ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29g04 |
|---|---|
| Clone Library Name | barley_pub |
>PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (EC 2.7.11.1)| (Phytosulfokine LRR receptor kinase) Length = 1008 Score = 47.0 bits (110), Expect = 2e-05 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +1 Query: 202 CHPDDLRALRAFAGNLTAGGDILLRAAWSGRGGSCCAWEGVGCDGVR-GRVTKLRLPGRG 378 CHP DL ALR F +L D + S CC W G+ C+ GRV +L L + Sbjct: 31 CHPHDLEALRDFIAHLEPKPDGWIN---SSSSTDCCNWTGITCNSNNTGRVIRLELGNKK 87 Query: 379 LAGPFPGDALAGLPRLAELDLSR 447 L+G ++L L + L+LSR Sbjct: 88 LSGKL-SESLGKLDEIRVLNLSR 109
>PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor| (Polygalacturonase-inhibiting protein) (Floral organ regulator 1) Length = 332 Score = 42.0 bits (97), Expect = 8e-04 Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Frame = +1 Query: 187 AGAAACHPDDLRALRAFAGNLTAGGDILLRAAWSGRGGSCCAWEGVGCDGVRGRVTKLRL 366 A A C P D +AL +L G+ + WS CC W+ V CD GRV + + Sbjct: 22 ARAVRCPPSDKQALMRVKQSL---GNPATLSTWSLASADCCEWDHVRCDEA-GRVNNVFI 77 Query: 367 PG-RGLAGPFPGDALAGLPRLAELDLSR 447 G + G P A+AGL L L L R Sbjct: 78 DGANDVRGQIP-SAVAGLTALMSLSLFR 104
>DR100_ARATH (Q00874) DNA-damage-repair/toleration protein DRT100 precursor| Length = 372 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/57 (36%), Positives = 28/57 (49%) Frame = +1 Query: 202 CHPDDLRALRAFAGNLTAGGDILLRAAWSGRGGSCCAWEGVGCDGVRGRVTKLRLPG 372 C P D AL AF +L+ ++ + WS C W G+ CD GRVT + L G Sbjct: 27 CSPKDQTALNAFKSSLSEP-NLGIFNTWSENTDCCKEWYGISCDPDSGRVTDISLRG 82
>PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor| (Polygalacturonase-inhibiting protein) Length = 330 Score = 38.1 bits (87), Expect = 0.011 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Frame = +1 Query: 202 CHPDDLRALRAFAGNLTAGGDILLRAAWSGRGGSCCAWEGVGCDGVRGRVTKLRLPGRGL 381 C+PDD + L A GD + A+W CC W V CD R+ L + + Sbjct: 27 CNPDDKKVLLQIK---KAFGDPYVLASWKS-DTDCCDWYCVTCDSTTNRINSLTIFAGQV 82 Query: 382 AGPFPGDALAG-LPRLAELDLSR 447 +G P AL G LP L L+ + Sbjct: 83 SGQIP--ALVGDLPYLETLEFHK 103
>PSKR_DAUCA (Q8LPB4) Phytosulfokine receptor precursor (EC 2.7.11.1)| (Phytosulfokine LRR receptor kinase) Length = 1021 Score = 37.7 bits (86), Expect = 0.014 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Frame = +1 Query: 202 CHPDDLRALRAFAGNLTAGGDILLRAAWSGRGGSCCAWEGVGC--------DGVR--GRV 351 C+ +DL+AL F L + D S +CC W G+ C D V GRV Sbjct: 29 CNSNDLKALEGFMRGLESSIDGWKWNESSSFSSNCCDWVGISCKSSVSLGLDDVNESGRV 88 Query: 352 TKLRLPGRGLAGPFPGDALAGLPRLAELDLS 444 +L L R L+G +++A L +L L+L+ Sbjct: 89 VELELGRRKLSGKL-SESVAKLDQLKVLNLT 118
>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau| kinase) Length = 1321 Score = 35.4 bits (80), Expect = 0.072 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 1/81 (1%) Frame = -1 Query: 386 PASPRPGSRSLVXXXXXXXXXXXXQAQHEPPRPDHAARRRMSPPAVRFPAKAR-SARRSS 210 P SPR + + ++ E P P H AR + PP PA+A+ S Sbjct: 1230 PRSPRLPASTSAARNASASPRSQSLSRRESPSPSHQARPGVPPPRGVPPARAQPDGTPSP 1289 Query: 209 GWHAAAPAGKRSEDRVRKRGR 147 G P GK R +GR Sbjct: 1290 GGSKKGPRGKLQAQRATTKGR 1310
>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)| Length = 924 Score = 35.0 bits (79), Expect = 0.093 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = +1 Query: 280 AWSGRGGSCCAWEGVGCDGVRGR--VTKLRLPGRGLAGPFPGDALAGLPRLAELDLS 444 +WSG W+GV CDG G +TKL L L G P ++ + +L L+LS Sbjct: 382 SWSGDPCMLFPWKGVACDGSNGSSVITKLDLSSSNLKGTIP-SSVTEMTKLQILNLS 437
