>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 835

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 31/50 (62%), Positives = 42/50 (84%)
 Frame = +2

Query: 236 NVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIET 385
           +VSYDH+A+ + GQR++L+S  +HYPR+TPEMWP +I K KEGG DVI+T
Sbjct: 23  SVSYDHKAIIVNGQRKILISGSIHYPRSTPEMWPDLIQKAKEGGVDVIQT 72

>BGAL_MALDO (P48981) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 731

 Score = 77.8 bits (190), Expect = 6e-15
 Identities = 31/50 (62%), Positives = 42/50 (84%)
 Frame = +2

Query: 236 NVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIET 385
           +VSYDH+A+ I GQ+R+L+S  +HYPR+TPEMWP +I K K+GG DVI+T
Sbjct: 25  SVSYDHKAIIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQT 74

>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 832

 Score = 77.0 bits (188), Expect = 1e-14
 Identities = 31/50 (62%), Positives = 42/50 (84%)
 Frame = +2

Query: 236 NVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIET 385
           +V+YDH++V I GQRR+L+S  +HYPR+TPEMWP +I K K+GG DVI+T
Sbjct: 26  SVTYDHKSVIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQT 75

>BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.2.1.23)|
           (Lactase) (SR12 protein)
          Length = 731

 Score = 70.9 bits (172), Expect = 7e-13
 Identities = 30/50 (60%), Positives = 39/50 (78%)
 Frame = +2

Query: 236 NVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIET 385
           NV YD+RA++I  QRR+L+S  +HYPR+TPEMWP II K K+   DVI+T
Sbjct: 30  NVWYDYRAIKINDQRRILLSGSIHYPRSTPEMWPDIIEKAKDSQLDVIQT 79

>BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 828

 Score = 70.5 bits (171), Expect = 9e-13
 Identities = 29/49 (59%), Positives = 39/49 (79%)
 Frame = +2

Query: 239 VSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIET 385
           VS+D RA+ I GQRR+L+S  +HYPR+T +MWP +I+K K+GG D IET
Sbjct: 27  VSHDERAITIDGQRRILLSGSIHYPRSTSDMWPDLISKAKDGGLDTIET 75

>BGAL_CANFA (Q9TRY9) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase)
          Length = 668

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 17/61 (27%), Positives = 23/61 (37%)
 Frame = +2

Query: 203 RGTDGPYFEPFNVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIE 382
           RG        F + Y H      GQ    +S  +HY R     W   + K K  G + I+
Sbjct: 23  RGLRNASQRTFTIDYSHNRFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQ 82

Query: 383 T 385
           T
Sbjct: 83  T 83

>BGAL_FELCA (O19015) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase)
          Length = 669

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 17/61 (27%), Positives = 23/61 (37%)
 Frame = +2

Query: 203 RGTDGPYFEPFNVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIE 382
           RG        F + Y H      GQ    +S  +HY R     W   + K K  G + I+
Sbjct: 23  RGLRNASQRTFKIDYGHNRFLKDGQPFRYISGSIHYFRVPRFYWKDRLLKMKMAGLNAIQ 82

Query: 383 T 385
           T
Sbjct: 83  T 83

>SYV_CORDI (Q6NFV0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 919

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +2

Query: 143 VAGYFTASALAAGELSQVVGRGTDGPYFEPFNVSYDHRAVRIGGQRRMLVSAG 301
           VA       LA     +++G+GTDG    PFN  + H  VR    R+M  S G
Sbjct: 516 VARMMMFGTLAGETTPEILGQGTDGRPQIPFNDLFLHGLVRDEQGRKMSKSLG 568

>SYV_COREF (Q8FN65) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 903

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +2

Query: 143 VAGYFTASALAAGELSQVVGRGTDGPYFEPFNVSYDHRAVRIGGQRRMLVSAG 301
           VA        AA E  +++G GTDG    PF   + H  VR    R+M  S G
Sbjct: 506 VARMMMFGTFAAKETPELLGEGTDGRPQVPFTDLFLHGLVRDEHGRKMSKSLG 558

>TPN50_TREPA (P38369) Outer membrane protein tpn50 precursor (Antigen tpp57)|
          Length = 417

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 200 GRGTDGPYFEPFNVSYDHRA-VRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEG 364
           G G   P+  PF VSY +R  V+ G +R   ++A       +P+    +    KEG
Sbjct: 161 GFGIQTPFIVPFTVSYTYRGEVQRGSRRYHHITAAYSMSYESPKRTHGVQRNAKEG 216

