Clone Name | bastl29h11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK121641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055F21, full insert sequence Length = 2914 Score = 293 bits (148), Expect = 3e-76 Identities = 289/336 (86%) Strand = Plus / Plus Query: 115 cagggcgagccctcctcctccgccgatcccaaggccaagaaggactactcgacggcgatc 174 ||||| ||||||||||||||| ||||||| |||| |||||||| | ||||||||||||| Sbjct: 129 cagggagagccctcctcctcctccgatccgaaggggaagaaggatttctcgacggcgatc 188 Query: 175 ctcgagcggaagaagagccccaaccgcctcgtcgtcgacgaggccaccaatgacgacaac 234 |||||| |||||||| || ||||| || || ||||||||||||||||| || || ||| Sbjct: 189 ctcgagaggaagaagtcgccgaaccggctggtggtcgacgaggccaccaacgatgataac 248 Query: 235 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 294 |||||| ||| | ||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 249 tccgtcatcgggatgcaccccgacaccatggagaagctccagcttttccgcggcgacact 308 Query: 295 gtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacaca 354 || || ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 309 gtgctgctcaagggtaagaagagaaaagacaccatctgcattgttcttgctgatgacacc 368 Query: 355 tgtgatgagccgaaggtcagaatgaacaaaaccgtcaggaaaaacttgagagtgagactt 414 || || ||||||||| ||||||||||||| |||||||| ||| ||||||| ||||| Sbjct: 369 tgcgaggagccgaagatcagaatgaacaaggttgtcaggaagaacctgagagtacgactt 428 Query: 415 ggtgatgtggagtctgttcaccaatgccctgatgtc 450 |||||||| | ||||||||| |||||||| |||||| Sbjct: 429 ggtgatgtcgtgtctgttcatcaatgcccagatgtc 464
>dbj|AK099712.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082G14, full insert sequence Length = 2680 Score = 293 bits (148), Expect = 3e-76 Identities = 289/336 (86%) Strand = Plus / Plus Query: 115 cagggcgagccctcctcctccgccgatcccaaggccaagaaggactactcgacggcgatc 174 ||||| ||||||||||||||| ||||||| |||| |||||||| | ||||||||||||| Sbjct: 129 cagggagagccctcctcctcctccgatccgaaggggaagaaggatttctcgacggcgatc 188 Query: 175 ctcgagcggaagaagagccccaaccgcctcgtcgtcgacgaggccaccaatgacgacaac 234 |||||| |||||||| || ||||| || || ||||||||||||||||| || || ||| Sbjct: 189 ctcgagaggaagaagtcgccgaaccggctggtggtcgacgaggccaccaacgatgataac 248 Query: 235 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 294 |||||| ||| | ||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 249 tccgtcatcgggatgcaccccgacaccatggagaagctccagcttttccgcggcgacact 308 Query: 295 gtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacaca 354 || || ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 309 gtgctgctcaagggtaagaagagaaaagacaccatctgcattgttcttgctgatgacacc 368 Query: 355 tgtgatgagccgaaggtcagaatgaacaaaaccgtcaggaaaaacttgagagtgagactt 414 || || ||||||||| ||||||||||||| |||||||| ||| ||||||| ||||| Sbjct: 369 tgcgaggagccgaagatcagaatgaacaaggttgtcaggaagaacctgagagtacgactt 428 Query: 415 ggtgatgtggagtctgttcaccaatgccctgatgtc 450 |||||||| | ||||||||| |||||||| |||||| Sbjct: 429 ggtgatgtcgtgtctgttcatcaatgcccagatgtc 464
>dbj|AK099889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112O07, full insert sequence Length = 2685 Score = 293 bits (148), Expect = 3e-76 Identities = 289/336 (86%) Strand = Plus / Plus Query: 115 cagggcgagccctcctcctccgccgatcccaaggccaagaaggactactcgacggcgatc 174 ||||| ||||||||||||||| ||||||| |||| |||||||| | ||||||||||||| Sbjct: 129 cagggagagccctcctcctcctccgatccgaaggggaagaaggatttctcgacggcgatc 188 Query: 175 ctcgagcggaagaagagccccaaccgcctcgtcgtcgacgaggccaccaatgacgacaac 234 |||||| |||||||| || ||||| || || ||||||||||||||||| || || ||| Sbjct: 189 ctcgagaggaagaagtcgccgaaccggctggtggtcgacgaggccaccaacgatgataac 248 Query: 235 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 294 |||||| ||| | ||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 249 tccgtcatcgggatgcaccccgacaccatggagaagctccagcttttccgcggcgacact 308 Query: 295 gtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacaca 354 || || ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 309 gtgctgctcaagggtaagaagagaaaagacaccatctgcattgttcttgctgatgacacc 368 Query: 355 tgtgatgagccgaaggtcagaatgaacaaaaccgtcaggaaaaacttgagagtgagactt 414 || || ||||||||| ||||||||||||| |||||||| ||| ||||||| ||||| Sbjct: 369 tgcgaggagccgaagatcagaatgaacaaggttgtcaggaagaacctgagagtacgactt 428 Query: 415 ggtgatgtggagtctgttcaccaatgccctgatgtc 450 |||||||| | ||||||||| |||||||| |||||| Sbjct: 429 ggtgatgtcgtgtctgttcatcaatgcccagatgtc 464
>dbj|AK098980.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093N05, full insert sequence Length = 2701 Score = 293 bits (148), Expect = 3e-76 Identities = 289/336 (86%) Strand = Plus / Plus Query: 115 cagggcgagccctcctcctccgccgatcccaaggccaagaaggactactcgacggcgatc 174 ||||| ||||||||||||||| ||||||| |||| |||||||| | ||||||||||||| Sbjct: 129 cagggagagccctcctcctcctccgatccgaaggggaagaaggatttctcgacggcgatc 188 Query: 175 ctcgagcggaagaagagccccaaccgcctcgtcgtcgacgaggccaccaatgacgacaac 234 |||||| |||||||| || ||||| || || ||||||||||||||||| || || ||| Sbjct: 189 ctcgagaggaagaagtcgccgaaccggctggtggtcgacgaggccaccaacgatgataac 248 Query: 235 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 294 |||||| ||| | ||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 249 tccgtcatcgggatgcaccccgacaccatggagaagctccagcttttccgcggcgacact 308 Query: 295 gtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacaca 354 || || ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 309 gtgctgctcaagggtaagaagagaaaagacaccatctgcattgttcttgctgatgacacc 368 Query: 355 tgtgatgagccgaaggtcagaatgaacaaaaccgtcaggaaaaacttgagagtgagactt 414 || || ||||||||| ||||||||||||| |||||||| ||| ||||||| ||||| Sbjct: 369 tgcgaggagccgaagatcagaatgaacaaggttgtcaggaagaacctgagagtacgactt 428 Query: 415 ggtgatgtggagtctgttcaccaatgccctgatgtc 450 |||||||| | ||||||||| |||||||| |||||| Sbjct: 429 ggtgatgtcgtgtctgttcatcaatgcccagatgtc 464