>BRL1_ARATH (Q9ZWC8) Serine/threonine-protein kinase BRI1-like 1 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1) Length = 1166 Score = 33.5 bits (75), Expect = 0.27 Identities = 22/52 (42%), Positives = 24/52 (46%) Frame = +1 Query: 286 SGRGGSCCAWEGVGCDGVRGRVTKLRLPGRGLAGPFPGDALAGLPRLAELDL 441 SGRG C+W GV C GR+ L L GL G L LP L L L Sbjct: 61 SGRGS--CSWRGVSCSD-DGRIVGLDLRNSGLTGTLNLVNLTALPNLQNLYL 109
>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)| Length = 999 Score = 31.2 bits (69), Expect = 1.3 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +1 Query: 277 AAWSGRGG-SCCAWEGVGCDGVRGRVTKLRLPGRGLAGPFPGDALAGLPRLAELDL 441 ++WS + C W GV CD V + L L GPFP L LP L L L Sbjct: 43 SSWSDNNDVTPCKWLGVSCDAT-SNVVSVDLSSFMLVGPFP-SILCHLPSLHSLSL 96
>PPDK_FLABR (Q39734) Pyruvate, phosphate dikinase, chloroplast precursor (EC| 2.7.9.1) (Pyruvate, orthophosphate dikinase) (Cold-sensitive pyruvate, orthophosphate dikinase) Length = 955 Score = 31.2 bits (69), Expect = 1.3 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +1 Query: 208 PDDLRALRAFAGNLTAGGDILLRAAWSGRG-GSCCAWEGVGCDGVR 342 P+D+ + A AG LTA G + AA RG G CC GC +R Sbjct: 515 PEDVGGMHAAAGILTARGGMTSHAAVVARGWGKCCV---SGCADIR 557
>PPDK_FLATR (P22221) Pyruvate, phosphate dikinase, chloroplast precursor (EC| 2.7.9.1) (Pyruvate, orthophosphate dikinase) Length = 953 Score = 31.2 bits (69), Expect = 1.3 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +1 Query: 208 PDDLRALRAFAGNLTAGGDILLRAAWSGRG-GSCCAWEGVGCDGVR 342 P+D+ + A AG LTA G + AA RG G CC GC +R Sbjct: 513 PEDVGGMHAAAGILTARGGMTSHAAVVARGWGKCCV---SGCADIR 555
>PPDK_FLAPR (Q42736) Pyruvate, phosphate dikinase, chloroplast precursor (EC| 2.7.9.1) (Pyruvate, orthophosphate dikinase) Length = 956 Score = 31.2 bits (69), Expect = 1.3 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +1 Query: 208 PDDLRALRAFAGNLTAGGDILLRAAWSGRG-GSCCAWEGVGCDGVR 342 P+D+ + A AG LTA G + AA RG G CC GC +R Sbjct: 516 PEDVGGMHAAAGILTARGGMTSHAAVVARGWGKCCV---SGCADIR 558
>PPDK_FLABI (Q39735) Pyruvate, phosphate dikinase, chloroplast precursor (EC| 2.7.9.1) (Pyruvate, orthophosphate dikinase) (Cold-sensitive pyruvate, orthophosphate dikinase) Length = 953 Score = 31.2 bits (69), Expect = 1.3 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +1 Query: 208 PDDLRALRAFAGNLTAGGDILLRAAWSGRG-GSCCAWEGVGCDGVR 342 P+D+ + A AG LTA G + AA RG G CC GC +R Sbjct: 513 PEDVGGMHAAAGILTARGGMTSHAAVVARGWGKCCV---SGCADIR 555
>RPK1_IPONI (P93194) Receptor-like protein kinase precursor (EC 2.7.11.1)| Length = 1109 Score = 31.2 bits (69), Expect = 1.3 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = +1 Query: 280 AWSGRGGSCCAWEGVGCDGVRGRVTKLRLPGRGLAGPFPGDALAGLPRLAELDLS 444 +W+ + C+W GV CD R V L L G++G F G ++ L L ++ LS Sbjct: 48 SWNASDSTPCSWLGVECDR-RQFVDTLNLSSYGISGEF-GPEISHLKHLKKVVLS 100
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 8/65 (12%) Frame = -1 Query: 392 KGPASPRPGSRSLVXXXXXXXXXXXXQA--------QHEPPRPDHAARRRMSPPAVRFPA 237 +GP P+PGSR A +PP+P + PPA PA Sbjct: 266 RGPGGPQPGSRQAETARATSVPGPAQAAAPPEVGRVSPQPPQPTKPSTAEPRPPAGEAPA 325 Query: 236 KARSA 222 K+ +A Sbjct: 326 KSATA 330
