Clone Information

BLAST Search Result

Clone Name	bastl29h05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY103663.1\| Zea mays PCO090448 mRNA sequence	78	3e-11
2	gb\|AY596572.1\| Saccharum officinarum clone SCCCLR2C02E05, comple...	64	4e-07
3	ref\|NM_188689.1\| Oryza sativa (japonica cultivar-group), predic...	52	0.002
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
5	dbj\|AP002855.2\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
6	dbj\|AK063106.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
7	dbj\|AK062403.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
8	ref\|XM_464654.1\| Oryza sativa (japonica cultivar-group), mRNA	48	0.024
9	ref\|XM_507463.1\| PREDICTED Oryza sativa (japonica cultivar-group...	48	0.024
10	ref\|XM_507462.1\| PREDICTED Oryza sativa (japonica cultivar-group...	48	0.024
11	ref\|XM_506759.2\| PREDICTED Oryza sativa (japonica cultivar-group...	48	0.024
12	ref\|XM_464653.1\| Oryza sativa (japonica cultivar-group), mRNA	48	0.024
13	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.024
14	dbj\|AP005846.2\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.024
15	dbj\|AK104214.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.024
16	dbj\|AK102313.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.024
17	dbj\|AK102090.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.024
18	dbj\|AK100425.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.024
19	dbj\|AK066602.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.024
20	dbj\|AK070589.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.024
21	dbj\|AK066371.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.024
22	dbj\|AK061737.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.024
23	dbj\|AK061431.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.024
24	dbj\|AK060730.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.024
25	dbj\|AK060081.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.024
26	gb\|AE000516.2\| Mycobacterium tuberculosis CDC1551, complete genome	44	0.37
27	emb\|BX842577.1\| Mycobacterium tuberculosis H37Rv complete genome...	44	0.37
28	emb\|BX248339.1\| Mycobacterium bovis subsp. bovis AF2122/97 compl...	44	0.37
29	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.37
30	dbj\|AP005755.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.37
31	dbj\|AP006849.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.37
32	emb\|AJ426486.1\|MTU426486 Mycobacterium tuberculosis mmpS6 gene a...	44	0.37
33	dbj\|AK067260.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.37
34	gb\|CP000143.1\| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl...	42	1.5
35	gb\|AC158625.9\| Mus musculus 6 BAC RP23-78J15 (Roswell Park Cance...	42	1.5
36	gb\|AC155944.3\| Mus musculus 6 BAC RP24-493P12 (Roswell Park Canc...	42	1.5
37	gb\|AY106133.1\| Zea mays PCO065790 mRNA sequence	42	1.5
38	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	42	1.5
39	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	42	1.5
40	ref\|XM_480435.1\| Oryza sativa (japonica cultivar-group), mRNA	40	5.7
41	ref\|XM_761134.1\| Theileria parva strain Muguga chromosome 1 chap...	40	5.7
42	gb\|AC130808.36\| Medicago truncatula clone mth2-34k9, complete se...	40	5.7
43	emb\|BX323845.6\| Human DNA sequence from clone RP11-272G22 on chr...	40	5.7
44	ref\|XM_784728.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	5.7
45	emb\|AL939128.1\|SCO939128 Streptomyces coelicolor A3(2) complete ...	40	5.7
46	gb\|AY643478.1\| Edwardsiella tarda strain PPD130/91 putative type...	40	5.7
47	emb\|BX323842.8\| Zebrafish DNA sequence from clone CH211-1M7, com...	40	5.7
48	gb\|AC008661.6\| Homo sapiens chromosome 5 clone CTB-28J9, complet...	40	5.7
49	gb\|AC099005.1\| Drosophila melanogaster, chromosome 2R, region 52...	40	5.7
50	gb\|AC147482.2\| Medicago truncatula chromosome 7 BAC clone mth2-9...	40	5.7
51	gb\|AC009014.5\| Homo sapiens chromosome 5 clone P1_748D6, complet...	40	5.7
52	gb\|CP000230.1\| Rhodospirillum rubrum ATCC 11170, complete genome	40	5.7
53	tpg\|BK001744.1\| TPA: TPA_exp: Suid herpesvirus 1, complete genome	40	5.7
54	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
55	dbj\|AP004568.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
56	dbj\|AP004656.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
57	dbj\|AK120496.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.7
58	gb\|AC157488.1\| Medicago truncatula chromosome 2 BAC clone mte1-3...	40	5.7
59	gb\|AC008369.1\|AC008369 Drosophila melanogaster, chromosome 2R, r...	40	5.7
60	gb\|AE003810.3\| Drosophila melanogaster chromosome 2R, section 40...	40	5.7
61	gb\|M34651.1\|SH1PROIE Pseudorabies virus with upstream and downst...	40	5.7
62	dbj\|AB077993.1\| Oryza sativa mRNA for Roc1, complete cds	40	5.7