>dbj|AK098874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D04, full insert sequence Length = 2685 Score = 293 bits (148), Expect = 3e-76 Identities = 289/336 (86%) Strand = Plus / Plus Query: 115 cagggcgagccctcctcctccgccgatcccaaggccaagaaggactactcgacggcgatc 174 ||||| ||||||||||||||| ||||||| |||| |||||||| | ||||||||||||| Sbjct: 129 cagggagagccctcctcctcctccgatccgaaggggaagaaggatttctcgacggcgatc 188 Query: 175 ctcgagcggaagaagagccccaaccgcctcgtcgtcgacgaggccaccaatgacgacaac 234 |||||| |||||||| || ||||| || || ||||||||||||||||| || || ||| Sbjct: 189 ctcgagaggaagaagtcgccgaaccggctggtggtcgacgaggccaccaacgatgataac 248 Query: 235 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 294 |||||| ||| | ||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 249 tccgtcatcgggatgcaccccgacaccatggagaagctccagcttttccgcggcgacact 308 Query: 295 gtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacaca 354 || || ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 309 gtgctgctcaagggtaagaagagaaaagacaccatctgcattgttcttgctgatgacacc 368 Query: 355 tgtgatgagccgaaggtcagaatgaacaaaaccgtcaggaaaaacttgagagtgagactt 414 || || ||||||||| ||||||||||||| |||||||| ||| ||||||| ||||| Sbjct: 369 tgcgaggagccgaagatcagaatgaacaaggttgtcaggaagaacctgagagtacgactt 428 Query: 415 ggtgatgtggagtctgttcaccaatgccctgatgtc 450 |||||||| | ||||||||| |||||||| |||||| Sbjct: 429 ggtgatgtcgtgtctgttcatcaatgcccagatgtc 464
>dbj|AK064955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A05, full insert sequence Length = 2685 Score = 293 bits (148), Expect = 3e-76 Identities = 289/336 (86%) Strand = Plus / Plus Query: 115 cagggcgagccctcctcctccgccgatcccaaggccaagaaggactactcgacggcgatc 174 ||||| ||||||||||||||| ||||||| |||| |||||||| | ||||||||||||| Sbjct: 129 cagggagagccctcctcctcctccgatccgaaggggaagaaggatttctcgacggcgatc 188 Query: 175 ctcgagcggaagaagagccccaaccgcctcgtcgtcgacgaggccaccaatgacgacaac 234 |||||| |||||||| || ||||| || || ||||||||||||||||| || || ||| Sbjct: 189 ctcgagaggaagaagtcgccgaaccggctggtggtcgacgaggccaccaacgatgataac 248 Query: 235 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 294 |||||| ||| | ||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 249 tccgtcatcgggatgcaccccgacaccatggagaagctccagcttttccgcggcgacact 308 Query: 295 gtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacaca 354 || || ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 309 gtgctgctcaagggtaagaagagaaaagacaccatctgcattgttcttgctgatgacacc 368 Query: 355 tgtgatgagccgaaggtcagaatgaacaaaaccgtcaggaaaaacttgagagtgagactt 414 || || ||||||||| ||||||||||||| |||||||| ||| ||||||| ||||| Sbjct: 369 tgcgaggagccgaagatcagaatgaacaaggttgtcaggaagaacctgagagtacgactt 428 Query: 415 ggtgatgtggagtctgttcaccaatgccctgatgtc 450 |||||||| | ||||||||| |||||||| |||||| Sbjct: 429 ggtgatgtcgtgtctgttcatcaatgcccagatgtc 464
>ref|NM_196705.1| Oryza sativa (japonica cultivar-group) putative endoplasmic reticulum membrane fusion protein (OSJNBa0046P18.14), mRNA Length = 2454 Score = 262 bits (132), Expect = 9e-67 Identities = 264/308 (85%) Strand = Plus / Plus Query: 115 cagggcgagccctcctcctccgccgatcccaaggccaagaaggactactcgacggcgatc 174 ||||| |||||||| || || |||||||| |||| |||||||||||||||||||||||| Sbjct: 10 cagggggagccctcgtcgtcggccgatccgaaggggaagaaggactactcgacggcgatc 69 Query: 175 ctcgagcggaagaagagccccaaccgcctcgtcgtcgacgaggccaccaatgacgacaac 234 || ||| |||||||| || ||||| || || || |||||||||||||||||||||||| Sbjct: 70 ctggagaggaagaagtcgccgaaccggctggtggtggacgaggccaccaatgacgacaac 129 Query: 235 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 294 ||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 130 tccgtcgtcgcgctgcacccggacaccatggagaggctgcagctcttccgcggcgacacc 189 Query: 295 gtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacaca 354 |||||||||||||| || ||||||||||| || || |||||||| ||||| || || || Sbjct: 190 gtcctcctcaagggcaagaagaggaaagatactatttgcattgtccttgcggacgaaacc 249 Query: 355 tgtgatgagccgaaggtcagaatgaacaaaaccgtcaggaaaaacttgagagtgagactt 414 ||||| ||||| ||| | || |||||||| |||||||| ||| |||| ||| ||||| Sbjct: 250 tgtgaggagcccaagattaggatgaacaaggttgtcaggaagaacctgagggtgcgactt 309 Query: 415 ggtgatgt 422 |||||||| Sbjct: 310 ggtgatgt 317
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 200 bits (101), Expect = 3e-48 Identities = 143/157 (91%) Strand = Plus / Plus Query: 151 aagaaggactactcgacggcgatcctcgagcggaagaagagccccaaccgcctcgtcgtc 210 |||||||||||||||||||||||||| ||| |||||||| || ||||| || || || Sbjct: 15397526 aagaaggactactcgacggcgatcctggagaggaagaagtcgccgaaccggctggtggtg 15397585 Query: 211 gacgaggccaccaatgacgacaactccgtcgtcgccctccaccccgacaccatggagagg 270 ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| Sbjct: 15397586 gacgaggccaccaatgacgacaactccgtcgtcgcgctgcacccggacaccatggagagg 15397645 Query: 271 ctccagctcttccgcggcgacaccgtcctcctcaagg 307 || |||||||||||||||||||||||||||||||||| Sbjct: 15397646 ctgcagctcttccgcggcgacaccgtcctcctcaagg 15397682 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 313 aagaggaaagacacaatctgcattgttcttgctgatgacacatgtgatgagccgaaggtc 372 ||||||||||| || || |||||||| ||||| || || || ||||| ||||| ||| | Sbjct: 15398425 aagaggaaagatactatttgcattgtccttgcggacgaaacctgtgaggagcccaagatt 15398484 Query: 373 agaatgaacaaaaccgtcaggaaaaacttgagagtgagacttggtgatgt 422 || |||||||| |||||||| ||| |||| ||| ||||||||||||| Sbjct: 15398485 aggatgaacaaggttgtcaggaagaacctgagggtgcgacttggtgatgt 15398534
