ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY579884.1| Hordeum vulgare AML6 mRNA, complete cds 813 0.0
2dbj|AB244278.1| Oryza sativa (japonica cultivar-group) OML3 mRNA... 129 8e-27
3dbj|AK121634.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 8e-27
4dbj|AK120322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 8e-27
5dbj|AK074004.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 8e-27
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
7gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome... 70 7e-09
8gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome... 70 7e-09
9gb|AY579885.1| Sorghum bicolor AML1 mRNA, complete cds 66 1e-07
10ref|NM_142205.2| Drosophila melanogaster CG6130-RA (CG6130), mRNA 46 0.095
11gb|AY051426.1| Drosophila melanogaster GH10346 full length cDNA 46 0.095
12gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, r... 46 0.095
13gb|AC007769.3|AC007769 Drosophila melanogaster, chromosome 3R, r... 46 0.095
14gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46... 46 0.095
15ref|NM_179270.1| Arabidopsis thaliana DNA binding AT1G06230 tran... 44 0.38
16ref|NM_100505.2| Arabidopsis thaliana DNA binding AT1G06230 tran... 44 0.38
17emb|CR731558.2|CNS0GREZ Tetraodon nigroviridis full-length cDNA 44 0.38
18emb|CR728100.2|CNS0GOQY Tetraodon nigroviridis full-length cDNA 44 0.38
19emb|CR683307.2|CNS0FQ6V Tetraodon nigroviridis full-length cDNA 44 0.38
20emb|BX816821.1|CNS0AEK3 Arabidopsis thaliana Full-length cDNA Co... 44 0.38
21gb|AC025290.3|F9P14 Sequence of BAC F9P14 from Arabidopsis thali... 44 0.38
22gb|CP000107.1| Ehrlichia canis str. Jake, complete genome 42 1.5
23emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chr... 42 1.5
24dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 42 1.5
25ref|XM_514528.1| PREDICTED: Pan troglodytes sorting nexin 5 (LOC... 40 5.9
26gb|AY579890.1| Hordeum vulgare AML6 gene, partial cds 40 5.9
27gb|BT012471.1| Drosophila melanogaster RE24802 full insert cDNA 40 5.9
28gb|AC164086.3| Mus musculus BAC clone RP23-25E6 from chromosome ... 40 5.9
29gb|BT011364.1| Drosophila melanogaster RE66627 full insert cDNA 40 5.9
30emb|BX323043.5| Human DNA sequence from clone CTD-2510L9 on chro... 40 5.9
31gb|AY119555.1| Drosophila melanogaster GH28665 full insert cDNA 40 5.9
32ref|NM_206314.1| Drosophila melanogaster CG8177-RH, transcript v... 40 5.9
33ref|NM_206313.1| Drosophila melanogaster CG8177-RI, transcript v... 40 5.9
34ref|NM_206312.1| Drosophila melanogaster CG8177-RJ, transcript v... 40 5.9
35ref|NM_206311.1| Drosophila melanogaster CG8177-RK, transcript v... 40 5.9
36gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, compl... 40 5.9
37gb|AC007920.18| Homo sapiens 3 BAC RP11-208N14 (Roswell Park Can... 40 5.9
38ref|NM_168374.1| Drosophila melanogaster CG8177-RD, transcript v... 40 5.9
39ref|NM_168373.1| Drosophila melanogaster CG8177-RE, transcript v... 40 5.9
40ref|NM_168372.1| Drosophila melanogaster CG8177-RF, transcript v... 40 5.9
41ref|NM_168371.1| Drosophila melanogaster CG8177-RC, transcript v... 40 5.9
42ref|NM_168370.1| Drosophila melanogaster CG8177-RB, transcript v... 40 5.9
43ref|NM_168369.1| Drosophila melanogaster CG8177-RG, transcript v... 40 5.9
44gb|AC079015.8| Homo sapiens chromosome 8, clone RP11-489O18, com... 40 5.9
45ref|NM_140100.1| Drosophila melanogaster CG8177-RA, transcript v... 40 5.9
46gb|AC091220.3| Drosophila melanogaster 3L BAC RP98-7E7 (Roswell ... 40 5.9
47gb|AY060460.1| Drosophila melanogaster SD03289 full length cDNA 40 5.9
48gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Ca... 40 5.9
49gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Can... 40 5.9
50gb|AC084425.1|CBRG01B5 Caenorhabditis briggsae cosmid G01B5, com... 40 5.9
51gb|AC011727.16| Homo sapiens chromosome 8, clone RP11-10H7, comp... 40 5.9
52emb|BX005055.5| Zebrafish DNA sequence from clone CH211-188N23 i... 40 5.9
53gb|AE003550.4| Drosophila melanogaster chromosome 3L, section 35... 40 5.9
54gb|AC147612.5| Mus musculus BAC clone RP23-374K9 from 6, complet... 40 5.9
55emb|AL928706.6| Mouse DNA sequence from clone RP23-54E16 on chro... 40 5.9 
>gb|AY579884.1| Hordeum vulgare AML6 mRNA, complete cds
          Length = 3269

