ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29h04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101303.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033K21, full insert sequence Length = 2964 Score = 280 bits (141), Expect = 4e-72 Identities = 266/308 (86%), Gaps = 6/308 (1%) Strand = Plus / Plus Query: 109 cgccgtcgccgccatgatcaccggcggccagagctacgtctcggcgccgccggccttctc 168 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 51 cgccgccgccgccatgatcaccggcggccagagctacgtctccgcgccgccggccttctc 110 Query: 169 cgcggacggccgcttcctcctcgtctgctccggccgctccgtctccgtcttcagcacctc 228 || ||||| || ||||||||| |||| |||||||| ||||||||||||||||| |||| Sbjct: 111 ggccgacgggcgtctcctcctcgcctgcaccggccgcaccgtctccgtcttcagcgcctc 170 Query: 229 caccggcatgctggtttcggagctggaggggcacgagggggacgtcaccgccgtcgtcgt 288 ||||||||||||||| |||||||||||||||||||||||||||||||| || || || || Sbjct: 171 caccggcatgctggtgtcggagctggaggggcacgagggggacgtcacggcggtggtggt 230 Query: 289 ggtgccgccgcagggcaacgccgcggcgaccgccaagctcgcgagccactgctggacggc 348 || |||||||| | | |||||| | || |||||||||||| ||||||||||||| Sbjct: 231 ggcgccgccgccg------gtggcggcggcggcgaagctcgcgagctactgctggacggc 284 Query: 349 tgggctcgacggtttcctcatctactgggacttcgccaccgccgagctggtgcggaaggt 408 ||||| ||||| || || | |||||||||||||| | || ||||||||||||||||| Sbjct: 285 ggggcttgacgggtttctggtttactgggacttcgcggcggcggagctggtgcggaaggt 344 Query: 409 caaggtcg 416 | |||||| Sbjct: 345 ccaggtcg 352
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 180 bits (91), Expect = 3e-42 Identities = 124/135 (91%) Strand = Plus / Plus Query: 109 cgccgtcgccgccatgatcaccggcggccagagctacgtctcggcgccgccggccttctc 168 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 25785736 cgccgccgccgccatgatcaccggcggccagagctacgtctccgcgccgccggccttctc 25785795 Query: 169 cgcggacggccgcttcctcctcgtctgctccggccgctccgtctccgtcttcagcacctc 228 || ||||| || ||||||||| |||| |||||||| ||||||||||||||||| |||| Sbjct: 25785796 ggccgacgggcgtctcctcctcgcctgcaccggccgcaccgtctccgtcttcagcgcctc 25785855 Query: 229 caccggcatgctggt 243 ||||||||||||||| Sbjct: 25785856 caccggcatgctggt 25785870 Score = 105 bits (53), Expect = 1e-19 Identities = 142/172 (82%), Gaps = 6/172 (3%) Strand = Plus / Plus Query: 245 tcggagctggaggggcacgagggggacgtcaccgccgtcgtcgtggtgccgccgcagggc 304 |||||||||||||||||||||||||||||||| || || || |||| |||||||| || Sbjct: 25785956 tcggagctggaggggcacgagggggacgtcacggcggtggtggtggcgccgccgccggtg 25786015 Query: 305 aacgccgcggcgaccgccaagctcgcgagccactgctggacggctgggctcgacggtttc 364 |||||| | || |||||||||||| ||||||||||||| ||||| ||||| || Sbjct: 25786016 ------gcggcggcggcgaagctcgcgagctactgctggacggcggggcttgacgggttt 25786069 Query: 365 ctcatctactgggacttcgccaccgccgagctggtgcggaaggtcaaggtcg 416 || | |||||||||||||| | || |||||||||||||||||| |||||| Sbjct: 25786070 ctggtttactgggacttcgcggcggcggagctggtgcggaaggtccaggtcg 25786121
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 180 bits (91), Expect = 3e-42 Identities = 124/135 (91%) Strand = Plus / Plus Query: 109 cgccgtcgccgccatgatcaccggcggccagagctacgtctcggcgccgccggccttctc 168 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 25713912 cgccgccgccgccatgatcaccggcggccagagctacgtctccgcgccgccggccttctc 25713971 Query: 169 cgcggacggccgcttcctcctcgtctgctccggccgctccgtctccgtcttcagcacctc 228 || ||||| || ||||||||| |||| |||||||| ||||||||||||||||| |||| Sbjct: 25713972 ggccgacgggcgtctcctcctcgcctgcaccggccgcaccgtctccgtcttcagcgcctc 25714031 Query: 229 caccggcatgctggt 243 ||||||||||||||| Sbjct: 25714032 caccggcatgctggt 25714046 Score = 105 bits (53), Expect = 1e-19 Identities = 142/172 (82%), Gaps = 6/172 (3%) Strand = Plus / Plus Query: 245 tcggagctggaggggcacgagggggacgtcaccgccgtcgtcgtggtgccgccgcagggc 304 |||||||||||||||||||||||||||||||| || || || |||| |||||||| || Sbjct: 25714132 tcggagctggaggggcacgagggggacgtcacggcggtggtggtggcgccgccgccggtg 25714191 Query: 305 aacgccgcggcgaccgccaagctcgcgagccactgctggacggctgggctcgacggtttc 364 |||||| | || |||||||||||| ||||||||||||| ||||| ||||| || Sbjct: 25714192 ------gcggcggcggcgaagctcgcgagctactgctggacggcggggcttgacgggttt 25714245 Query: 365 ctcatctactgggacttcgccaccgccgagctggtgcggaaggtcaaggtcg 416 || | |||||||||||||| | || |||||||||||||||||| |||||| Sbjct: 25714246 ctggtttactgggacttcgcggcggcggagctggtgcggaaggtccaggtcg 25714297
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 180 bits (91), Expect = 3e-42 Identities = 124/135 (91%) Strand = Plus / Plus Query: 109 cgccgtcgccgccatgatcaccggcggccagagctacgtctcggcgccgccggccttctc 168 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 7187 cgccgccgccgccatgatcaccggcggccagagctacgtctccgcgccgccggccttctc 7246 Query: 169 cgcggacggccgcttcctcctcgtctgctccggccgctccgtctccgtcttcagcacctc 228 || ||||| || ||||||||| |||| |||||||| ||||||||||||||||| |||| Sbjct: 7247 ggccgacgggcgtctcctcctcgcctgcaccggccgcaccgtctccgtcttcagcgcctc 7306 Query: 229 caccggcatgctggt 243 ||||||||||||||| Sbjct: 7307 caccggcatgctggt 7321 Score = 105 bits (53), Expect = 1e-19 Identities = 142/172 (82%), Gaps = 6/172 (3%) Strand = Plus / Plus Query: 245 tcggagctggaggggcacgagggggacgtcaccgccgtcgtcgtggtgccgccgcagggc 304 |||||||||||||||||||||||||||||||| || || || |||| |||||||| || Sbjct: 7407 tcggagctggaggggcacgagggggacgtcacggcggtggtggtggcgccgccgccggtg 7466 Query: 305 aacgccgcggcgaccgccaagctcgcgagccactgctggacggctgggctcgacggtttc 364 |||||| | || |||||||||||| ||||||||||||| ||||| ||||| || Sbjct: 7467 ------gcggcggcggcgaagctcgcgagctactgctggacggcggggcttgacgggttt 7520 Query: 365 ctcatctactgggacttcgccaccgccgagctggtgcggaaggtcaaggtcg 416 || | |||||||||||||| | || |||||||||||||||||| |||||| Sbjct: 7521 ctggtttactgggacttcgcggcggcggagctggtgcggaaggtccaggtcg 7572
>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167131 Score = 180 bits (91), Expect = 3e-42 Identities = 124/135 (91%) Strand = Plus / Plus Query: 109 cgccgtcgccgccatgatcaccggcggccagagctacgtctcggcgccgccggccttctc 168 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 152974 cgccgccgccgccatgatcaccggcggccagagctacgtctccgcgccgccggccttctc 153033 Query: 169 cgcggacggccgcttcctcctcgtctgctccggccgctccgtctccgtcttcagcacctc 228 || ||||| || ||||||||| |||| |||||||| ||||||||||||||||| |||| Sbjct: 153034 ggccgacgggcgtctcctcctcgcctgcaccggccgcaccgtctccgtcttcagcgcctc 153093 Query: 229 caccggcatgctggt 243 ||||||||||||||| Sbjct: 153094 caccggcatgctggt 153108 Score = 105 bits (53), Expect = 1e-19 Identities = 142/172 (82%), Gaps = 6/172 (3%) Strand = Plus / Plus Query: 245 tcggagctggaggggcacgagggggacgtcaccgccgtcgtcgtggtgccgccgcagggc 304 |||||||||||||||||||||||||||||||| || || || |||| |||||||| || Sbjct: 153194 tcggagctggaggggcacgagggggacgtcacggcggtggtggtggcgccgccgccggtg 153253 Query: 305 aacgccgcggcgaccgccaagctcgcgagccactgctggacggctgggctcgacggtttc 364 |||||| | || |||||||||||| ||||||||||||| ||||| ||||| || Sbjct: 153254 ------gcggcggcggcgaagctcgcgagctactgctggacggcggggcttgacgggttt 153307 Query: 365 ctcatctactgggacttcgccaccgccgagctggtgcggaaggtcaaggtcg 416 || | |||||||||||||| | || |||||||||||||||||| |||||| Sbjct: 153308 ctggtttactgggacttcgcggcggcggagctggtgcggaaggtccaggtcg 153359