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18, complete sequence Length = 144720 Score = 200 bits (101), Expect = 3e-48 Identities = 143/157 (91%) Strand = Plus / Plus Query: 151 aagaaggactactcgacggcgatcctcgagcggaagaagagccccaaccgcctcgtcgtc 210 |||||||||||||||||||||||||| ||| |||||||| || ||||| || || || Sbjct: 114889 aagaaggactactcgacggcgatcctggagaggaagaagtcgccgaaccggctggtggtg 114948 Query: 211 gacgaggccaccaatgacgacaactccgtcgtcgccctccaccccgacaccatggagagg 270 ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| Sbjct: 114949 gacgaggccaccaatgacgacaactccgtcgtcgcgctgcacccggacaccatggagagg 115008 Query: 271 ctccagctcttccgcggcgacaccgtcctcctcaagg 307 || |||||||||||||||||||||||||||||||||| Sbjct: 115009 ctgcagctcttccgcggcgacaccgtcctcctcaagg 115045 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 313 aagaggaaagacacaatctgcattgttcttgctgatgacacatgtgatgagccgaaggtc 372 ||||||||||| || || |||||||| ||||| || || || ||||| ||||| ||| | Sbjct: 115788 aagaggaaagatactatttgcattgtccttgcggacgaaacctgtgaggagcccaagatt 115847 Query: 373 agaatgaacaaaaccgtcaggaaaaacttgagagtgagacttggtgatgt 422 || |||||||| |||||||| ||| |||| ||| ||||||||||||| Sbjct: 115848 aggatgaacaaggttgtcaggaagaacctgagggtgcgacttggtgatgt 115897
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 200 bits (101), Expect = 3e-48 Identities = 143/157 (91%) Strand = Plus / Plus Query: 151 aagaaggactactcgacggcgatcctcgagcggaagaagagccccaaccgcctcgtcgtc 210 |||||||||||||||||||||||||| ||| |||||||| || ||||| || || || Sbjct: 15405767 aagaaggactactcgacggcgatcctggagaggaagaagtcgccgaaccggctggtggtg 15405826 Query: 211 gacgaggccaccaatgacgacaactccgtcgtcgccctccaccccgacaccatggagagg 270 ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| Sbjct: 15405827 gacgaggccaccaatgacgacaactccgtcgtcgcgctgcacccggacaccatggagagg 15405886 Query: 271 ctccagctcttccgcggcgacaccgtcctcctcaagg 307 || |||||||||||||||||||||||||||||||||| Sbjct: 15405887 ctgcagctcttccgcggcgacaccgtcctcctcaagg 15405923 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 313 aagaggaaagacacaatctgcattgttcttgctgatgacacatgtgatgagccgaaggtc 372 ||||||||||| || || |||||||| ||||| || || || ||||| ||||| ||| | Sbjct: 15406666 aagaggaaagatactatttgcattgtccttgcggacgaaacctgtgaggagcccaagatt 15406725 Query: 373 agaatgaacaaaaccgtcaggaaaaacttgagagtgagacttggtgatgt 422 || |||||||| |||||||| ||| |||| ||| ||||||||||||| Sbjct: 15406726 aggatgaacaaggttgtcaggaagaacctgagggtgcgacttggtgatgt 15406775
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 139 bits (70), Expect = 9e-30 Identities = 127/146 (86%) Strand = Plus / Minus Query: 305 agggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacacatgtgatgagc 364 ||||||| ||||| |||||||| |||||||||||||||||||||||||| || || |||| Sbjct: 2837325 agggtaagaagagaaaagacaccatctgcattgttcttgctgatgacacctgcgaggagc 2837266 Query: 365 cgaaggtcagaatgaacaaaaccgtcaggaaaaacttgagagtgagacttggtgatgtgg 424 ||||| ||||||||||||| |||||||| ||| ||||||| ||||||||||||| | Sbjct: 2837265 cgaagatcagaatgaacaaggttgtcaggaagaacctgagagtacgacttggtgatgtcg 2837206 Query: 425 agtctgttcaccaatgccctgatgtc 450 ||||||||| |||||||| |||||| Sbjct: 2837205 tgtctgttcatcaatgcccagatgtc 2837180 Score = 129 bits (65), Expect = 8e-27 Identities = 134/157 (85%) Strand = Plus / Minus Query: 151 aagaaggactactcgacggcgatcctcgagcggaagaagagccccaaccgcctcgtcgtc 210 |||||||| | ||||||||||||||||||| |||||||| || ||||| || || ||| Sbjct: 2838071 aagaaggatttctcgacggcgatcctcgagaggaagaagtcgccgaaccggctggtggtc 2838012 Query: 211 gacgaggccaccaatgacgacaactccgtcgtcgccctccaccccgacaccatggagagg 270 |||||||||||||| || || ||||||||| ||| | ||||||||||||||||||| | Sbjct: 2838011 gacgaggccaccaacgatgataactccgtcatcgggatgcaccccgacaccatggagaag 2837952 Query: 271 ctccagctcttccgcggcgacaccgtcctcctcaagg 307 |||||||| |||||||||||||| || || ||||||| Sbjct: 2837951 ctccagcttttccgcggcgacactgtgctgctcaagg 2837915 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 115 cagggcgagccctcctcctccgccgatcc 143 ||||| ||||||||||||||| ||||||| Sbjct: 2838230 cagggagagccctcctcctcctccgatcc 2838202
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 139 bits (70), Expect = 9e-30 Identities = 127/146 (86%) Strand = Plus / Minus Query: 305 agggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacacatgtgatgagc 364 ||||||| ||||| |||||||| |||||||||||||||||||||||||| || || |||| Sbjct: 2837436 agggtaagaagagaaaagacaccatctgcattgttcttgctgatgacacctgcgaggagc 2837377 Query: 365 cgaaggtcagaatgaacaaaaccgtcaggaaaaacttgagagtgagacttggtgatgtgg 424 ||||| ||||||||||||| |||||||| ||| ||||||| ||||||||||||| | Sbjct: 2837376 cgaagatcagaatgaacaaggttgtcaggaagaacctgagagtacgacttggtgatgtcg 2837317 Query: 425 agtctgttcaccaatgccctgatgtc 450 ||||||||| |||||||| |||||| Sbjct: 2837316 tgtctgttcatcaatgcccagatgtc 2837291 Score = 129 bits (65), Expect = 8e-27 Identities = 134/157 (85%) Strand = Plus / Minus Query: 151 aagaaggactactcgacggcgatcctcgagcggaagaagagccccaaccgcctcgtcgtc 210 |||||||| | ||||||||||||||||||| |||||||| || ||||| || || ||| Sbjct: 2838182 aagaaggatttctcgacggcgatcctcgagaggaagaagtcgccgaaccggctggtggtc 2838123 Query: 211 gacgaggccaccaatgacgacaactccgtcgtcgccctccaccccgacaccatggagagg 270 |||||||||||||| || || ||||||||| ||| | ||||||||||||||||||| | Sbjct: 2838122 gacgaggccaccaacgatgataactccgtcatcgggatgcaccccgacaccatggagaag 2838063 Query: 271 ctccagctcttccgcggcgacaccgtcctcctcaagg 307 |||||||| |||||||||||||| || || ||||||| Sbjct: 2838062 ctccagcttttccgcggcgacactgtgctgctcaagg 2838026 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 115 cagggcgagccctcctcctccgccgatcc 143 ||||| ||||||||||||||| ||||||| Sbjct: 2838341 cagggagagccctcctcctcctccgatcc 2838313