>gb|AY103663.1| Zea mays PCO090448 mRNA sequence
          Length = 1924

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 120/147 (81%)
 Strand = Plus / Plus

                                                                       
Query: 62  atggcggagttctcgtggctcacggcgctagggttcgccttcctgaccttcaactctggc 121
           ||||| || ||||| |||||||||| ||| || |||   ||||| ||||||||||| |||
Sbjct: 263 atggccgacttctcctggctcacggtgcttggcttcctattcctcaccttcaactcaggc 322

                                                                       
Query: 122 atggccctctaccgctccaacggcgacgcgggctccgtcatcttcgtcgccgtatcctac 181
           |||||  | || || |||||||| ||||| |||||||||   |||||||  ||||| || 
Sbjct: 323 atggcgatttatcggtccaacggtgacgccggctccgtcgctttcgtcgtggtatcttat 382

                                      
Query: 182 ctcgacctcgtggccctcttcgcctgc 208
           |||||||| |||||||| |||||||||
Sbjct: 383 ctcgacctggtggccctgttcgcctgc 409



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 339 tcaagcttgtggtctgggcgatggccgccgccaccacctgcggcggcttctacg 392
           |||| ||||| |||||| ||||||| ||||| |||||||| |||||||||||||
Sbjct: 543 tcaaacttgttgtctggtcgatggcagccgctaccacctgtggcggcttctacg 596

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>gb|AY596572.1| Saccharum officinarum clone SCCCLR2C02E05, complete sequence
          Length = 1513

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                        
Query: 237  actcccctcgccgggagcggatcaaggccgccgtctgggcactcaccacgctgctcaccg 296
            |||| |||||||| | | || ||||||||  ||||||||| || ||||||||||||||||
Sbjct: 1064 actcacctcgccgcgggtggctcaaggcctgcgtctgggcgctgaccacgctgctcaccg 1123

                    
Query: 297  tcatgttc 304
            ||||||||
Sbjct: 1124 tcatgttc 1131



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                       
Query: 71  ttctcgtggctcacggcgctagggttcgccttcctgaccttcaactctggcatggccctc 130
           ||||| ||||| || ||||| || ||||  ||||||||||||||||| ||||||||  ||
Sbjct: 898 ttctcatggctaacagcgctcggtttcgggttcctgaccttcaactcgggcatggcgatc 957

                              
Query: 131 taccgctccaacggcgacg 149
           ||||||||| || ||||||
Sbjct: 958 taccgctccgaccgcgacg 976

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>ref|NM_188689.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 369

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 87  cgctagggttcgccttcctgaccttcaactctggcatggccctctaccgctcca 140
           |||| |||||||| ||||||| ||||||||  ||||||||  ||||||||||||
Sbjct: 35  cgctggggttcgcgttcctgagcttcaactgcggcatggcgatctaccgctcca 88



