ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186147.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.006
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
3dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
4dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
5emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4,... 46 0.10
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
7emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 46 0.10
8emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 46 0.10
9dbj|AK067558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
10emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4,... 44 0.40
11ref|NM_112940.1| Arabidopsis thaliana tetraacyldisaccharide 4'-k... 42 1.6
12gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 42 1.6
13emb|BX823417.1|CNS0A6KP Arabidopsis thaliana Full-length cDNA Co... 42 1.6
14gb|AY085541.1| Arabidopsis thaliana clone 156552 mRNA, complete ... 42 1.6
15gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.6
16dbj|AP000410.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.6
17ref|XM_464359.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
18gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosom... 40 6.2
19emb|Z46828.1|CER03D7 Caenorhabditis elegans Cosmid R03D7, comple... 40 6.2
20gb|AC034122.12| Mus musculus chromosome 1, clone RP23-169C19, co... 40 6.2
21emb|AL606508.12| Mouse DNA sequence from clone RP23-180B9 on chr... 40 6.2
22gb|AY968589.1| Triticum aestivum ice recrystallization inhibitio... 40 6.2
23gb|AC087721.4| Homo sapiens chromosome 15 clone RP11-16O9 map 15... 40 6.2
24dbj|AK165801.1| Mus musculus 8 days neonate male testis cDNA, RI... 40 6.2
25gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.2
26gb|AY029542.1| Bulinus obtusispira 16S ribosomal RNA gene, parti... 40 6.2
27dbj|AK077103.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.2
28ref|NM_063957.1| Caenorhabditis elegans NanOS related family mem... 40 6.2
29dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
30gb|AC019046.4|AC019046 Homo sapiens BAC clone RP11-71D23 from 2,... 40 6.2
31dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.2
32gb|AC010207.18| Homo sapiens 3 BAC RP11-375I20 (Roswell Park Can... 40 6.2
33dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
34dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.2
35gb|AC117749.6| Mus musculus chromosome 1, clone RP24-319I19, com... 40 6.2
36gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 6.2
37dbj|AP000158.1| Homo sapiens genomic DNA, chromosome 21q22.2, DS... 40 6.2
38dbj|AP000014.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrom... 40 6.2
39dbj|AP001433.1| Homo sapiens genomic DNA, chromosome 21q22.2, cl... 40 6.2 
>ref|NM_186147.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3033

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 193 gcggcggcgtgccacccggacgacctccgcgcgctgcgggc 233
           |||||| | ||||||||||| ||||||| ||||||||||||
Sbjct: 82  gcggcgccatgccacccggaagacctcctcgcgctgcgggc 122
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 193    gcggcggcgtgccacccggacgacctccgcgcgctgcgggc 233
              |||||| | ||||||||||| ||||||| ||||||||||||
Sbjct: 424178 gcggcgccatgccacccggaagacctcctcgcgctgcgggc 424218
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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 193   gcggcggcgtgccacccggacgacctccgcgcgctgcgggc 233
             |||||| | ||||||||||| ||||||| ||||||||||||
Sbjct: 26342 gcggcgccatgccacccggaagacctcctcgcgctgcgggc 26382
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>dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O10, full
           insert sequence
          Length = 3392

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 193 gcggcggcgtgccacccggacgacctccgcgcgctgcgggc 233
           |||||| | ||||||||||| ||||||| ||||||||||||
Sbjct: 208 gcggcgccatgccacccggaagacctcctcgcgctgcgggc 248
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>emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032F06,
             complete sequence
          Length = 148023

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 220   cgcgcgctgcgggccttcgccgg 242
             |||||||||||||||||||||||
Sbjct: 57034 cgcgcgctgcgggccttcgccgg 57012
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 220      cgcgcgctgcgggccttcgccgg 242
                |||||||||||||||||||||||
Sbjct: 34850921 cgcgcgctgcgggccttcgccgg 34850899



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 304     tgctgcgcctgggaaggcgtgggctgcgacggcg 337
               ||||||| |||||||||||||| ||||| |||||
Sbjct: 1147931 tgctgcggctgggaaggcgtggtctgcggcggcg 1147964
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>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete
             sequence
          Length = 115564