>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence Length = 165395 Score = 139 bits (70), Expect = 9e-30 Identities = 127/146 (86%) Strand = Plus / Minus Query: 305 agggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacacatgtgatgagc 364 ||||||| ||||| |||||||| |||||||||||||||||||||||||| || || |||| Sbjct: 109281 agggtaagaagagaaaagacaccatctgcattgttcttgctgatgacacctgcgaggagc 109222 Query: 365 cgaaggtcagaatgaacaaaaccgtcaggaaaaacttgagagtgagacttggtgatgtgg 424 ||||| ||||||||||||| |||||||| ||| ||||||| ||||||||||||| | Sbjct: 109221 cgaagatcagaatgaacaaggttgtcaggaagaacctgagagtacgacttggtgatgtcg 109162 Query: 425 agtctgttcaccaatgccctgatgtc 450 ||||||||| |||||||| |||||| Sbjct: 109161 tgtctgttcatcaatgcccagatgtc 109136 Score = 129 bits (65), Expect = 8e-27 Identities = 134/157 (85%) Strand = Plus / Minus Query: 151 aagaaggactactcgacggcgatcctcgagcggaagaagagccccaaccgcctcgtcgtc 210 |||||||| | ||||||||||||||||||| |||||||| || ||||| || || ||| Sbjct: 110027 aagaaggatttctcgacggcgatcctcgagaggaagaagtcgccgaaccggctggtggtc 109968 Query: 211 gacgaggccaccaatgacgacaactccgtcgtcgccctccaccccgacaccatggagagg 270 |||||||||||||| || || ||||||||| ||| | ||||||||||||||||||| | Sbjct: 109967 gacgaggccaccaacgatgataactccgtcatcgggatgcaccccgacaccatggagaag 109908 Query: 271 ctccagctcttccgcggcgacaccgtcctcctcaagg 307 |||||||| |||||||||||||| || || ||||||| Sbjct: 109907 ctccagcttttccgcggcgacactgtgctgctcaagg 109871 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 115 cagggcgagccctcctcctccgccgatcc 143 ||||| ||||||||||||||| ||||||| Sbjct: 110186 cagggagagccctcctcctcctccgatcc 110158
>ref|NM_111819.3| Arabidopsis thaliana CDC48 (CELL DIVISION CYCLE 48); ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding AT3G09840 (CDC48) mRNA, complete cds Length = 2797 Score = 131 bits (66), Expect = 2e-27 Identities = 171/206 (83%) Strand = Plus / Plus Query: 175 ctcgagcggaagaagagccccaaccgcctcgtcgtcgacgaggccaccaatgacgacaac 234 |||||| |||||||| || ||||| ||||||||||| ||||| | ||| || || ||| Sbjct: 215 ctcgagaggaagaagtctccgaaccgtctcgtcgtcgatgaggctatcaacgatgataac 274 Query: 235 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 294 ||||||||| | || ||||| | |||||||||| ||| ||||||||||| || || ||| Sbjct: 275 tccgtcgtctctcttcaccctgcaaccatggagaagcttcagctcttccgtggtgatacc 334 Query: 295 gtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacaca 354 | ||| |||||||||| |||||||| ||||| ||||||||| |||||||||||| ||| Sbjct: 335 attctcatcaagggtaagaagaggaaggacactgtctgcattgctcttgctgatgagaca 394 Query: 355 tgtgatgagccgaaggtcagaatgaa 380 ||||| ||||| ||| |||||||||| Sbjct: 395 tgtgaggagccaaagatcagaatgaa 420
>gb|AF083704.1| Arabidopsis thaliana clone sps248 unknown mRNA Length = 484 Score = 131 bits (66), Expect = 2e-27 Identities = 171/206 (83%) Strand = Plus / Plus Query: 175 ctcgagcggaagaagagccccaaccgcctcgtcgtcgacgaggccaccaatgacgacaac 234 |||||| |||||||| || ||||| ||||||||||| ||||| | ||| || || ||| Sbjct: 215 ctcgagaggaagaagtctccgaaccgtctcgtcgtcgatgaggctatcaacgatgataac 274 Query: 235 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 294 ||||||||| | || ||||| | |||||||||| ||| ||||||||||| || || ||| Sbjct: 275 tccgtcgtctctcttcaccctgcaaccatggagaagcttcagctcttccgtggtgatacc 334 Query: 295 gtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacaca 354 | ||| |||||||||| |||||||| ||||| ||||||||| |||||||||||| ||| Sbjct: 335 attctcatcaagggtaagaagaggaaggacactgtctgcattgctcttgctgatgagaca 394 Query: 355 tgtgatgagccgaaggtcagaatgaa 380 ||||| ||||| ||| |||||||||| Sbjct: 395 tgtgaggagccaaagatcagaatgaa 420
>gb|AY094434.1| Arabidopsis thaliana AT3g09840/F8A24_11 mRNA, complete cds Length = 2628 Score = 131 bits (66), Expect = 2e-27 Identities = 171/206 (83%) Strand = Plus / Plus Query: 175 ctcgagcggaagaagagccccaaccgcctcgtcgtcgacgaggccaccaatgacgacaac 234 |||||| |||||||| || ||||| ||||||||||| ||||| | ||| || || ||| Sbjct: 171 ctcgagaggaagaagtctccgaaccgtctcgtcgtcgatgaggctatcaacgatgataac 230 Query: 235 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 294 ||||||||| | || ||||| | |||||||||| ||| ||||||||||| || || ||| Sbjct: 231 tccgtcgtctctcttcaccctgcaaccatggagaagcttcagctcttccgtggtgatacc 290 Query: 295 gtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacaca 354 | ||| |||||||||| |||||||| ||||| ||||||||| |||||||||||| ||| Sbjct: 291 attctcatcaagggtaagaagaggaaggacactgtctgcattgctcttgctgatgagaca 350 Query: 355 tgtgatgagccgaaggtcagaatgaa 380 ||||| ||||| ||| |||||||||| Sbjct: 351 tgtgaggagccaaagatcagaatgaa 376
>gb|AY065076.1| Arabidopsis thaliana putative transitional endoplasmic reticulum ATPase (F8A24.11) mRNA, complete cds Length = 2730 Score = 131 bits (66), Expect = 2e-27 Identities = 171/206 (83%) Strand = Plus / Plus Query: 175 ctcgagcggaagaagagccccaaccgcctcgtcgtcgacgaggccaccaatgacgacaac 234 |||||| |||||||| || ||||| ||||||||||| ||||| | ||| || || ||| Sbjct: 205 ctcgagaggaagaagtctccgaaccgtctcgtcgtcgatgaggctatcaacgatgataac 264 Query: 235 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 294 ||||||||| | || ||||| | |||||||||| ||| ||||||||||| || || ||| Sbjct: 265 tccgtcgtctctcttcaccctgcaaccatggagaagcttcagctcttccgtggtgatacc 324 Query: 295 gtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacaca 354 | ||| |||||||||| |||||||| ||||| ||||||||| |||||||||||| ||| Sbjct: 325 attctcatcaagggtaagaagaggaaggacactgtctgcattgctcttgctgatgagaca 384 Query: 355 tgtgatgagccgaaggtcagaatgaa 380 ||||| ||||| ||| |||||||||| Sbjct: 385 tgtgaggagccaaagatcagaatgaa 410
>gb|U37587.1|ATU37587 Arabidopsis thaliana cell division cycle protein (CDC48) mRNA, complete cds Length = 2638 Score = 131 bits (66), Expect = 2e-27 Identities = 171/206 (83%) Strand = Plus / Plus Query: 175 ctcgagcggaagaagagccccaaccgcctcgtcgtcgacgaggccaccaatgacgacaac 234 |||||| |||||||| || ||||| ||||||||||| ||||| | ||| || || ||| Sbjct: 154 ctcgagaggaagaagtctccgaaccgtctcgtcgtcgatgaggctatcaacgatgataac 213 Query: 235 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 294 ||||||||| | || ||||| | |||||||||| ||| ||||||||||| || || ||| Sbjct: 214 tccgtcgtctctcttcaccctgcaaccatggagaagcttcagctcttccgtggtgatacc 273 Query: 295 gtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacaca 354 | ||| |||||||||| |||||||| ||||| ||||||||| |||||||||||| ||| Sbjct: 274 attctcatcaagggtaagaagaggaaggacactgtctgcattgctcttgctgatgagaca 333 Query: 355 tgtgatgagccgaaggtcagaatgaa 380 ||||| ||||| ||| |||||||||| Sbjct: 334 tgtgaggagccaaagatcagaatgaa 359
