ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOP14_HUMAN (P78316) Probable nucleolar complex protein 14 59 4e-09
2NOP14_MOUSE (Q8R3N1) Probable nucleolar complex protein 14 58 1e-08
3NOP14_SCHPO (O43051) Probable nucleolar complex protein 14 41 0.002
4NOP14_YARLI (Q6C2F4) Probable nucleolar complex protein 14 33 0.34
5GUX1_TRIHA (Q9P8P3) Exoglucanase 1 precursor (EC 3.2.1.91) (Exog... 30 2.9
6RAGE_BOVIN (Q28173) Advanced glycosylation end product-specific ... 28 8.4
7FA44B_XENTR (Q68FB1) Protein FAM44B 28 8.4

>NOP14_HUMAN (P78316) Probable nucleolar complex protein 14|
          Length = 857

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 29/67 (43%), Positives = 44/67 (65%)
 Frame = +1

Query: 256 SNPFEAIWSRRKFDVLGKKRKGEERRTPRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRI 435
           SNPFE   +R+KF +LG+K + +      SR+ A+ KR  TLLKE+++  KS+VF D+R 
Sbjct: 29  SNPFEVKVNRQKFQILGRKTRHDVGLPGVSRARALRKRTQTLLKEYKERDKSNVFRDKRF 88

Query: 436 GERDETL 456
           GE +  +
Sbjct: 89  GEYNSNM 95



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>NOP14_MOUSE (Q8R3N1) Probable nucleolar complex protein 14|
          Length = 860

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 28/66 (42%), Positives = 43/66 (65%)
 Frame = +1

Query: 259 NPFEAIWSRRKFDVLGKKRKGEERRTPRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRIG 438
           NPFE   +R+KF +LG+K + +      SR+ A+ KR  TLLKE+++  KS+VF D+R G
Sbjct: 30  NPFEVKVNRQKFQILGRKTRHDVGLPGVSRARAIRKRTQTLLKEYKERNKSNVFADKRFG 89

Query: 439 ERDETL 456
           E +  +
Sbjct: 90  EYNSNI 95



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>NOP14_SCHPO (O43051) Probable nucleolar complex protein 14|
          Length = 827

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = +1

Query: 259 NPFEAIWSRRKFDVLGKKRKGEERRTPRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRIG 438
           N F+  +++RKFDV G++ KG E +   SR      R  T+  E ++  +S    DRR G
Sbjct: 52  NLFDRQFTKRKFDVGGRRVKGTEGKPGVSRGVGEELRRRTIGAELKKRNRSGAIIDRRFG 111

Query: 439 ERDETL 456
           E +  L
Sbjct: 112 ENNPHL 117



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>NOP14_YARLI (Q6C2F4) Probable nucleolar complex protein 14|
          Length = 832

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +1

Query: 250 ERSNPFEAIWSRRKFDVLGKKRKGEERRTPRSRSDAVHKRENTLLKEFEQSAKSSVFHDR 429
           ++ NPF+   +R+K D+ G+  +G   R   S+      R      E +   +     DR
Sbjct: 50  QQFNPFDVKVARKKHDIGGRTVRGSVGRPGLSKLSGEEARMEARKLELQNKGRVGGVFDR 109

Query: 430 RIGERDETL 456
           R GE D  +
Sbjct: 110 RFGEGDSNM 118



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>GUX1_TRIHA (Q9P8P3) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)|
           (Exocellobiohydrolase I) (CBHI)
           (1,4-beta-cellobiohydrolase)
          Length = 505

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 297 RARQEAQGRGEAHPPLPLRRCPQEGEHPAQG 389
           RA+Q    + E HPPL  ++C   G  P QG
Sbjct: 16  RAQQVCTQQAETHPPLTWQKCTASGCTPQQG 46



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>RAGE_BOVIN (Q28173) Advanced glycosylation end product-specific receptor|
           precursor (Receptor for advanced glycosylation end
           products)
          Length = 416

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 274 IWSRRKFDVLGKKRKGEERRTPRSRSDAVHKRENTLLKEFEQSAKSS 414
           +W RR+      +RKG+ER+ P ++ +   +R      E  ++A+SS
Sbjct: 372 VWHRRR------QRKGQERKVPENQEEEEEERAELNQPEEPEAAESS 412



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>FA44B_XENTR (Q68FB1) Protein FAM44B|
          Length = 169

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 261 PLRGHLVAPQVRRARQE---AQGRGEAHPPLPLRRC-PQEGEHP 380
           P   H+  PQ+ +A QE   AQ + E  PPLP     PQE E P
Sbjct: 119 PKLNHIFRPQIEKAIQEYLAAQTKEEPAPPLPPGPPEPQEQEPP 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,520,994
Number of Sequences: 219361
Number of extensions: 420974
Number of successful extensions: 2018
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2015
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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