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/32 (53%), Positives = 22/32 (68%) Frame = +1 Query: 325 GCDGVRGRVTKLRLPGRGLAGPFPGDALAGLP 420 G DG+ GR ++ LP G+ GP PGD+L GLP Sbjct: 471 GLDGLPGRKGEMGLP--GVRGP-PGDSLNGLP 499
>BRL3_ARATH (Q9LJF3) Serine/threonine-protein kinase BRI1-like 3 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 3) Length = 1164 Score = 30.8 bits (68), Expect = 1.8 Identities = 20/51 (39%), Positives = 21/51 (41%) Frame = +1 Query: 289 GRGGSCCAWEGVGCDGVRGRVTKLRLPGRGLAGPFPGDALAGLPRLAELDL 441 G G C W GV C GRV L L GL G + L L L L L Sbjct: 59 GSGRDPCTWRGVSCSS-DGRVIGLDLRNGGLTGTLNLNNLTALSNLRSLYL 108
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 30.0 bits (66), Expect = 3.0 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = -1 Query: 299 PPRPDHAARRRMSPPAVRFPAKARSARRSSGWHAAAPAGKRSEDRVRKRGRRQH 138 PPR RR + PP + + R RRS +P +RS R GRR+H Sbjct: 246 PPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS----RSPGRRRH 295
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 30.0 bits (66), Expect = 3.0 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = -1 Query: 299 PPRPDHAARRRMSPPAVRFPAKARSARRSSGWHAAAPAGKRSEDRVRKRGRRQH 138 PPR RR + PP + + R RRS +P +RS R GRR+H Sbjct: 246 PPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS----RSPGRRRH 295
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 30.0 bits (66), Expect = 3.0 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = -1 Query: 299 PPRPDHAARRRMSPPAVRFPAKARSARRSSGWHAAAPAGKRSEDRVRKRGRRQH 138 PPR RR + PP + + R RRS +P +RS R GRR+H Sbjct: 246 PPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS----RSPGRRRH 295
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 30.0 bits (66), Expect = 3.0 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = -1 Query: 299 PPRPDHAARRRMSPPAVRFPAKARSARRSSGWHAAAPAGKRSEDRVRKRGRRQH 138 PPR RR + PP + + R RRS +P +RS R GRR+H Sbjct: 246 PPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS----RSPGRRRH 295
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 30.0 bits (66), Expect = 3.0 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = -1 Query: 299 PPRPDHAARRRMSPPAVRFPAKARSARRSSGWHAAAPAGKRSEDRVRKRGRRQH 138 PPR RR + PP + + R RRS +P +RS R GRR+H Sbjct: 246 PPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS----RSPGRRRH 295
>ECM2_HUMAN (O94769) Extracellular matrix protein 2 precursor (Matrix| glycoprotein SC1/ECM2) Length = 699 Score = 30.0 bits (66), Expect = 3.0 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +1 Query: 346 RVTKLRLPGRGLAGPFPGDALAGLPRLAELDLSR 447 ++T L L G +A P +A GLP L LDLS+ Sbjct: 344 QITSLELTGNSIAS-IPDEAFNGLPNLERLDLSK 376
>Y702_ENCCU (Q8SV56) Hypothetical protein ECU07_0020| Length = 101 Score = 30.0 bits (66), Expect = 3.0 Identities = 19/61 (31%), Positives = 22/61 (36%) Frame = +1 Query: 217 LRALRAFAGNLTAGGDILLRAAWSGRGGSCCAWEGVGCDGVRGRVTKLRLPGRGLAGPFP 396 L L A AG D+L + G C W G G + LPG G G P Sbjct: 22 LVVLATLAAGFVAGSDVLRCRGFGPATGDVCLWVGAG-------FWRCPLPGGGADGQGP 74 Query: 397 G 399 G Sbjct: 75 G 75
>CDT1_HUMAN (Q9H211) DNA replication factor Cdt1 (Double parked homolog) (DUP)| Length = 546 Score = 29.6 bits (65), Expect = 3.9 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Frame = -1 Query: 299 PPR--PDHAARRRMSP--PAVRFPAKARSARRSSGWHAAAPAGKRSEDRVRKRGR 147 PPR P A R SP PA+R PA A S R AAP ++ R+R R Sbjct: 17 PPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLR 71