>gb|AC015985.10|ATAC015985 Arabidopsis thaliana chromosome III BAC F8A24 genomic sequence, complete sequence Length = 72902 Score = 79.8 bits (40), Expect = 7e-12 Identities = 67/76 (88%) Strand = Plus / Minus Query: 305 agggtaaaaagaggaaagacacaatctgcattgttcttgctgatgacacatgtgatgagc 364 ||||||| |||||||| ||||| ||||||||| |||||||||||| |||||||| |||| Sbjct: 46600 agggtaagaagaggaaggacactgtctgcattgctcttgctgatgagacatgtgaggagc 46541 Query: 365 cgaaggtcagaatgaa 380 | ||| |||||||||| Sbjct: 46540 caaagatcagaatgaa 46525 Score = 60.0 bits (30), Expect = 7e-06 Identities = 90/110 (81%) Strand = Plus / Minus Query: 175 ctcgagcggaagaagagccccaaccgcctcgtcgtcgacgaggccaccaatgacgacaac 234 |||||| |||||||| || ||||| ||||||||||| ||||| | ||| || || ||| Sbjct: 47019 ctcgagaggaagaagtctccgaaccgtctcgtcgtcgatgaggctatcaacgatgataac 46960 Query: 235 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccg 284 ||||||||| | || ||||| | |||||||||| ||| ||||||||||| Sbjct: 46959 tccgtcgtctctcttcaccctgcaaccatggagaagcttcagctcttccg 46910
>gb|DQ359725.1| Glycine max plamsma membrane-associated AAA-ATPase mRNA, complete cds Length = 2628 Score = 61.9 bits (31), Expect = 2e-06 Identities = 124/155 (80%) Strand = Plus / Plus Query: 226 gacgacaactccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgc 285 |||||||||||||| ||| || | || ||| | |||||||| | ||| ||||| ||||| Sbjct: 163 gacgacaactccgtggtcaccatgcatccccaaaccatggaaaagcttcagcttttccga 222 Query: 286 ggcgacaccgtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgct 345 || ||||| ||||| |||||||||| || |||| || || || ||||| | ||||||| Sbjct: 223 ggggacactatcctcatcaagggtaagaaacggaaggataccatttgcatagctcttgct 282 Query: 346 gatgacacatgtgatgagccgaaggtcagaatgaa 380 ||||| | ||||| ||||||||| |||| ||||| Sbjct: 283 gatgagaactgtgaggagccgaagatcaggatgaa 317
>gb|U20213.1|GMU20213 Glycine max valosin-containing protein mRNA, complete cds Length = 2654 Score = 61.9 bits (31), Expect = 2e-06 Identities = 124/155 (80%) Strand = Plus / Plus Query: 226 gacgacaactccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgc 285 |||||||||||||| ||| || | || ||| | |||||||| | ||| ||||| ||||| Sbjct: 183 gacgacaactccgtggtcaccatgcatccccaaaccatggaaaagcttcagcttttccga 242 Query: 286 ggcgacaccgtcctcctcaagggtaaaaagaggaaagacacaatctgcattgttcttgct 345 || ||||| ||||| |||||||||| || |||| || || || ||||| | ||||||| Sbjct: 243 ggggacactatcctcatcaagggtaagaaacggaaggataccatttgcatagctcttgct 302 Query: 346 gatgacacatgtgatgagccgaaggtcagaatgaa 380 ||||| | ||||| ||||||||| |||| ||||| Sbjct: 303 gatgagaactgtgaggagccgaagatcaggatgaa 337
>gb|BT012783.1| Lycopersicon esculentum clone 113773R, mRNA sequence Length = 2684 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 333 cattgttcttgctgatgacacatgtgatgagccgaaggtcagaatgaacaa 383 ||||| |||||||||||| |||||||||||||| ||| | || |||||||| Sbjct: 268 cattgctcttgctgatgaaacatgtgatgagccaaagattaggatgaacaa 318
>ref|XM_961599.1| PREDICTED: Tribolium castaneum similar to CG2331-PA, isoform A, transcript variant 1 (LOC661187), mRNA Length = 2619 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 214 gaggccaccaatgacgacaactccgtcgt 242 ||||||||||| ||||||||||||||||| Sbjct: 188 gaggccaccaacgacgacaactccgtcgt 216
>ref|XM_970790.1| PREDICTED: Tribolium castaneum similar to CG2331-PA, isoform A, transcript variant 3 (LOC661187), mRNA Length = 2637 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 214 gaggccaccaatgacgacaactccgtcgt 242 ||||||||||| ||||||||||||||||| Sbjct: 188 gaggccaccaacgacgacaactccgtcgt 216
>gb|BT014585.1| Lycopersicon esculentum clone 134043F, mRNA sequence Length = 2708 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Plus Query: 340 cttgctgatgacacatgtgatgagccgaaggtcagaatgaacaa 383 ||||||||||| |||||||||||||| ||| | || |||||||| Sbjct: 300 cttgctgatgaaacatgtgatgagccaaagattaggatgaacaa 343
>emb|Y09396.1|CACAFP C.annuum mRNA for CDC48p-like protein Length = 2682 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Plus Query: 340 cttgctgatgacacatgtgatgagccgaaggtcagaatgaacaa 383 ||||||||||| |||||||||||||| ||| | || |||||||| Sbjct: 265 cttgctgatgaaacatgtgatgagccaaagattaggatgaacaa 308
>ref|XM_385706.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05530.1) partial mRNA Length = 2466 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 270 gctccagctcttccgcggcgacaccgtcctc 300 ||||||||||||||| || |||||||||||| Sbjct: 198 gctccagctcttccgtggtgacaccgtcctc 228
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 20 gacccggagagagagacgcaggc 42 ||||||||||||||||||||||| Sbjct: 896555 gacccggagagagagacgcaggc 896577
>ref|XM_480565.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1312 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 ggcgagccctcctcctccgccg 139 |||||||||||||||||||||| Sbjct: 439 ggcgagccctcctcctccgccg 460
>gb|AC091453.2| Mus musculus chromosome X clones RP21-19N11, RP21-667A15, RP21-395M8 complete sequence Length = 350000 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 393 gaaaaacttgagagtgagactt 414 |||||||||||||||||||||| Sbjct: 301069 gaaaaacttgagagtgagactt 301090