>TF2B_RAT (P62916) Transcription initiation factor IIB (General transcription|
           factor TFIIB) (RNA polymerase II alpha initiation
           factor)
          Length = 316

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 170 LAAGELSQVVGRGTDGPYFEPF-NVSYDHRAVRIGGQRRML 289
           L+ G+LS ++G+GT    F+ F N  Y +R       R M+
Sbjct: 75  LSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMM 115

>TF2B_PONPY (Q5R886) Transcription initiation factor IIB (General transcription|
           factor TFIIB)
          Length = 316

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 170 LAAGELSQVVGRGTDGPYFEPF-NVSYDHRAVRIGGQRRML 289
           L+ G+LS ++G+GT    F+ F N  Y +R       R M+
Sbjct: 75  LSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMM 115

>TF2B_MOUSE (P62915) Transcription initiation factor IIB (General transcription|
           factor TFIIB) (RNA polymerase II alpha initiation
           factor)
          Length = 316

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 170 LAAGELSQVVGRGTDGPYFEPF-NVSYDHRAVRIGGQRRML 289
           L+ G+LS ++G+GT    F+ F N  Y +R       R M+
Sbjct: 75  LSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMM 115

>TF2B_HUMAN (Q00403) Transcription initiation factor IIB (General transcription|
           factor TFIIB) (S300-II)
          Length = 316

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 170 LAAGELSQVVGRGTDGPYFEPF-NVSYDHRAVRIGGQRRML 289
           L+ G+LS ++G+GT    F+ F N  Y +R       R M+
Sbjct: 75  LSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMM 115

>PRMA_XANCP (Q8PD33) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 306

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 149 GYFTASALAAGELSQVVGRGTDGPYFEPFNVSYDHRAVRIGGQRR 283
           G    S +  G+   +V R T  P+FE  +  YD   VRI G RR
Sbjct: 263 GRIALSGIMQGQEQDLVQRYT--PWFEHLHCEYDAEWVRIDGVRR 305

>GLMM_ANAMM (Q5PA34) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 452

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +2

Query: 23  IKGKTSLHPSLCFSTLLLAMAASXXXXXXXXXXXXXXXXVVAGYFTASALAAGELSQVVG 202
           ++G+ +++P    + L L MA                   ++GY   SAL +G ++  V 
Sbjct: 9   VRGRANVYPMDPITVLRLGMAIGLEARKVGTQVVLGKDTRISGYMVESALVSGLVAMGVN 68

Query: 203 RGTDGP 220
            G  GP
Sbjct: 69  VGLLGP 74

>TF2B_XENLA (P29054) Transcription initiation factor IIB (General transcription|
           factor TFIIB)
          Length = 316

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 170 LAAGELSQVVGRGTDGPYFEPF-NVSYDHRAVRIGGQRRML 289
           L+ G+L+ ++G+GT    F+ F N  Y +R       R M+
Sbjct: 75  LSGGDLTTMIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMM 115

>VCF2_LAMBD (P03714) Tail attachment protein (Minor capsid protein FII)|
          Length = 117

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 143 VAGYF-TASALAAGELSQVVGRGTDGPYFEPFNVSYDHRAVRIGG 274
           + GY  T++ + +GE S  V RG    + +P N+SY  + VR+ G
Sbjct: 19  IRGYMGTSATITSGEQSGAVIRGV---FDDPENISYAGQGVRVEG 60

>CATA_RHIME (P95631) Catalase A (EC 1.11.1.6)|
          Length = 494

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 271 ADAHRAMIVAHVERLEVGAIRPPPHH 194
           ADAHR  +  H E + V   R P HH
Sbjct: 338 ADAHRYRLGTHYEHIPVNQPRCPVHH 363

>TRP_NEUCR (P13228) Tryptophan synthase (EC 4.2.1.20)|
          Length = 708

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 290 VSAGVHYPRATPEMWPSIIAKCKEGGADVIE 382
           V+AG  +P  TP+    I+   ++GGADVIE
Sbjct: 23  VTAGFPHPEQTPD----ILLAMEKGGADVIE 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,855,777
Number of Sequences: 219361
Number of extensions: 615760
Number of successful extensions: 1887
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)