>KV3G_MOUSE (P01659) Ig kappa chain V-III region TEPC 124| Length = 112 Score = 29.6 bits (65), Expect = 3.9 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -3 Query: 123 SLAIARGQRETIWGGGRSGVEWRGE*RLEWFE 28 SLA++ GQR TI V W G ++W++ Sbjct: 10 SLAVSLGQRATISCRASZSVNWYGNSFMZWYZ 41
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 29.6 bits (65), Expect = 3.9 Identities = 17/32 (53%), Positives = 19/32 (59%) Frame = +1 Query: 325 GCDGVRGRVTKLRLPGRGLAGPFPGDALAGLP 420 G DG RGR L +P GL GP PGD+ G P Sbjct: 665 GIDGKRGRQGSLGIP--GLQGP-PGDSFPGQP 693
>NORK_MEDTR (Q8L4H4) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does| not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) Length = 925 Score = 29.6 bits (65), Expect = 3.9 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = +1 Query: 280 AWSGRGGSCCAWEGVGCDGVRGR--VTKLRLPGRGLAGPFP 396 +WSG W+G+ CD G +TKL L L G P Sbjct: 384 SWSGDPCMIFPWKGITCDDSTGSSIITKLDLSSNNLKGAIP 424
>PTF1A_MOUSE (Q9QX98) Pancreas transcription factor 1 subunit alpha| (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48) Length = 324 Score = 28.9 bits (63), Expect = 6.7 Identities = 21/63 (33%), Positives = 28/63 (44%) Frame = +1 Query: 262 DILLRAAWSGRGGSCCAWEGVGCDGVRGRVTKLRLPGRGLAGPFPGDALAGLPRLAELDL 441 D+ LR + +G G +G D + K+ + RG P P D GLP LA L Sbjct: 219 DLPLRGSGAGGCGGPGGSRHLGEDSPGNQAQKVIICHRGTRSPSPSDPDYGLPPLAGHSL 278 Query: 442 SRT 450 S T Sbjct: 279 SWT 281
>VANG1_HUMAN (Q8TAA9) Vang-like protein 1 (Van Gogh-like protein 1) (Strabismus| 2) (Loop-tail protein 2 homolog) (LPP2) Length = 524 Score = 28.9 bits (63), Expect = 6.7 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 411 GKGVSREGTREPPAGEPKLGDAST 340 G+G + T +PP GEP LG+ ST Sbjct: 39 GRGSEKSVTIQPPTGEPLLGNDST 62
>ROUGH_DROVI (P18264) Homeobox protein rough| Length = 339 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Frame = -1 Query: 296 PRPDHAARRRMS----PPAVRFPAKARSARRSSGWHAAAPAGKRSEDRVRKR 153 P PD++A ++ PPA+ FPA + ++G+ A +R E R R++ Sbjct: 116 PTPDYSAYGAIANATLPPALSFPAFSADPHINAGFSAFLARRRRKEGRQRRQ 167
>PTF1A_RAT (Q64305) Pancreas transcription factor 1 subunit alpha| (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48) Length = 326 Score = 28.5 bits (62), Expect = 8.7 Identities = 20/61 (32%), Positives = 27/61 (44%) Frame = +1 Query: 262 DILLRAAWSGRGGSCCAWEGVGCDGVRGRVTKLRLPGRGLAGPFPGDALAGLPRLAELDL 441 D+ LR + +G G +G D + K+ + RG P P D GLP LA L Sbjct: 221 DLPLRGSGTGGCGGPGGSRHLGGDSPGNQAQKVIICHRGTRSPSPSDPDYGLPPLAGHSL 280 Query: 442 S 444 S Sbjct: 281 S 281
>PTF1A_HUMAN (Q7RTS3) Pancreas transcription factor 1 subunit alpha| (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48) Length = 328 Score = 28.5 bits (62), Expect = 8.7 Identities = 21/63 (33%), Positives = 27/63 (42%) Frame = +1 Query: 262 DILLRAAWSGRGGSCCAWEGVGCDGVRGRVTKLRLPGRGLAGPFPGDALAGLPRLAELDL 441 D+ LR +G G +G D + K+ + RG P P D GLP LA L Sbjct: 222 DLPLRGGGAGGCGGPGGGGRLGGDSPGSQAQKVIICHRGTRSPSPSDPDYGLPPLAGHSL 281 Query: 442 SRT 450 S T Sbjct: 282 SWT 284 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,931,910 Number of Sequences: 219361 Number of extensions: 632087 Number of successful extensions: 2635 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2516 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2626 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