>emb|AL354893.14| Human DNA sequence from clone RP11-80I15 on chromosome 9 Contains an RPS26 (ribosomal protein S26) pseudogene, the 3' end of the FANCC gene for Fanconi anemia complementation group C, the 3' end of gene FLJ14675, a novel gene and a CpG island, complete sequence Length = 103980 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 260 ccatggagaggctccagctctt 281 |||||||||||||||||||||| Sbjct: 29014 ccatggagaggctccagctctt 28993
>gb|BC029000.1| Mus musculus solute carrier family 6 (neurotransmitter transporter, creatine), member 8, mRNA (cDNA clone IMAGE:5357112), partial cds Length = 2740 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 393 gaaaaacttgagagtgagactt 414 |||||||||||||||||||||| Sbjct: 2056 gaaaaacttgagagtgagactt 2077
>ref|NM_133987.1| Mus musculus solute carrier family 6 (neurotransmitter transporter, creatine), member 8 (Slc6a8), mRNA Length = 3982 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 393 gaaaaacttgagagtgagactt 414 |||||||||||||||||||||| Sbjct: 3295 gaaaaacttgagagtgagactt 3316
>gb|AF459436.1|AF459436 Mus musculus sodium and chloride dependent creatine transporter gene, complete cds Length = 32008 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 393 gaaaaacttgagagtgagactt 414 |||||||||||||||||||||| Sbjct: 20967 gaaaaacttgagagtgagactt 20988
>gb|AF459435.1|AF459435 Mus musculus sodium and chloride dependent creatine transporter mRNA, complete cds Length = 3982 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 393 gaaaaacttgagagtgagactt 414 |||||||||||||||||||||| Sbjct: 3295 gaaaaacttgagagtgagactt 3316
>gb|BC024564.1| Mus musculus solute carrier family 6 (neurotransmitter transporter, creatine), member 8, mRNA (cDNA clone IMAGE:5011300), with apparent retained intron Length = 1786 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 393 gaaaaacttgagagtgagactt 414 |||||||||||||||||||||| Sbjct: 1102 gaaaaacttgagagtgagactt 1123
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 118 ggcgagccctcctcctccgccg 139 |||||||||||||||||||||| Sbjct: 5842842 ggcgagccctcctcctccgccg 5842821
>gb|AY220878.1| Homo sapiens Fanconi anemia, complementation group C (FANCC) gene, complete cds Length = 221989 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 260 ccatggagaggctccagctctt 281 |||||||||||||||||||||| Sbjct: 175366 ccatggagaggctccagctctt 175345
>dbj|AP005442.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073I05 Length = 182291 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 118 ggcgagccctcctcctccgccg 139 |||||||||||||||||||||| Sbjct: 29952 ggcgagccctcctcctccgccg 29931
>dbj|BS000091.2| Pan troglodytes chromosome 22 clone:RP43-001O17, map 22, complete sequences Length = 36755 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 304 aagggtaaaaagaggaaagaca 325 |||||||||||||||||||||| Sbjct: 31316 aagggtaaaaagaggaaagaca 31295
>dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0556A11 Length = 138096 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 118 ggcgagccctcctcctccgccg 139 |||||||||||||||||||||| Sbjct: 96987 ggcgagccctcctcctccgccg 96966
>dbj|AK120197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036M14, full insert sequence Length = 1313 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 ggcgagccctcctcctccgccg 139 |||||||||||||||||||||| Sbjct: 440 ggcgagccctcctcctccgccg 461
>dbj|AB077327.1| Mus musculus CRT mRNA for creatine transporter, complete cds Length = 3334 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 393 gaaaaacttgagagtgagactt 414 |||||||||||||||||||||| Sbjct: 2640 gaaaaacttgagagtgagactt 2661
>emb|AL805924.5| Mouse DNA sequence from clone RP23-329M9 on chromosome X, complete sequence Length = 222134 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 393 gaaaaacttgagagtgagactt 414 |||||||||||||||||||||| Sbjct: 168721 gaaaaacttgagagtgagactt 168742
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 accgcctcgtcgtcgacgagg 217 ||||||||||||||||||||| Sbjct: 3365866 accgcctcgtcgtcgacgagg 3365886
>gb|AC096338.17| Rattus norvegicus X BAC CH230-95I19 (Children's Hospital Oakland Research Institute) complete sequence Length = 236662 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 aaaaacttgagagtgagactt 414 ||||||||||||||||||||| Sbjct: 173868 aaaaacttgagagtgagactt 173848
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 accgcctcgtcgtcgacgagg 217 ||||||||||||||||||||| Sbjct: 404893 accgcctcgtcgtcgacgagg 404913
>emb|X66494.1|RNCHOT1 R.norvegicus CHOT1 mRNA Length = 3972 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 aaaaacttgagagtgagactt 414 ||||||||||||||||||||| Sbjct: 3292 aaaaacttgagagtgagactt 3312
>emb|Z78063.1|CEF45D3 Caenorhabditis elegans Cosmid F45D3, complete sequence Length = 37434 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 378 gaacaaaaccgtcaggaaaaa 398 ||||||||||||||||||||| Sbjct: 23712 gaacaaaaccgtcaggaaaaa 23692
>ref|XM_761365.1| Theileria parva strain Muguga chromosome 1 cell division cycle protein 48 (TP01_0937) partial mRNA Length = 2462 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 caatgacgacaactccgtcgt 242 ||||||||||||||||||||| Sbjct: 141 caatgacgacaactccgtcgt 161
>ref|NM_017348.1| Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, creatine), member 8 (Slc6a8), mRNA Length = 3972 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 aaaaacttgagagtgagactt 414 ||||||||||||||||||||| Sbjct: 3292 aaaaacttgagagtgagactt 3312
>gb|AC177794.2| Mus musculus chromosome 1, clone wi1-176I16, complete sequence Length = 40705 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 299 tcctcaagggtaaaaagaggaaaga 323 |||||| |||||||||||||||||| Sbjct: 23909 tcctcatgggtaaaaagaggaaaga 23933
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 accgcctcgtcgtcgacgagg 217 ||||||||||||||||||||| Sbjct: 214614 accgcctcgtcgtcgacgagg 214634