>gb|AY943953.1| Streptomyces sp. FQ1 plasmid pFP1, complete sequence Length = 39360 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 157 gccggccttctccgcggacggccgctt 183 |||||||||| |||||||||||||||| Sbjct: 28331 gccggccttcgccgcggacggccgctt 28305
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 130 cggcggccagagctacgtctcggcgccgccggcc 163 ||||||| || ||| ||||||||||||||||||| Sbjct: 98016 cggcggctagggctgcgtctcggcgccgccggcc 98049
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 130 cggcggccagagctacgtctcggcgccgccggcc 163 ||||||| || ||| ||||||||||||||||||| Sbjct: 21060 cggcggctagggctgcgtctcggcgccgccggcc 21093
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 294 cgccgcagggcaacgccgcggc 315 |||||||||||||||||||||| Sbjct: 3569111 cgccgcagggcaacgccgcggc 3569090
>ref|XM_813478.1| Trypanosoma cruzi strain CL Brener ubiquitin hydrolase (Tc00.1047053507603.180) partial mRNA Length = 3402 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 gccgccgtcgccgccatgatc 127 ||||||||||||||||||||| Sbjct: 3321 gccgccgtcgccgccatgatc 3301
>ref|XM_815074.1| Trypanosoma cruzi strain CL Brener ubiquitin hydrolase (Tc00.1047053509429.250) partial mRNA Length = 3408 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 gccgccgtcgccgccatgatc 127 ||||||||||||||||||||| Sbjct: 3327 gccgccgtcgccgccatgatc 3307
>emb|Z25420.1|GDINCENPB G.domesticus class II INCENP protein mRNA, complete CDS Length = 4354 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 gcggacggccgcttcctcctc 190 ||||||||||||||||||||| Sbjct: 251 gcggacggccgcttcctcctc 231
>emb|Z25419.1|GDINCENPA G.domesticus class I INCENP protein mRNA, complete CDS Length = 4481 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 gcggacggccgcttcctcctc 190 ||||||||||||||||||||| Sbjct: 251 gcggacggccgcttcctcctc 231
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 cacctccaccggcatgctggt 243 ||||||||||||||||||||| Sbjct: 111687 cacctccaccggcatgctggt 111707
>ref|NM_205330.1| Gallus gallus inner centromere protein antigens 135/155kDa (INCENP), mRNA Length = 4481 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 gcggacggccgcttcctcctc 190 ||||||||||||||||||||| Sbjct: 251 gcggacggccgcttcctcctc 231
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 ggtgccgccgcagggcaacgccgcg 313 ||||||||||||||||||| ||||| Sbjct: 4909192 ggtgccgccgcagggcaacaccgcg 4909216
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 ggtgccgccgcagggcaacgccgcg 313 |||||||| |||||||||||||||| Sbjct: 2639296 ggtgccgctgcagggcaacgccgcg 2639320
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 gtggtgccgccgcagggcaac 307 ||||||||||||||||||||| Sbjct: 5887576 gtggtgccgccgcagggcaac 5887596 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 cggccttctccgcggacggc 178 |||||||||||||||||||| Sbjct: 4683028 cggccttctccgcggacggc 4683009 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ggccgccgtcgccgccatga 125 |||||||||||||||||||| Sbjct: 1644146 ggccgccgtcgccgccatga 1644165
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 ggtgccgccgcagggcaacgccgcg 313 ||||||||||||||||||| ||||| Sbjct: 4911946 ggtgccgccgcagggcaacaccgcg 4911970
>gb|AF016585.1|AF016585 Streptomyces caelestis cytochrome P-450 hydroxylase homolog (nidi) gene, partial cds; polyketide synthase modules 1 through 7 (nidA) genes, complete cds; and N-methyltransferase homolog gene, partial cds Length = 41097 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 gccaccgccgagctggtgcgg 403 ||||||||||||||||||||| Sbjct: 23298 gccaccgccgagctggtgcgg 23318