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 220   cgcgcgctgcgggccttcgccgg 242
             |||||||||||||||||||||||
Sbjct: 30532 cgcgcgctgcgggccttcgccgg 30510
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>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete
              sequence
          Length = 110682

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 220    cgcgcgctgcgggccttcgccgg 242
              |||||||||||||||||||||||
Sbjct: 104608 cgcgcgctgcgggccttcgccgg 104586
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>dbj|AK067558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112K04, full
           insert sequence
          Length = 2553

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 304 tgctgcgcctgggaaggcgtgggctgcgacggcg 337
           ||||||| |||||||||||||| ||||| |||||
Sbjct: 204 tgctgcggctgggaaggcgtggtctgcggcggcg 237
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>emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020P07,
             complete sequence
          Length = 167895

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 304   tgctgcgcctgggaaggcgtgggctgcgacggcg 337
             ||||||| |||||||||||||| ||||| |||||
Sbjct: 90313 tgctgcggctgggaaggcgtggtctgcggcggcg 90346
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>ref|NM_112940.1| Arabidopsis thaliana tetraacyldisaccharide 4'-kinase AT3G20480
           mRNA, complete cds
          Length = 1281

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 120 ggctgaatccatggggaaatg 140
           |||||||||||||||||||||
Sbjct: 592 ggctgaatccatggggaaatg 612
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 434     tcgacctcagccgcacgctct 454
               |||||||||||||||||||||
Sbjct: 1733364 tcgacctcagccgcacgctct 1733384
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>emb|BX823417.1|CNS0A6KP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS36ZD07 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1411

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 120 ggctgaatccatggggaaatg 140
           |||||||||||||||||||||
Sbjct: 716 ggctgaatccatggggaaatg 736
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>gb|AY085541.1| Arabidopsis thaliana clone 156552 mRNA, complete sequence
          Length = 1281

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 120 ggctgaatccatggggaaatg 140
           |||||||||||||||||||||
Sbjct: 592 ggctgaatccatggggaaatg 612
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 221     gcgcgctgcgggccttcgccg 241
               |||||||||||||||||||||
Sbjct: 4476772 gcgcgctgcgggccttcgccg 4476752
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>dbj|AP000410.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K10D20
          Length = 55161

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 120  ggctgaatccatggggaaatg 140
            |||||||||||||||||||||
Sbjct: 1681 ggctgaatccatggggaaatg 1661
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>ref|XM_464359.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1334

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 181 ttgccggccggagcggcggc 200
           ||||||||||||||||||||
Sbjct: 140 ttgccggccggagcggcggc 159
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>gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosome 18, complete
             sequence
          Length = 181811

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    attgctgctgcttctgcttc 30
             ||||||||||||||||||||
Sbjct: 43600 attgctgctgcttctgcttc 43581
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>emb|Z46828.1|CER03D7 Caenorhabditis elegans Cosmid R03D7, complete sequence
          Length = 43461

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ttgctgctgcttctgcttcg 31
             ||||||||||||||||||||
Sbjct: 27737 ttgctgctgcttctgcttcg 27718
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>gb|AC034122.12| Mus musculus chromosome 1, clone RP23-169C19, complete sequence
          Length = 208469

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   cgcccttgccgggctcccgc 421
             ||||||||||||||||||||
Sbjct: 84648 cgcccttgccgggctcccgc 84667
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>emb|AL606508.12| Mouse DNA sequence from clone RP23-180B9 on chromosome 11 Contains the 3'
              end of a novel gene and a CpG island, complete sequence
          Length = 189315

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    ccttctgcccctcttcctga 163
              ||||||||||||||||||||
Sbjct: 141594 ccttctgcccctcttcctga 141613
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>gb|AY968589.1| Triticum aestivum ice recrystallization inhibition protein 2
           precursor, mRNA, complete cds
          Length = 1596

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 295 ggcggctcgtgctgcgcctgggaaggcgtgggctgc 330
           |||| |||||||||||  |||||||| |||||||||
Sbjct: 169 ggcgcctcgtgctgcgattgggaaggtgtgggctgc 204
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>gb|AC087721.4| Homo sapiens chromosome 15 clone RP11-16O9 map 15q15, complete sequence
          Length = 196603