>ref|XM_579415.1| PREDICTED: Rattus norvegicus choline transporter (Slc6a8), mRNA Length = 3508 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 aaaaacttgagagtgagactt 414 ||||||||||||||||||||| Sbjct: 2841 aaaaacttgagagtgagactt 2861
>gb|AC140241.3| Mus musculus BAC clone RP23-283I15 from chromosome 17, complete sequence Length = 158575 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 gtcctcctcaagggtaaaaag 315 ||||||||||||||||||||| Sbjct: 20805 gtcctcctcaagggtaaaaag 20825
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 accgcctcgtcgtcgacgagg 217 ||||||||||||||||||||| Sbjct: 199031 accgcctcgtcgtcgacgagg 199051
>gb|AC163715.5| Mus musculus BAC clone RP23-367H6 from chromosome 17, complete sequence Length = 208781 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 gtcctcctcaagggtaaaaag 315 ||||||||||||||||||||| Sbjct: 50335 gtcctcctcaagggtaaaaag 50355
>ref|NM_120412.2| Arabidopsis thaliana ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding AT5G03340 mRNA, complete cds Length = 2671 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 427 tctgttcaccaatgccctgatgtc 450 ||||||||||||||||| |||||| Sbjct: 408 tctgttcaccaatgcccagatgtc 431
>gb|AC135927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B02, complete sequence Length = 146435 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 cgagccctcctcctccgccg 139 |||||||||||||||||||| Sbjct: 47948 cgagccctcctcctccgccg 47967
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 cgacggcgatcctcgagcgg 183 |||||||||||||||||||| Sbjct: 290234 cgacggcgatcctcgagcgg 290253
>gb|AC135928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0686B10, complete sequence Length = 159672 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 cgagccctcctcctccgccg 139 |||||||||||||||||||| Sbjct: 99207 cgagccctcctcctccgccg 99226
>ref|XM_322103.1| Neurospora crassa OR74A hypothetical protein (NCU00018.1) partial mRNA Length = 2475 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 257 acaccatggagaggctccagctcttccg 284 ||||||||||| ||||||||||||||| Sbjct: 191 acaccatggagcagctccagctcttccg 218
>ref|XM_951912.1| Neurospora crassa OR74A hypothetical protein (NCU00018.1) partial mRNA Length = 2475 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 257 acaccatggagaggctccagctcttccg 284 ||||||||||| ||||||||||||||| Sbjct: 191 acaccatggagcagctccagctcttccg 218
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 371 tcagaatgaacaaaaccgtcagga 394 ||||||||||||| |||||||||| Sbjct: 6217400 tcagaatgaacaagaccgtcagga 6217377 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 371 tcagaatgaacaaaaccgtcagga 394 ||||||||||||| |||||||||| Sbjct: 2149010 tcagaatgaacaagaccgtcagga 2148987 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 371 tcagaatgaacaaaaccgtcagga 394 ||||||||||||| |||||||||| Sbjct: 1643695 tcagaatgaacaagaccgtcagga 1643718
>gb|CP000121.1| Anabaena variabilis ATCC 29413 plasmid C, complete sequence Length = 300758 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 371 tcagaatgaacaaaaccgtcagga 394 ||||||||||||| |||||||||| Sbjct: 226734 tcagaatgaacaagaccgtcagga 226711
>gb|CP000119.1| Anabaena variabilis ATCC 29413 plasmid A, complete sequence Length = 366354 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 371 tcagaatgaacaaaaccgtcagga 394 ||||||||||||| |||||||||| Sbjct: 78044 tcagaatgaacaagaccgtcagga 78021
>gb|AF499724.1| Thellungiella halophila aluminum-induced protein-like protein mRNA, complete cds Length = 1129 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ttgttcttgctgatgacaca 354 |||||||||||||||||||| Sbjct: 577 ttgttcttgctgatgacaca 596
>gb|AC134328.2| Mus musculus BAC clone RP24-299H18 from chromosome 12, complete sequence Length = 189420 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 agtctgttcaccaatgccct 444 |||||||||||||||||||| Sbjct: 110072 agtctgttcaccaatgccct 110091
>ref|XM_838077.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0993) partial mRNA Length = 7521 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 cgacggcgatcctcgagcgg 183 |||||||||||||||||||| Sbjct: 1965 cgacggcgatcctcgagcgg 1984
>ref|XM_384626.1| Gibberella zeae PH-1 chromosome 2 predicted protein (FG04450.1) partial mRNA Length = 723 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 gtcgtcgacgaggccaccaa 224 |||||||||||||||||||| Sbjct: 160 gtcgtcgacgaggccaccaa 179
>ref|XM_721991.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06432) partial mRNA Length = 630 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ttcttgctgatgacacatgt 357 |||||||||||||||||||| Sbjct: 299 ttcttgctgatgacacatgt 318
>ref|XM_739439.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000755.04.0) partial mRNA Length = 852 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ttcttgctgatgacacatgt 357 |||||||||||||||||||| Sbjct: 299 ttcttgctgatgacacatgt 318
>ref|XM_506097.1| Yarrowia lipolytica CLIB122, YALI0F31471g predicted mRNA Length = 1662 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ccaaggccaagaaggactac 162 |||||||||||||||||||| Sbjct: 527 ccaaggccaagaaggactac 546
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggcgacccccaacccgccgc 109 |||||||||||||||||||| Sbjct: 1748526 ggcgacccccaacccgccgc 1748507
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 ctgttcaccaatgccctgat 447 |||||||||||||||||||| Sbjct: 310039 ctgttcaccaatgccctgat 310058
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 ctgttcaccaatgccctgat 447 |||||||||||||||||||| Sbjct: 278540 ctgttcaccaatgccctgat 278559