>gb|AC102303.10| Mus musculus chromosome 1, clone RP24-403I11, complete sequence Length = 162813 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 cactcatggtgattcccaac 446 |||||||||||||||||||| Sbjct: 140943 cactcatggtgattcccaac 140924
>ref|XM_472641.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2262 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cgccgccggccttctccgcg 172 |||||||||||||||||||| Sbjct: 2107 cgccgccggccttctccgcg 2088
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ggccgccgtcgccgccatga 125 |||||||||||||||||||| Sbjct: 4441503 ggccgccgtcgccgccatga 4441484
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 ccggccgccgtcgccgccat 123 |||||||||||||||||||| Sbjct: 4318305 ccggccgccgtcgccgccat 4318324
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 ccggccgccgtcgccgccat 123 |||||||||||||||||||| Sbjct: 3242624 ccggccgccgtcgccgccat 3242643
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 271 cgtcaccgccgtcgtcgtggtgccgccgcagg 302 |||| |||||||| ||| |||||||||||||| Sbjct: 81691 cgtcgccgccgtcttcggggtgccgccgcagg 81722
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 107 gccgccgtcgccgccatgatcacc 130 ||||||||||||||| |||||||| Sbjct: 98139 gccgccgtcgccgccgtgatcacc 98116
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 cgccgtcgccgccatgatcaccgg 132 ||||| |||||||||||||||||| Sbjct: 4325645 cgccgccgccgccatgatcaccgg 4325668
>ref|NM_172572.1| Mus musculus rhomboid 5 homolog 2 (Drosophila) (Rhbdf2), mRNA Length = 3856 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 cactgctggacggctgggct 354 |||||||||||||||||||| Sbjct: 88 cactgctggacggctgggct 69
>dbj|AB126084.1| Oryza sativa (japonica cultivar-group) 0sFRO1 mRNA for ferric reductase, complete cds Length = 2582 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cgccgccggccttctccgcg 172 |||||||||||||||||||| Sbjct: 2299 cgccgccggccttctccgcg 2280
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 ccggccgccgtcgccgccat 123 |||||||||||||||||||| Sbjct: 3288488 ccggccgccgtcgccgccat 3288507
>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence Length = 250948 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cgtcaccgccgtcgtcgtgg 290 |||||||||||||||||||| Sbjct: 52729 cgtcaccgccgtcgtcgtgg 52710
>gb|AF478128.1| Japanese encephalitis virus polyprotein gene, partial cds Length = 1730 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 ccgccaagctcgcgagccac 337 |||||||||||||||||||| Sbjct: 67 ccgccaagctcgcgagccac 48
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tcggcgccgccggccttctc 168 |||||||||||||||||||| Sbjct: 3944400 tcggcgccgccggccttctc 3944381
>dbj|AK028872.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732465I17 product:EPIDERMAL GROWTH FACTOR RECEPTOR-RELATED PROTEIN (FRAGMENT) homolog [Homo sapiens], full insert sequence Length = 3856 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 cactgctggacggctgggct 354 |||||||||||||||||||| Sbjct: 88 cactgctggacggctgggct 69
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 cggcgccgccggccttctccgcgg 173 ||||||||||||||||| |||||| Sbjct: 1211504 cggcgccgccggccttcaccgcgg 1211481
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cgccgccggccttctccgcg 172 |||||||||||||||||||| Sbjct: 22162131 cgccgccggccttctccgcg 22162112
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gccgccgtcgccgccatgat 126 |||||||||||||||||||| Sbjct: 6476027 gccgccgtcgccgccatgat 6476008
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ggccgccgtcgccgccatga 125 |||||||||||||||||||| Sbjct: 4441618 ggccgccgtcgccgccatga 4441599