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 398    gagacgcccttgccgggctcccgc 421
              ||||||||||||||||| ||||||
Sbjct: 189996 gagacgcccttgccgggttcccgc 189973
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>dbj|AK165801.1| Mus musculus 8 days neonate male testis cDNA, RIKEN full-length
           enriched library, clone:G630083P15 product:Hypothetical
           calponin-homology domain (Hypothetical protein), full
           insert sequence
          Length = 1486

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 cgcccttgccgggctcccgc 421
           ||||||||||||||||||||
Sbjct: 28  cgcccttgccgggctcccgc 9
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 285     gtccggtcgcggcggctcgt 304
               ||||||||||||||||||||
Sbjct: 1596715 gtccggtcgcggcggctcgt 1596734
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>gb|AY029542.1| Bulinus obtusispira 16S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 388

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 124 gaatccatggggaaatgctg 143
           ||||||||||||||||||||
Sbjct: 94  gaatccatggggaaatgctg 113
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>dbj|AK077103.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4933405K18 product:hypothetical
           Calponin-homology domain, CH-domain/HMG-box structure
           containing protein, full insert sequence
          Length = 1556

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 cgcccttgccgggctcccgc 421
           ||||||||||||||||||||
Sbjct: 28  cgcccttgccgggctcccgc 9
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>ref|NM_063957.1| Caenorhabditis elegans NanOS related family member (nos-1) (nos-1)
           mRNA, complete cds
          Length = 936

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 12  ttgctgctgcttctgcttcg 31
           ||||||||||||||||||||
Sbjct: 714 ttgctgctgcttctgcttcg 733
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 181     ttgccggccggagcggcggc 200
               ||||||||||||||||||||
Sbjct: 4717835 ttgccggccggagcggcggc 4717854
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>gb|AC019046.4|AC019046 Homo sapiens BAC clone RP11-71D23 from 2, complete sequence
          Length = 177703

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     attgctgctgcttctgcttc 30
              ||||||||||||||||||||
Sbjct: 152694 attgctgctgcttctgcttc 152675
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 189     cggagcggcggcgtgccacc 208
               ||||||||||||||||||||
Sbjct: 5110316 cggagcggcggcgtgccacc 5110297
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>gb|AC010207.18| Homo sapiens 3 BAC RP11-375I20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184582

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    gccttctgcccctcttcctg 162
              ||||||||||||||||||||
Sbjct: 144509 gccttctgcccctcttcctg 144490
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>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1572_F02
          Length = 93626

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   ttgccggccggagcggcggc 200
             ||||||||||||||||||||
Sbjct: 89907 ttgccggccggagcggcggc 89926
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>dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, section 74/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   tctgcccctcttcctgaccc 166
             ||||||||||||||||||||
Sbjct: 86592 tctgcccctcttcctgaccc 86573
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>gb|AC117749.6| Mus musculus chromosome 1, clone RP24-319I19, complete sequence
          Length = 174793

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   cgcccttgccgggctcccgc 421
             ||||||||||||||||||||
Sbjct: 20883 cgcccttgccgggctcccgc 20902
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 319     ggcgtgggctgcgacggcgt 338
               ||||||||||||||||||||
Sbjct: 1461796 ggcgtgggctgcgacggcgt 1461815
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>dbj|AP000158.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 10/16, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   tctgcccctcttcctgaccc 166
             ||||||||||||||||||||
Sbjct: 34009 tctgcccctcttcctgaccc 33990
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>dbj|AP000014.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 7/13
          Length = 302521

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    tctgcccctcttcctgaccc 166
              ||||||||||||||||||||
Sbjct: 270926 tctgcccctcttcctgaccc 270907
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>dbj|AP001433.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:T2062, LB7T-ERG
             region, complete sequence
          Length = 61169

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   tctgcccctcttcctgaccc 166
             ||||||||||||||||||||
Sbjct: 37263 tctgcccctcttcctgaccc 37244


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,830,870
Number of Sequences: 3902068
Number of extensions: 2830870
Number of successful extensions: 72300
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71520
Number of HSP's gapped (non-prelim): 780
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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