>emb|BX294140.1| Pirellula sp. strain 1 complete genome; segment 8/24 Length = 307050 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 acaatctgcattgttcttgc 344 |||||||||||||||||||| Sbjct: 62954 acaatctgcattgttcttgc 62973
>emb|AL162751.1|ATF12E4 Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA project) Length = 121552 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 427 tctgttcaccaatgccctgatgtc 450 ||||||||||||||||| |||||| Sbjct: 26227 tctgttcaccaatgcccagatgtc 26204
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 tggagaggctccagctcttc 282 |||||||||||||||||||| Sbjct: 945850 tggagaggctccagctcttc 945831
>dbj|AB207138.1| Oryzias latipes nppc3 and nppb genes for C-type natriuretic peptide-3 precursor, B-type natriuretic peptide precursor, complete cds Length = 38866 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 caacccgccgccccagcagg 118 |||||||||||||||||||| Sbjct: 7050 caacccgccgccccagcagg 7069
>gb|AC010560.9| Drosophila melanogaster 3L BAC RPCI98-16K12 (Roswell Park Cancer Institute Drosophila BAC library) complete sequence Length = 167595 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 caaggccaagaaggactact 163 |||||||||||||||||||| Sbjct: 51194 caaggccaagaaggactact 51213
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gcctcgtcgtcgacgaggcc 219 |||||||||||||||||||| Sbjct: 3734255 gcctcgtcgtcgacgaggcc 3734274
>gb|BT006485.1| Arabidopsis thaliana At5g03340 gene, complete cds Length = 2433 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 427 tctgttcaccaatgccctgatgtc 450 ||||||||||||||||| |||||| Sbjct: 313 tctgttcaccaatgcccagatgtc 336
>emb|BX640536.6| Zebrafish DNA sequence from clone CH211-191A6 in linkage group 5, complete sequence Length = 137923 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tcaggaaaaacttgagagtg 408 |||||||||||||||||||| Sbjct: 83300 tcaggaaaaacttgagagtg 83319
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 acaatctgcattgttcttgc 344 |||||||||||||||||||| Sbjct: 9607274 acaatctgcattgttcttgc 9607255 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgccgccgacgatccccgga 77 |||||||||||||||||||| Sbjct: 4423908 cgccgccgacgatccccgga 4423889
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 cgagccctcctcctccgccg 139 |||||||||||||||||||| Sbjct: 17301895 cgagccctcctcctccgccg 17301914
>gb|AC084461.1|AC084461 Caenorhabditis briggsae cosmid CB033H10, complete sequence Length = 85796 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 gttcttgctgatgacacatg 356 |||||||||||||||||||| Sbjct: 2957 gttcttgctgatgacacatg 2976
>gb|AY190939.1| Drosophila erecta clone DERF01_42_I03 (D1420) genomic sequence Length = 45909 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 cagctcttccgcggcgacaccgtc 297 ||||||||||| |||||||||||| Sbjct: 36942 cagctcttccgtggcgacaccgtc 36965
>emb|AJ495765.2|POL495765 Polytomella sp. 'Pringsheim 198.80' partial mRNA for mitochondrial targeted aldehyde-alcohol dehydrogenase (adhE gene) Length = 2714 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 cgtcgccctccaccccgacaccat 263 ||||||| |||||||||||||||| Sbjct: 1716 cgtcgccttccaccccgacaccat 1739
>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1279D09 Length = 134793 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgccgccgacgatccccgga 77 |||||||||||||||||||| Sbjct: 126726 cgccgccgacgatccccgga 126707
>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0706E03 Length = 188028 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 acaatctgcattgttcttgc 344 |||||||||||||||||||| Sbjct: 47371 acaatctgcattgttcttgc 47352
>dbj|AK118571.1| Arabidopsis thaliana At5g03340 mRNA for putative transitional endoplasmic reticulum ATPase, complete cds, clone: RAFL19-80-L03 Length = 2671 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 427 tctgttcaccaatgccctgatgtc 450 ||||||||||||||||| |||||| Sbjct: 408 tctgttcaccaatgcccagatgtc 431
>dbj|AK117125.1| Arabidopsis thaliana At5g03340 mRNA for putative transitional endoplasmic reticulum ATPase, complete cds, clone: RAFL16-66-D01 Length = 2664 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 427 tctgttcaccaatgccctgatgtc 450 ||||||||||||||||| |||||| Sbjct: 401 tctgttcaccaatgcccagatgtc 424
>dbj|AK071503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091N08, full insert sequence Length = 1293 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 cgagccctcctcctccgccg 139 |||||||||||||||||||| Sbjct: 10 cgagccctcctcctccgccg 29
>gb|AE003550.4| Drosophila melanogaster chromosome 3L, section 35 of 83 of the complete sequence Length = 304975 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caaggccaagaaggactact 163 |||||||||||||||||||| Sbjct: 290872 caaggccaagaaggactact 290853
>dbj|AP000486.6| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-23I22, complete sequence Length = 152472 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 agggtaaaaagaggaaagac 324 |||||||||||||||||||| Sbjct: 77138 agggtaaaaagaggaaagac 77119
>gb|AY609417.1| Sus scrofa clone Clu_1080.scr.msk.p1.Contig5, mRNA sequence Length = 3968 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 330 ctgcattgttcttgctgatgacacatgt 357 ||||||||| ||| |||||||||||||| Sbjct: 381 ctgcattgtgctttctgatgacacatgt 408
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ccaaggccaagaaggactac 162 |||||||||||||||||||| Sbjct: 3912097 ccaaggccaagaaggactac 3912116 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,871,828 Number of Sequences: 3902068 Number of extensions: 4871828 Number of successful extensions: 94455 Number of sequences better than 10.0: 98 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92894 Number of HSP's gapped (non-prelim): 1548 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)