>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2|
           COP)
          Length = 871

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 45/78 (57%), Positives = 60/78 (76%)
 Frame = +2

Query: 242 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 421
           +PF  +EK AVLQEAR+F++  ++ RRC  ++TK+LYLLNQG+ F  +EATE FFA T+L
Sbjct: 17  NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTMEATEAFFAMTRL 76

Query: 422 FQSKDAGLRRMVYLMIRD 475
           FQS D  LRRM YL I++
Sbjct: 77  FQSNDQTLRRMCYLTIKE 94

>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2|
           COP)
          Length = 871

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 45/78 (57%), Positives = 59/78 (75%)
 Frame = +2

Query: 242 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 421
           +PF  +EK AVLQEAR+F++  ++ RRC  ++TK+LYLLNQG+ F   EATE FFA T+L
Sbjct: 17  NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEATEAFFAMTRL 76

Query: 422 FQSKDAGLRRMVYLMIRD 475
           FQS D  LRRM YL I++
Sbjct: 77  FQSNDQTLRRMCYLTIKE 94

>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)|
          Length = 874

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 44/78 (56%), Positives = 58/78 (74%)
 Frame = +2

Query: 242 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 421
           +PF  +EK AVLQEARVF++  ++ R+C  ++TK+LYL+NQG+     EATE FFA TKL
Sbjct: 17  NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76

Query: 422 FQSKDAGLRRMVYLMIRD 475
           FQS D  LRRM YL I++
Sbjct: 77  FQSNDPTLRRMCYLTIKE 94

>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)|
          Length = 874

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 44/78 (56%), Positives = 58/78 (74%)
 Frame = +2

Query: 242 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 421
           +PF  +EK AVLQEARVF++  ++ R+C  ++TK+LYL+NQG+     EATE FFA TKL
Sbjct: 17  NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76

Query: 422 FQSKDAGLRRMVYLMIRD 475
           FQS D  LRRM YL I++
Sbjct: 77  FQSNDPTLRRMCYLTIKE 94

>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)|
           (Gamma-COP)
          Length = 870

 Score = 89.0 bits (219), Expect = 6e-18
 Identities = 37/73 (50%), Positives = 58/73 (79%)
 Frame = +2

Query: 257 IEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKLFQSKD 436
           ++K +VLQEAR F++  ++AR+CC +++KL+Y++ QG++  + EATE FF  TKL+QSKD
Sbjct: 18  LDKTSVLQEARAFNETPINARKCCFILSKLIYIIQQGESIGRTEATEAFFGVTKLWQSKD 77

Query: 437 AGLRRMVYLMIRD 475
             LRRMVYL +++
Sbjct: 78  VSLRRMVYLAVKE 90

>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)|
           (Gamma-COP)
          Length = 905

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 30/78 (38%), Positives = 51/78 (65%)
 Frame = +2

Query: 242 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 421
           S F  + +  V Q+AR F+   +  R+  ++++K+ YL+  G+ F + +ATE+FF  TKL
Sbjct: 13  SIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEKQATELFFGITKL 72

Query: 422 FQSKDAGLRRMVYLMIRD 475
           FQ KD  LR+ VY++I++
Sbjct: 73  FQHKDPSLRQFVYIIIKE 90

>COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)|
          Length = 935

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 29/73 (39%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
 Frame = +2

Query: 260 EKGAVLQEA-RVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKLFQSKD 436
           +K  + Q+    F++  ++++RC  +I++LL LL QG+TF + EAT +FF+ +KLFQ ++
Sbjct: 19  DKMTIYQDCMNTFNESPVNSKRCRLLISRLLRLLAQGETFPQNEATALFFSISKLFQHQN 78

Query: 437 AGLRRMVYLMIRD 475
             LR+ VYL I++
Sbjct: 79  DPLRQAVYLAIKE 91

>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell|
           protein 0)
          Length = 532

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 51  SSLAKPRDKDSRELSRRPAPPPFSRHSGR 137
           SS   PR +DSR    RP PP   R  GR
Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275

>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0|
          Length = 532

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 51  SSLAKPRDKDSRELSRRPAPPPFSRHSGR 137
           SS   PR +DSR    RP PP   R  GR
Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275

>MTB1_BRUAB (P0C116) Modification methylase BabI (EC 2.1.1.72)|
           (Adenine-specific methyltransferase BabI) (M.BabI)
           (M.CcrMI)
          Length = 377

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 325 ASPRIKLRVVEDAGLLQDGTLLDAEERR 242
           A PR+    V +AGLL+ GT+L  E RR
Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311

>MTB1_BRUA2 (Q2YMK2) Modification methylase BabI (EC 2.1.1.72)|
           (Adenine-specific methyltransferase BabI) (M.BabI)
           (M.CcrMI)
          Length = 377

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 325 ASPRIKLRVVEDAGLLQDGTLLDAEERR 242
           A PR+    V +AGLL+ GT+L  E RR
Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311

>MUTS_NEIMB (Q9JX94) DNA mismatch repair protein mutS|
          Length = 864

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 409 SEEYLCGLY-LGKGVTLVEQI*KLGDHLAASPRIKLRVVEDAGLLQDGTLLDAEE 248
           +E+YL  L  LGK V + EQ+ ++G       R  +R+V   G L D  LL+ +E
Sbjct: 72  AEQYLARLVKLGKSVAICEQVGEVGAGKGPVERKVVRIV-TPGTLTDSALLEDKE 125

>MUTS_NEIMA (Q9JWT7) DNA mismatch repair protein mutS|
          Length = 864

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 409 SEEYLCGLY-LGKGVTLVEQI*KLGDHLAASPRIKLRVVEDAGLLQDGTLLDAEE 248
           +E+YL  L  LGK V + EQ+ ++G       R  +R+V   G L D  LL+ +E
Sbjct: 72  AEQYLARLVKLGKSVAICEQVGEVGAGKGPVERKVVRIV-TPGTLTDSALLEDKE 125

>MUTS_NEIG1 (Q5F5J4) DNA mismatch repair protein mutS|
          Length = 864

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 409 SEEYLCGLY-LGKGVTLVEQI*KLGDHLAASPRIKLRVVEDAGLLQDGTLLDAEE 248
           +E+YL  L  LGK V + EQ+ ++G       R  +R+V   G L D  LL+ +E
Sbjct: 72  AEQYLARLVKLGKSVAICEQVGEVGAGKGPVERKVVRIV-TPGTLTDSALLEDKE 125

>ST32C_HUMAN (Q86UX6) Serine/threonine-protein kinase 32C (EC 2.7.11.1) (PKE)|
           (YANK3)
          Length = 486

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 75  KDSRELSRRPAPPPFSRHSGRPGRTIRARIAPPQQGP 185
           K S++L R P P P SR +  P      R A P  GP
Sbjct: 442 KRSQDLPREPLPAPESRDAAEPVEDEAERSALPMCGP 478


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,139,858
Number of Sequences: 219361
Number of extensions: 884173
Number of successful extensions: 3032
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3017
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)