 Score =  813 bits (410), Expect = 0.0
 Identities = 417/418 (99%), Gaps = 1/418 (0%)
 Strand = Plus / Plus

                                                                       
Query: 19  agagaaagcgtccttcttcctcctccccgactccggccggcgaggtcgggacggagctcc 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agagaaagcgtccttcttcctcctccccgactccggccggcgaggtcgggacggagctcc 60

                                                                       
Query: 79  gccgctccaccgagccgcggatcggtggcgtaggcagttgaggggctgaggaggtgaaag 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gccgctccaccgagccgcggatcggtggcgtaggcagttgaggggctgaggaggtgaaag 120

                                                                       
Query: 139 aaagaggcaacgaaagcacccatggtgatagcttccggagtgattgacaggggacacctg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagaggcaacgaaagcacccatggtgatagcttccggagtgattgacaggggacacctg 180

                                                                       
Query: 199 tcctcgttcggcggcccaccgccagactcgtcgtcgtcgttcttctccgaagaccttgtc 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcctcgttcggcggcccaccgccagactcgtcgtcgtcgttcttctccgaagaccttgtc 240

                                                                       
Query: 259 cccacagagaggcaggttgggttctggaaatcggagtcaatggtggatcagagagggagc 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cccacagagaggcaggttgggttctggaaatcggagtcaatggtggatcagagagggagc 300

                                                                       
Query: 319 aagccagtttttgcttctccacttgagaagatccatccgacgggagcaaatcctgaaggc 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagccagtttttgcttctccacttgagaagatccatccgacgggagcaaatcctgaaggc 360

                                                                     
Query: 379 agtctggaacaaacagggggccaagtcttc-agggcctagatgcccttcgcgtcagta 435
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 361 agtctggaacaaacagggggccaagtcttcaagggcctagatgcccttcgcgtcagta 418
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>dbj|AB244278.1| Oryza sativa (japonica cultivar-group) OML3 mRNA for MEI2-like RNA
           binding protein, complete cds
          Length = 2868

 Score =  129 bits (65), Expect = 8e-27
 Identities = 107/121 (88%)
 Strand = Plus / Plus

                                                                       
Query: 250 gaccttgtccccacagagaggcaggttgggttctggaaatcggagtcaatggtggatcag 309
           ||||||||||| ||||||||||| ||||| || ||||| || ||||||||||||||||| 
Sbjct: 91  gaccttgtccctacagagaggcaagttggattttggaattcagagtcaatggtggatcac 150

                                                                       
Query: 310 agagggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaat 369
           | |||||||||| |||||||||||||||||||||| |||||||| || |  |||||||||
Sbjct: 151 aaagggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaat 210

            
Query: 370 c 370
           |
Sbjct: 211 c 211



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 160 atggtgatagcttccggagtgattgacaggggacacctgtc 200
           |||||||||||||| ||||  ||||||||| | ||||||||
Sbjct: 1   atggtgatagcttctggagccattgacaggaggcacctgtc 41
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>dbj|AK121634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050M15, full
           insert sequence
          Length = 3869

 Score =  129 bits (65), Expect = 8e-27
 Identities = 107/121 (88%)
 Strand = Plus / Plus

                                                                       
Query: 250 gaccttgtccccacagagaggcaggttgggttctggaaatcggagtcaatggtggatcag 309
           ||||||||||| ||||||||||| ||||| || ||||| || ||||||||||||||||| 
Sbjct: 742 gaccttgtccctacagagaggcaagttggattttggaattcagagtcaatggtggatcac 801

                                                                       
Query: 310 agagggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaat 369
           | |||||||||| |||||||||||||||||||||| |||||||| || |  |||||||||
Sbjct: 802 aaagggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaat 861

