 2991 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 218 catggtgcatttactggaggcttctctgctgg 249 ||||| |||||||| ||||| ||||||||||| Sbjct: 526 catggagcatttacaggaggattctctgctgg 557
>gb|AC107689.7| Mus musculus chromosome 3, clone RP24-283F19, complete sequence Length = 168704 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 agcaaagcatatataatttt 352 |||||||||||||||||||| Sbjct: 49090 agcaaagcatatataatttt 49071
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agcgccgcgccgtcgccgac 148 |||||||||||||||||||| Sbjct: 3104168 agcgccgcgccgtcgccgac 3104149
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agcgccgcgccgtcgccgac 148 |||||||||||||||||||| Sbjct: 1419660 agcgccgcgccgtcgccgac 1419679
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 gcgccgcgccgtcgccgacg 149 |||||||||||||||||||| Sbjct: 2333437 gcgccgcgccgtcgccgacg 2333418
>emb|AL845157.7| Mouse DNA sequence from clone RP23-343I2 on chromosome 2, complete sequence Length = 193797 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 agagctgagcataaaaagcaaagc 340 ||||||||| |||||||||||||| Sbjct: 64665 agagctgagaataaaaagcaaagc 64642
>dbj|D26543.1|AMYP450VD Amycolata autotrophica P-450VD25 gene for vitamin D3 25-hydroxylase, complete cds Length = 1197 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 gcgggaggaggacatctccg 122 |||||||||||||||||||| Sbjct: 681 gcgggaggaggacatctccg 700 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,045,869 Number of Sequences: 3902068 Number of extensions: 5045869 Number of successful extensions: 106366 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105096 Number of HSP's gapped (non-prelim): 1270 length of query: 517 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 494 effective length of database: 17,143,297,704 effective search space: 8468789065776 effective search space used: 8468789065776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)