ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NID1_MOUSE (P10493) Nidogen-1 precursor (Entactin) 29 2.5
2CD5L_HUMAN (O43866) CD5 antigen-like precursor (SP-alpha) (CT-2)... 27 9.6

>NID1_MOUSE (P10493) Nidogen-1 precursor (Entactin)|
          Length = 1245

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 242 HLGLS-VDVPDPFRSSRRDHPDPSASERELHEGGE 343
           HLGL  V  P P  S RR +PDP    R L  G E
Sbjct: 301 HLGLEDVATPSPSHSPRRGYPDPHNVPRILSPGYE 335



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>CD5L_HUMAN (O43866) CD5 antigen-like precursor (SP-alpha) (CT-2)|
           (IgM-associated peptide)
          Length = 347

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 98  GARRIWVDAGEVKAGGEVRSLEKKKRSLYGF 6
           G  RIW+D   V+  GE +SLE+ +   +GF
Sbjct: 304 GVGRIWLD--NVRCSGEEQSLEQCQHRFWGF 332


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,322,009
Number of Sequences: 219361
Number of extensions: 505660
Number of successful extensions: 1800
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1800
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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