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 282 ccacgctgctcaccgtcatgttcacctacaaagtcgccgaggtcatgccgctc 334
           ||||||| |||||  |||||||| ||||||| |||||||   |||||||||||
Sbjct: 230 ccacgctcctcacgctcatgttctcctacaaggtcgccgccatcatgccgctc 282

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                     
Query: 87      cgctagggttcgccttcctgaccttcaactctggcatggccctctaccgctcca 140
               |||| |||||||| ||||||| ||||||||  ||||||||  ||||||||||||
Sbjct: 7655421 cgctggggttcgcgttcctgagcttcaactgcggcatggcgatctaccgctcca 7655368



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                    
Query: 282     ccacgctgctcaccgtcatgttcacctacaaagtcgccgaggtcatgccgctc 334
               ||||||| |||||  |||||||| ||||||| |||||||   |||||||||||
Sbjct: 7655226 ccacgctcctcacgctcatgttctcctacaaggtcgccgccatcatgccgctc 7655174

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>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0086P08
          Length = 145312

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 87    cgctagggttcgccttcctgaccttcaactctggcatggccctctaccgctcca 140
             |||| |||||||| ||||||| ||||||||  ||||||||  ||||||||||||
Sbjct: 65997 cgctggggttcgcgttcctgagcttcaactgcggcatggcgatctaccgctcca 65944



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 282   ccacgctgctcaccgtcatgttcacctacaaagtcgccgaggtcatgccgctc 334
             ||||||| |||||  |||||||| ||||||| |||||||   |||||||||||
Sbjct: 65802 ccacgctcctcacgctcatgttctcctacaaggtcgccgccatcatgccgctc 65750

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>dbj|AK063106.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-D02, full
           insert sequence
          Length = 661

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 87  cgctagggttcgccttcctgaccttcaactctggcatggccctctaccgctcca 140
           |||| |||||||| ||||||| ||||||||  ||||||||  ||||||||||||
Sbjct: 96  cgctggggttcgcgttcctgagcttcaactgcggcatggcgatctaccgctcca 149

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>dbj|AK062403.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-E05, full
           insert sequence
          Length = 653

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 87  cgctagggttcgccttcctgaccttcaactctggcatggccctctaccgctcca 140
           |||| |||||||| ||||||| ||||||||  ||||||||  ||||||||||||
Sbjct: 96  cgctggggttcgcgttcctgagcttcaactgcggcatggcgatctaccgctcca 149

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>ref|XM_464654.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 930

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 353 ttcgccttcctgaccttcaactcgggaatggc 384

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>ref|XM_507463.1| PREDICTED Oryza sativa (japonica cultivar-group), B1307A11.18-2
           mRNA
          Length = 1203

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 353 ttcgccttcctgaccttcaactcgggaatggc 384

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>ref|XM_507462.1| PREDICTED Oryza sativa (japonica cultivar-group), B1307A11.18-2
           mRNA
          Length = 1222

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 353 ttcgccttcctgaccttcaactcgggaatggc 384

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>ref|XM_506759.2| PREDICTED Oryza sativa (japonica cultivar-group), B1307A11.18-2
           mRNA
          Length = 1346

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 355 ttcgccttcctgaccttcaactcgggaatggc 386

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>ref|XM_464653.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1179

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 353 ttcgccttcctgaccttcaactcgggaatggc 384

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 95      ttcgccttcctgaccttcaactctggcatggc 126
               ||||||||||||||||||||||| || |||||
Sbjct: 6511077 ttcgccttcctgaccttcaactcgggaatggc 6511046

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>dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1307A11
          Length = 131538

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 95    ttcgccttcctgaccttcaactctggcatggc 126
             ||||||||||||||||||||||| || |||||
Sbjct: 71690 ttcgccttcctgaccttcaactcgggaatggc 71659

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>dbj|AK104214.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G03, full
           insert sequence
          Length = 1221

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 353 ttcgccttcctgaccttcaactcgggaatggc 384