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gcaacgccgcggcgaccgcc 322 |||||||||||||||||||| Sbjct: 12555264 gcaacgccgcggcgaccgcc 12555245
>gb|AF326498.1|AF326498 Zea mays small basic membrane integral protein ZmSIP1-2 mRNA, complete cds Length = 936 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ggacgtcaccgccgtcgtcg 287 |||||||||||||||||||| Sbjct: 181 ggacgtcaccgccgtcgtcg 162
>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0042J17, complete sequence Length = 171442 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ggccgccgtcgccgccatga 125 |||||||||||||||||||| Sbjct: 46795 ggccgccgtcgccgccatga 46776
>dbj|AB206041.1| Aeromonas hydrophila gene for hemolysin, complete cds, strain:AH201 Length = 1866 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ctgctggacggctgggctcg 356 |||||||||||||||||||| Sbjct: 805 ctgctggacggctgggctcg 824
>dbj|AP005545.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0638H11 Length = 162746 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gccgccgtcgccgccatgat 126 |||||||||||||||||||| Sbjct: 142971 gccgccgtcgccgccatgat 142952
>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0572D06 Length = 148920 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gcaacgccgcggcgaccgcc 322 |||||||||||||||||||| Sbjct: 59797 gcaacgccgcggcgaccgcc 59778
>emb|AJ338850.1|HSA338850 Homo sapiens genomic sequence surrounding NotI site, clone NR1-SB12R Length = 662 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 cggcgccgccggccttctcc 169 |||||||||||||||||||| Sbjct: 84 cggcgccgccggccttctcc 103
>dbj|AK070312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047G23, full insert sequence Length = 2582 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cgccgccggccttctccgcg 172 |||||||||||||||||||| Sbjct: 2299 cgccgccggccttctccgcg 2280
>dbj|AK067009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093I17, full insert sequence Length = 2628 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cgccgccggccttctccgcg 172 |||||||||||||||||||| Sbjct: 2189 cgccgccggccttctccgcg 2170
>gb|AY108278.1| Zea mays PCO119899 mRNA sequence Length = 1540 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ggacgtcaccgccgtcgtcg 287 |||||||||||||||||||| Sbjct: 171 ggacgtcaccgccgtcgtcg 152
>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from chromosome 4, complete sequence Length = 90825 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cgccgccggccttctccgcg 172 |||||||||||||||||||| Sbjct: 86637 cgccgccggccttctccgcg 86618
>emb|AL731593.2|OSJN00235 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08, complete sequence Length = 118959 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cgccgccggccttctccgcg 172 |||||||||||||||||||| Sbjct: 31992 cgccgccggccttctccgcg 31973
>emb|AL607039.25| Mouse DNA sequence from clone RP23-313J14 on chromosome 11, complete sequence Length = 147376 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 cactgctggacggctgggct 354 |||||||||||||||||||| Sbjct: 54506 cactgctggacggctgggct 54525
>gb|AY849939.1| Japanese encephalitis virus strain HW, complete genome Length = 10977 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 ccgccaagctcgcgagccac 337 |||||||||||||||||||| Sbjct: 453 ccgccaagctcgcgagccac 434 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,793,394 Number of Sequences: 3902068 Number of extensions: 2793394 Number of successful extensions: 75937 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73189 Number of HSP's gapped (non-prelim): 2748 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