            
Query: 370 c 370
           |
Sbjct: 862 c 862



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 154 gcacccatggtgatagcttccggagtgattgacaggggacacctgtc 200
           ||||| |||||||||||||| ||||  ||||||||| | ||||||||
Sbjct: 646 gcacctatggtgatagcttctggagccattgacaggaggcacctgtc 692
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>dbj|AK120322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057C20, full
           insert sequence
          Length = 3454

 Score =  129 bits (65), Expect = 8e-27
 Identities = 107/121 (88%)
 Strand = Plus / Plus

                                                                       
Query: 250 gaccttgtccccacagagaggcaggttgggttctggaaatcggagtcaatggtggatcag 309
           ||||||||||| ||||||||||| ||||| || ||||| || ||||||||||||||||| 
Sbjct: 305 gaccttgtccctacagagaggcaagttggattttggaattcagagtcaatggtggatcac 364

                                                                       
Query: 310 agagggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaat 369
           | |||||||||| |||||||||||||||||||||| |||||||| || |  |||||||||
Sbjct: 365 aaagggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaat 424

            
Query: 370 c 370
           |
Sbjct: 425 c 425



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 154 gcacccatggtgatagcttccggagtgattgacaggggacacctgtc 200
           ||||| |||||||||||||| ||||  ||||||||| | ||||||||
Sbjct: 209 gcacctatggtgatagcttctggagccattgacaggaggcacctgtc 255
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>dbj|AK074004.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075L18, full
           insert sequence
          Length = 3468

 Score =  129 bits (65), Expect = 8e-27
 Identities = 107/121 (88%)
 Strand = Plus / Plus

                                                                       
Query: 250 gaccttgtccccacagagaggcaggttgggttctggaaatcggagtcaatggtggatcag 309
           ||||||||||| ||||||||||| ||||| || ||||| || ||||||||||||||||| 
Sbjct: 341 gaccttgtccctacagagaggcaagttggattttggaattcagagtcaatggtggatcac 400

                                                                       
Query: 310 agagggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaat 369
           | |||||||||| |||||||||||||||||||||| |||||||| || |  |||||||||
Sbjct: 401 aaagggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaat 460

            
Query: 370 c 370
           |
Sbjct: 461 c 461



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 154 gcacccatggtgatagcttccggagtgattgacaggggacacctgtc 200
           ||||| |||||||||||||| ||||  ||||||||| | ||||||||
Sbjct: 245 gcacctatggtgatagcttctggagccattgacaggaggcacctgtc 291
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                         
Query: 312    agggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaatc 370
              |||||||||| |||||||||||||||||||||| |||||||| || |  ||||||||||
Sbjct: 134425 agggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaatc 134367



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 154    gcacccatggtgatagcttccggagtgattgacaggggacacctgtc 200
              ||||| |||||||||||||| ||||  ||||||||| | ||||||||
Sbjct: 135316 gcacctatggtgatagcttctggagccattgacaggaggcacctgtc 135270



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 266    agaggcaggttgggttctggaaatcggagtcaatggtggatca 308
              ||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 135097 agaggcaagttggattttggaattcagagtcaatggtggatca 135055
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>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12,
             complete sequence
          Length = 160603

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                        
Query: 312   agggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaatc 370
             |||||||||| |||||||||||||||||||||| |||||||| || |  ||||||||||
Sbjct: 16613 agggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaatc 16555



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 154   gcacccatggtgatagcttccggagtgattgacaggggacacctgtc 200
             ||||| |||||||||||||| ||||  ||||||||| | ||||||||
Sbjct: 17504 gcacctatggtgatagcttctggagccattgacaggaggcacctgtc 17458



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 266   agaggcaggttgggttctggaaatcggagtcaatggtggatca 308
             ||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 17285 agaggcaagttggattttggaattcagagtcaatggtggatca 17243
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>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10,
              complete sequence
          Length = 156772

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                         
Query: 312    agggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaatc 370
              |||||||||| |||||||||||||||||||||| |||||||| || |  ||||||||||
Sbjct: 134425 agggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaatc 134367



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 154    gcacccatggtgatagcttccggagtgattgacaggggacacctgtc 200
              ||||| |||||||||||||| ||||  ||||||||| | ||||||||
Sbjct: 135316 gcacctatggtgatagcttctggagccattgacaggaggcacctgtc 135270