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>dbj|AK102313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090E15, full
           insert sequence
          Length = 3458

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 355 ttcgccttcctgaccttcaactcgggaatggc 386

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>dbj|AK102090.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082P21, full
           insert sequence
          Length = 3425

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 354 ttcgccttcctgaccttcaactcgggaatggc 385

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>dbj|AK100425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C01, full
            insert sequence
          Length = 2901

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 95   ttcgccttcctgaccttcaactctggcatggc 126
            ||||||||||||||||||||||| || |||||
Sbjct: 1853 ttcgccttcctgaccttcaactcgggaatggc 1884

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>dbj|AK066602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071E20, full
            insert sequence
          Length = 2354

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 95   ttcgccttcctgaccttcaactctggcatggc 126
            ||||||||||||||||||||||| || |||||
Sbjct: 1853 ttcgccttcctgaccttcaactcgggaatggc 1884

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>dbj|AK070589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063I08, full
           insert sequence
          Length = 1346

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 355 ttcgccttcctgaccttcaactcgggaatggc 386

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>dbj|AK066371.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065L09, full
           insert sequence
          Length = 1833

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 869 ttcgccttcctgaccttcaactcgggaatggc 900

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>dbj|AK061737.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D11, full
           insert sequence
          Length = 1203

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 353 ttcgccttcctgaccttcaactcgggaatggc 384

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>dbj|AK061431.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-H07, full
           insert sequence
          Length = 1179

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 353 ttcgccttcctgaccttcaactcgggaatggc 384

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>dbj|AK060730.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-A03, full
           insert sequence
          Length = 3426

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 357 ttcgccttcctgaccttcaactcgggaatggc 388

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>dbj|AK060081.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D02, full
           insert sequence
          Length = 930

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 95  ttcgccttcctgaccttcaactctggcatggc 126
           ||||||||||||||||||||||| || |||||
Sbjct: 353 ttcgccttcctgaccttcaactcgggaatggc 384

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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 256     gatcaaggccgccgtctgggca 277
               ||||||||||||||||||||||
Sbjct: 1762155 gatcaaggccgccgtctgggca 1762134

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>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13
          Length = 347496

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 256   gatcaaggccgccgtctgggca 277
             ||||||||||||||||||||||
Sbjct: 30744 gatcaaggccgccgtctgggca 30723

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>emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 6/14
          Length = 300050

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 256    gatcaaggccgccgtctgggca 277
              ||||||||||||||||||||||
Sbjct: 134173 gatcaaggccgccgtctgggca 134152

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 364      cgccgccaccacctgcggcggcttct 389
                |||||||||||||||| |||||||||
Sbjct: 17444329 cgccgccaccacctgctgcggcttct 17444304

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>dbj|AP005755.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OSJNBb0019B14
          Length = 127570

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 364  cgccgccaccacctgcggcggcttct 389
            |||||||||||||||| |||||||||
Sbjct: 8507 cgccgccaccacctgctgcggcttct 8482

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>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0054F02
          Length = 180651

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 364    cgccgccaccacctgcggcggcttct 389
              |||||||||||||||| |||||||||
Sbjct: 168242 cgccgccaccacctgctgcggcttct 168217

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>emb|AJ426486.1|MTU426486 Mycobacterium tuberculosis mmpS6 gene and mmpL6 gene
          Length = 3953

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 256  gatcaaggccgccgtctgggca 277
            ||||||||||||||||||||||
Sbjct: 2702 gatcaaggccgccgtctgggca 2681

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>dbj|AK067260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096N13, full
           insert sequence
          Length = 1615

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 364 cgccgccaccacctgcggcggcttct 389
           |||||||||||||||| |||||||||
Sbjct: 177 cgccgccaccacctgctgcggcttct 152

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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 249     gggagcggatcaaggccgccg 269
               |||||||||||||||||||||
Sbjct: 1590277 gggagcggatcaaggccgccg 1590297

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>gb|AC158625.9| Mus musculus 6 BAC RP23-78J15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 246705

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 100    cttcctgaccttcaactctgg 120
              |||||||||||||||||||||
Sbjct: 225253 cttcctgaccttcaactctgg 225233

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>gb|AC155944.3| Mus musculus 6 BAC RP24-493P12 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 137474

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   cttcctgaccttcaactctgg 120
             |||||||||||||||||||||
Sbjct: 50411 cttcctgaccttcaactctgg 50391

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>gb|AY106133.1| Zea mays PCO065790 mRNA sequence
          Length = 762

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 95  ttcgccttcctgaccttcaactctggcatggccctctaccgctcc 139
           ||||||||||| | ||||||||  || |||||| |||||||||||
Sbjct: 227 ttcgccttcctcagcttcaactgcgggatggccgtctaccgctcc 271

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 139     caacggcgacgcgggctccgtcatcttcgtcgc 171
               |||||||| ||||||  ||||||||||||||||
Sbjct: 2398678 caacggcgccgcgggtgccgtcatcttcgtcgc 2398710

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 215    ctctacgagcgcctcgaccgc 235
              |||||||||||||||||||||
Sbjct: 135931 ctctacgagcgcctcgaccgc 135951

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>ref|XM_480435.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3294

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 250  ggagcggatcaaggccgccgtctg 273
            |||||| |||||||||||||||||
Sbjct: 2731 ggagcgcatcaaggccgccgtctg 2754

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>ref|XM_761134.1| Theileria parva strain Muguga chromosome 1 chaperone protein DnaJ
            (TP01_0706) partial mRNA
          Length = 1508

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 150  cgggctccgtcatcttcgtc 169
            ||||||||||||||||||||
Sbjct: 981  cgggctccgtcatcttcgtc 1000

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>gb|AC130808.36| Medicago truncatula clone mth2-34k9, complete sequence
          Length = 113091

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   gatggccgccgccaccacct 377
             ||||||||||||||||||||
Sbjct: 96786 gatggccgccgccaccacct 96805

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>emb|BX323845.6| Human DNA sequence from clone RP11-272G22 on chromosome X Contains a
            pseudogene similar to part of
            6-phosphofructo-2-kinase/fructose-2 6-biphosphatase 1
            (PFKFB1), a pseudogene similar to part of ribosomal
            protein S13 (RPS13) and a mitochondrial ribosomal protein
            L32 (MRPL32) pseudogene, complete sequence
          Length = 86141

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 384  gcttctacgtcttcttcctc 403
            ||||||||||||||||||||
Sbjct: 5065 gcttctacgtcttcttcctc 5046

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>ref|XM_784728.1| PREDICTED: Strongylocentrotus purpuratus similar to tubulin, beta, 2
            (LOC584883), mRNA
          Length = 1353

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 381  gcggcttctacgtcttcttcctcc 404
            ||||||||| ||||||||||||||
Sbjct: 1349 gcggcttcttcgtcttcttcctcc 1326

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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   caccacgctgctcaccgtca 299
             ||||||||||||||||||||
Sbjct: 67663 caccacgctgctcaccgtca 67682

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>gb|AY643478.1| Edwardsiella tarda strain PPD130/91 putative type III secretion system
             gene cluster, complete sequence
          Length = 41204

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   ggagcggatcaaggccgccg 269
             ||||||||||||||||||||
Sbjct: 19122 ggagcggatcaaggccgccg 19103

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>emb|BX323842.8| Zebrafish DNA sequence from clone CH211-1M7, complete sequence
          Length = 162929

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    atggccgccgccaccacctg 378
              ||||||||||||||||||||
Sbjct: 150460 atggccgccgccaccacctg 150441

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>gb|AC008661.6| Homo sapiens chromosome 5 clone CTB-28J9, complete sequence
          Length = 188548