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 266    agaggcaggttgggttctggaaatcggagtcaatggtggatca 308
              ||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 135097 agaggcaagttggattttggaattcagagtcaatggtggatca 135055
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>gb|AY579885.1| Sorghum bicolor AML1 mRNA, complete cds
          Length = 3140

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 125/155 (80%), Gaps = 3/155 (1%)
 Strand = Plus / Plus

                                                                       
Query: 238 ttcttctccgaagaccttgtccccacagagaggcaggttgggttctggaaatcg---gag 294
           ||||||||| | || || |||||||| |||||||| ||||| |||||||||||    | |
Sbjct: 477 ttcttctcccaggatctcgtccccactgagaggcaagttggattctggaaatcatcaggg 536

                                                                       
Query: 295 tcaatggtggatcagagagggagcaagccagtttttgcttctccacttgagaagatccat 354
           ||||||||  |||| | ||||||| ||||  ||||  ||||||||||||| ||| |||||
Sbjct: 537 tcaatggtccatcacaaagggagcgagcctattttcacttctccacttgataaggtccat 596

                                              
Query: 355 ccgacgggagcaaatcctgaaggcagtctggaaca 389
           |||| |||  ||| ||||| |||  ||||||||||
Sbjct: 597 ccgatgggctcaagtcctgcaggtggtctggaaca 631



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 154 gcacccatggtgatagcttccggagtgattgacaggggacacctgtcctcgtt 206
           ||||| ||||||||||| |||||||   |||||||| | ||||||||| ||||
Sbjct: 393 gcacctatggtgatagcatccggagccgttgacaggagccacctgtccccgtt 445
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>ref|NM_142205.2| Drosophila melanogaster CG6130-RA (CG6130), mRNA
          Length = 1545

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 225 ctcgtcgtcgtcgttcttctccg 247
           |||||||||||||||||||||||
Sbjct: 286 ctcgtcgtcgtcgttcttctccg 264
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>gb|AY051426.1| Drosophila melanogaster GH10346 full length cDNA
          Length = 1517

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 225 ctcgtcgtcgtcgttcttctccg 247
           |||||||||||||||||||||||
Sbjct: 240 ctcgtcgtcgtcgttcttctccg 218
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>gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, region 88E-88F, BAC clone
              BACR13A02, complete sequence
          Length = 166141

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 225    ctcgtcgtcgtcgttcttctccg 247
              |||||||||||||||||||||||
Sbjct: 141723 ctcgtcgtcgtcgttcttctccg 141745
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>gb|AC007769.3|AC007769 Drosophila melanogaster, chromosome 3R, region 88F-88F, BAC clone
             BACR17K19, complete sequence
          Length = 167918

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 225   ctcgtcgtcgtcgttcttctccg 247
             |||||||||||||||||||||||
Sbjct: 41817 ctcgtcgtcgtcgttcttctccg 41839
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>gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46 of 118 of the complete
              sequence
          Length = 236375

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 225    ctcgtcgtcgtcgttcttctccg 247
              |||||||||||||||||||||||
Sbjct: 186155 ctcgtcgtcgtcgttcttctccg 186177
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>ref|NM_179270.1| Arabidopsis thaliana DNA binding AT1G06230 transcript variant
            AT1G06230.2 mRNA, complete cds
          Length = 3141

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 327  ttttgcttctccacttgagaag 348
            ||||||||||||||||||||||
Sbjct: 2573 ttttgcttctccacttgagaag 2552
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>ref|NM_100505.2| Arabidopsis thaliana DNA binding AT1G06230 transcript variant
            AT1G06230.1 mRNA, complete cds
          Length = 3194

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 327  ttttgcttctccacttgagaag 348
            ||||||||||||||||||||||
Sbjct: 2626 ttttgcttctccacttgagaag 2605
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>emb|CR731558.2|CNS0GREZ Tetraodon nigroviridis full-length cDNA
          Length = 2145

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 225  ctcgtcgtcgtcgttcttctcc 246
            ||||||||||||||||||||||
Sbjct: 1077 ctcgtcgtcgtcgttcttctcc 1056
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>emb|CR728100.2|CNS0GOQY Tetraodon nigroviridis full-length cDNA
          Length = 2145

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 225  ctcgtcgtcgtcgttcttctcc 246
            ||||||||||||||||||||||
Sbjct: 1077 ctcgtcgtcgtcgttcttctcc 1056
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>emb|CR683307.2|CNS0FQ6V Tetraodon nigroviridis full-length cDNA
          Length = 1470