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   ttcgcctgcctccgcctcta 219
             ||||||||||||||||||||
Sbjct: 10859 ttcgcctgcctccgcctcta 10878

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>gb|AC099005.1| Drosophila melanogaster, chromosome 2R, region 52B-52C, BAC clone
            BACR11I22, complete sequence
          Length = 173165

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   gcagcagcatcggcgatggc 66
            ||||||||||||||||||||
Sbjct: 1561 gcagcagcatcggcgatggc 1542

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>gb|AC147482.2| Medicago truncatula chromosome 7 BAC clone mth2-93e11, complete
             sequence
          Length = 119127

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   gatggccgccgccaccacct 377
             ||||||||||||||||||||
Sbjct: 53064 gatggccgccgccaccacct 53045

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>gb|AC009014.5| Homo sapiens chromosome 5 clone P1_748D6, complete sequence
          Length = 88365

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  ttcgcctgcctccgcctcta 219
            ||||||||||||||||||||
Sbjct: 7326 ttcgcctgcctccgcctcta 7307

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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 355     ggcgatggccgccgccacca 374
               ||||||||||||||||||||
Sbjct: 3571476 ggcgatggccgccgccacca 3571457

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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    gggcgatggccgccgccacc 373
              ||||||||||||||||||||
Sbjct: 134463 gggcgatggccgccgccacc 134444



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 354    gggcgatggccgccgccacc 373
              ||||||||||||||||||||
Sbjct: 110139 gggcgatggccgccgccacc 110158

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 250     ggagcggatcaaggccgccgtctg 273
               |||||| |||||||||||||||||
Sbjct: 5109777 ggagcgcatcaaggccgccgtctg 5109800

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>dbj|AP004568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0547A06
          Length = 150922

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 250    ggagcggatcaaggccgccgtctg 273
              |||||| |||||||||||||||||
Sbjct: 147334 ggagcgcatcaaggccgccgtctg 147357

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>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0020B10
          Length = 136175

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 250   ggagcggatcaaggccgccgtctg 273
             |||||| |||||||||||||||||
Sbjct: 59541 ggagcgcatcaaggccgccgtctg 59564

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>dbj|AK120496.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120I03, full
            insert sequence
          Length = 3280

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 250  ggagcggatcaaggccgccgtctg 273
            |||||| |||||||||||||||||
Sbjct: 2717 ggagcgcatcaaggccgccgtctg 2740

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>gb|AC157488.1| Medicago truncatula chromosome 2 BAC clone mte1-33n12, complete
             sequence
          Length = 93219

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   gatggccgccgccaccacct 377
             ||||||||||||||||||||
Sbjct: 28635 gatggccgccgccaccacct 28616

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>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones
              BACR48C01 and DS08592, complete sequence
          Length = 192366

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     gcagcagcatcggcgatggc 66
              ||||||||||||||||||||
Sbjct: 133213 gcagcagcatcggcgatggc 133194

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>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete
              sequence
          Length = 271178

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     gcagcagcatcggcgatggc 66
              ||||||||||||||||||||
Sbjct: 210571 gcagcagcatcggcgatggc 210552

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>gb|M34651.1|SH1PROIE Pseudorabies virus with upstream and downsteam sequences
          Length = 15141

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 354  gggcgatggccgccgccacc 373
            ||||||||||||||||||||
Sbjct: 2887 gggcgatggccgccgccacc 2868

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>dbj|AB077993.1| Oryza sativa mRNA for Roc1, complete cds
          Length = 3196

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 250  ggagcggatcaaggccgccgtctg 273
            |||||| |||||||||||||||||
Sbjct: 2627 ggagcgcatcaaggccgccgtctg 2650


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,730,102
Number of Sequences: 3902068
Number of extensions: 2730102
Number of successful extensions: 76037
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75144
Number of HSP's gapped (non-prelim): 893
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result