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 225 ctcgtcgtcgtcgttcttctcc 246
           ||||||||||||||||||||||
Sbjct: 617 ctcgtcgtcgtcgttcttctcc 596
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>emb|BX816821.1|CNS0AEK3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH6ZE12 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2748

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 327  ttttgcttctccacttgagaag 348
            ||||||||||||||||||||||
Sbjct: 2298 ttttgcttctccacttgagaag 2277
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>gb|AC025290.3|F9P14 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 48872

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 327   ttttgcttctccacttgagaag 348
             ||||||||||||||||||||||
Sbjct: 35014 ttttgcttctccacttgagaag 34993
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>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome
          Length = 1315030

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 323   cagtttttgcttctccacttgagaa 347
             |||||||||||||||||| ||||||
Sbjct: 75935 cagtttttgcttctccacctgagaa 75959
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>emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chromosome 10 Contains the 5'
              end of the PAX2 gene for paired box gene 2 and fifteen CpG
              islands, complete sequence
          Length = 187101

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 252    ccttgtccccacagagaggca 272
              |||||||||||||||||||||
Sbjct: 159691 ccttgtccccacagagaggca 159671
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 330     tgcttctccacttgagaagat 350
               |||||||||||||||||||||
Sbjct: 3064002 tgcttctccacttgagaagat 3064022
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>ref|XM_514528.1| PREDICTED: Pan troglodytes sorting nexin 5 (LOC458110), mRNA
          Length = 1959

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 284  ggaaatcggagtcaatggtg 303
            ||||||||||||||||||||
Sbjct: 1837 ggaaatcggagtcaatggtg 1818
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>gb|AY579890.1| Hordeum vulgare AML6 gene, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 413 cctagatgcccttcgcgtcagta 435
           |||||||| ||||||||||||||
Sbjct: 2   cctagatgnccttcgcgtcagta 24
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>gb|BT012471.1| Drosophila melanogaster RE24802 full insert cDNA
          Length = 4948

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 3978 ctcgtcgtcgtcgttcttct 3959
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>gb|AC164086.3| Mus musculus BAC clone RP23-25E6 from chromosome 13, complete sequence
          Length = 214085

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   gggctgaggaggtgaaagaa 140
             ||||||||||||||||||||
Sbjct: 61096 gggctgaggaggtgaaagaa 61077
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>gb|BT011364.1| Drosophila melanogaster RE66627 full insert cDNA
          Length = 4523

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 4399 ctcgtcgtcgtcgttcttct 4380
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>emb|BX323043.5| Human DNA sequence from clone CTD-2510L9 on chromosome 1, complete
             sequence
          Length = 41309

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   tggatcagagagggagcaag 321
             ||||||||||||||||||||
Sbjct: 28348 tggatcagagagggagcaag 28367
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>gb|AY119555.1| Drosophila melanogaster GH28665 full insert cDNA
          Length = 3697

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 2711 ctcgtcgtcgtcgttcttct 2692
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>ref|NM_206314.1| Drosophila melanogaster CG8177-RH, transcript variant H (CG8177),
            mRNA
          Length = 4015

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 3905 ctcgtcgtcgtcgttcttct 3886
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>ref|NM_206313.1| Drosophila melanogaster CG8177-RI, transcript variant I (CG8177),
            mRNA
          Length = 4189

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 4079 ctcgtcgtcgtcgttcttct 4060
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>ref|NM_206312.1| Drosophila melanogaster CG8177-RJ, transcript variant J (CG8177),
            mRNA
          Length = 3910

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 3800 ctcgtcgtcgtcgttcttct 3781
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>ref|NM_206311.1| Drosophila melanogaster CG8177-RK, transcript variant K (CG8177),
            mRNA
          Length = 4111

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 4001 ctcgtcgtcgtcgttcttct 3982
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>gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, complete sequence
          Length = 195110

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   aagaggcaacgaaagcaccc 159
             ||||||||||||||||||||
Sbjct: 61054 aagaggcaacgaaagcaccc 61035
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>gb|AC007920.18| Homo sapiens 3 BAC RP11-208N14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 173534

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   agttgaggggctgaggaggt 133
             ||||||||||||||||||||
Sbjct: 42382 agttgaggggctgaggaggt 42363
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>ref|NM_168374.1| Drosophila melanogaster CG8177-RD, transcript variant D (CG8177),
            mRNA
          Length = 3819

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 3709 ctcgtcgtcgtcgttcttct 3690
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>ref|NM_168373.1| Drosophila melanogaster CG8177-RE, transcript variant E (CG8177),
            mRNA
          Length = 4895

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 3910 ctcgtcgtcgtcgttcttct 3891
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>ref|NM_168372.1| Drosophila melanogaster CG8177-RF, transcript variant F (CG8177),
            mRNA
          Length = 4509

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 4399 ctcgtcgtcgtcgttcttct 4380
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>ref|NM_168371.1| Drosophila melanogaster CG8177-RC, transcript variant C (CG8177),
            mRNA
          Length = 4235

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 4125 ctcgtcgtcgtcgttcttct 4106
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>ref|NM_168370.1| Drosophila melanogaster CG8177-RB, transcript variant B (CG8177),
            mRNA
          Length = 4088

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 3978 ctcgtcgtcgtcgttcttct 3959
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>ref|NM_168369.1| Drosophila melanogaster CG8177-RG, transcript variant G (CG8177),
            mRNA
          Length = 5585

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 4600 ctcgtcgtcgtcgttcttct 4581
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>gb|AC079015.8| Homo sapiens chromosome 8, clone RP11-489O18, complete sequence
          Length = 157122

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   gaggcaggttgggttctgga 286
             ||||||||||||||||||||
Sbjct: 42319 gaggcaggttgggttctgga 42338
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>ref|NM_140100.1| Drosophila melanogaster CG8177-RA, transcript variant A (CG8177),
            mRNA
          Length = 5164

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 4179 ctcgtcgtcgtcgttcttct 4160
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>gb|AC091220.3| Drosophila melanogaster 3L BAC RP98-7E7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179838

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ctcgtcgtcgtcgttcttct 244
              ||||||||||||||||||||
Sbjct: 123725 ctcgtcgtcgtcgttcttct 123706
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>gb|AY060460.1| Drosophila melanogaster SD03289 full length cDNA
          Length = 2930

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ctcgtcgtcgtcgttcttct 244
            ||||||||||||||||||||
Sbjct: 2804 ctcgtcgtcgtcgttcttct 2785
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>gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 207228

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     tgtagagagggagagaaagc 27
             ||||||||||||||||||||
Sbjct: 13107 tgtagagagggagagaaagc 13126
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>gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 135177

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     tgtagagagggagagaaagc 27
             ||||||||||||||||||||
Sbjct: 89716 tgtagagagggagagaaagc 89735
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>gb|AC084425.1|CBRG01B5 Caenorhabditis briggsae cosmid G01B5, complete sequence
          Length = 42310

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   gaggaggtgaaagaaagagg 145
             ||||||||||||||||||||
Sbjct: 25887 gaggaggtgaaagaaagagg 25868
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>gb|AC011727.16| Homo sapiens chromosome 8, clone RP11-10H7, complete sequence
          Length = 152530

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    aagaggcaacgaaagcaccc 159
              ||||||||||||||||||||
Sbjct: 130335 aagaggcaacgaaagcaccc 130316
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>emb|BX005055.5| Zebrafish DNA sequence from clone CH211-188N23 in linkage group 23,
             complete sequence
          Length = 156598

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 11    agagagggagagaaagcgtccttc 34
             |||||| |||||||||||||||||
Sbjct: 49916 agagagagagagaaagcgtccttc 49939
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>gb|AE003550.4| Drosophila melanogaster chromosome 3L, section 35 of 83 of the complete
             sequence
          Length = 304975

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   ctcgtcgtcgtcgttcttct 244
             ||||||||||||||||||||
Sbjct: 22507 ctcgtcgtcgtcgttcttct 22488
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>gb|AC147612.5| Mus musculus BAC clone RP23-374K9 from 6, complete sequence
          Length = 190156

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 29    tccttcttcctcctccccgactcc 52
             |||||||||||||||||| |||||
Sbjct: 50500 tccttcttcctcctcccccactcc 50523
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>emb|AL928706.6| Mouse DNA sequence from clone RP23-54E16 on chromosome 2, complete
             sequence
          Length = 205358

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ttgaggggctgaggaggtga 135
             ||||||||||||||||||||
Sbjct: 19619 ttgaggggctgaggaggtga 19638


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,282,589
Number of Sequences: 3902068
Number of extensions: 4282589
Number of successful extensions: 128171
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127944
Number of HSP's gapped (non-prelim): 226
length of query: 437
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 415
effective length of database: 17,147,199,772
effective search space: 7116087905380
effective search space used: 7116087905380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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