ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29f08 |
|---|---|
| Clone Library Name | barley_pub |
>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 112 bits (281), Expect = 4e-25 Identities = 62/144 (43%), Positives = 96/144 (66%), Gaps = 3/144 (2%) Frame = +1 Query: 61 AFAVSGNTVFYVKDRFLRFYEYSTQKEVQVAPIRRPGSVSLNQSPRTLSYSPTENAVLIC 240 A+AV GN + YVKDRFLR ++++ K+V V +R + +SY+P ENAVL+C Sbjct: 325 AYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFN----MSYNPAENAVLLC 380 Query: 241 ---SDVDGGSYELFIVPKDSAGRADYLQDAKKGSGGSAVFIARNRFAVLEKSSNQVLVKS 411 S+++ +Y+L+ +PKD+ + + K+ SG +AV++ARNRFAVL++ + +L+K+ Sbjct: 381 TRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDR-MHSLLIKN 439 Query: 412 LKNEIVKKSPLPIXTDVIYYAGTG 483 LKNEI KK +P D I+YAGTG Sbjct: 440 LKNEITKKVQVP-NCDEIFYAGTG 462
>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 112 bits (280), Expect = 5e-25 Identities = 62/144 (43%), Positives = 97/144 (67%), Gaps = 3/144 (2%) Frame = +1 Query: 61 AFAVSGNTVFYVKDRFLRFYEYSTQKEVQVAPIRRPGSVSLNQSPRTLSYSPTENAVLIC 240 A+AV GN + YVKDRFLR ++++ K+V V +R + ++SY+P ENAVL+C Sbjct: 325 AYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVF----SMSYNPAENAVLLC 380 Query: 241 ---SDVDGGSYELFIVPKDSAGRADYLQDAKKGSGGSAVFIARNRFAVLEKSSNQVLVKS 411 S+++ +Y+L+ +PKD+ + + K+ SG +AV++ARNRFAVL++ + +L+K+ Sbjct: 381 TRASNLENSTYDLYTIPKDADTQNPDAPEGKRSSGLTAVWVARNRFAVLDR-MHSLLIKN 439 Query: 412 LKNEIVKKSPLPIXTDVIYYAGTG 483 LKNEI KK +P D I+YAGTG Sbjct: 440 LKNEITKKVQVP-NCDEIFYAGTG 462
>KV3K_HUMAN (P06311) Ig kappa chain V-III region IARC/BL41 precursor| Length = 128 Score = 35.4 bits (80), Expect = 0.084 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 11/72 (15%) Frame = +1 Query: 169 GSVSLNQSPRTLSYSPTENAVLICSDVDGGSYELF-----------IVPKDSAGRADYLQ 315 G + L QSP TLS SP E+A L C S L ++ +D++ RA+ + Sbjct: 20 GEIVLTQSPGTLSLSPGESATLSCRASQSVSSNLAWYQQKRGQSPRLLIRDASSRANGIP 79 Query: 316 DAKKGSGGSAVF 351 D GSG F Sbjct: 80 DRFSGSGSGTDF 91
>Y1663_HAEIN (Q57544) Hypothetical protein HI1663| Length = 212 Score = 32.0 bits (71), Expect = 0.93 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Frame = +1 Query: 247 VDGGSYELFIVPKDSAGRADYLQDAKKGS-GGSAVF---IARNRFAVLEKSSNQVLVKSL 414 +DG ++E+ +P + G +++ KK + G +F I R F + + L+ S+ Sbjct: 119 LDGFNFEILHLPGHTPGHIGFIEHEKKVAFTGDVLFQGGIGRTDFP---RGDYETLISSI 175 Query: 415 KNEIVKKSPLPIXTDVIYYAGTGTY 489 + ++ LP+ D+I AG G+Y Sbjct: 176 RTKL-----LPLNDDIIIIAGHGSY 195
>RGA2_YEAST (Q06407) Rho-type GTPase-activating protein 2| Length = 1009 Score = 31.2 bits (69), Expect = 1.6 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%) Frame = +1 Query: 121 EYSTQKEVQVAP-IRRPGSVSLNQSPRTLSYSPTENAVLICSDVDGGSYELFIVPKDSAG 297 E S+ K ++V + PG V L+ SP+ L Y+P + + S +YE VP Sbjct: 748 EISSPKLIRVHDELPSPGKVPLSPSPKRLDYTPDGSHLYGSSLQARCAYEKSTVPIIIRC 807 Query: 298 RADYLQDAKKGSGGSAVFIARNRFAVLEKSSNQVLVKSLKNEIVKKSPL 444 D ++ I N + KS +Q LV+ ++NE + + L Sbjct: 808 CIDRIEKDD---------IGLNMEGLYRKSGSQTLVEEIENEFAQNNSL 847
>KV3M_HUMAN (P18136) Ig kappa chain V-III region HIC precursor| Length = 129 Score = 30.8 bits (68), Expect = 2.1 Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 12/73 (16%) Frame = +1 Query: 169 GSVSLNQSPRTLSYSPTENAVLIC--SDVDGGSYELFIVPK----------DSAGRADYL 312 G + L QSP TLS SP E A L C S SY + K ++ RA + Sbjct: 20 GEIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGI 79 Query: 313 QDAKKGSGGSAVF 351 D GSG F Sbjct: 80 PDRFSGSGSGTDF 92
>KV3L_HUMAN (P18135) Ig kappa chain V-III region HAH precursor| Length = 129 Score = 30.8 bits (68), Expect = 2.1 Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 12/73 (16%) Frame = +1 Query: 169 GSVSLNQSPRTLSYSPTENAVLIC--SDVDGGSYELFIVPK----------DSAGRADYL 312 G + L QSP TLS SP E A L C S SY + K ++ RA + Sbjct: 20 GEIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGI 79 Query: 313 QDAKKGSGGSAVF 351 D GSG F Sbjct: 80 PDRFSGSGSGTDF 92
>KV3I_HUMAN (P04433) Ig kappa chain V-III region VG precursor (Fragment)| Length = 115 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/24 (58%), Positives = 15/24 (62%) Frame = +1 Query: 169 GSVSLNQSPRTLSYSPTENAVLIC 240 G + L QSP TLS SP E A L C Sbjct: 20 GEIVLTQSPATLSLSPGERATLSC 43
>HISX_CAMJR (Q5HSJ3) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 428 Score = 30.0 bits (66), Expect = 3.5 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 5/97 (5%) Frame = +1 Query: 124 YSTQKEVQVAPIRRPGSVSLNQSPRTLSYSPTENAVLICSDVDGGSYELFIVPKDSAGR- 300 Y TQ ++V I PG+ + ++ R +S A+ D+ G E+ ++ D A Sbjct: 192 YGTQSVLKVDKIFGPGNAFVTEAKRQVSSDINGAAI----DMQAGPSEVLVIADDLANEK 247 Query: 301 ---ADYLQDAKKGSGGSAVFIARNR-FAVLEKSSNQV 399 +D L A+ G+ + + ++ FA +K+S++V Sbjct: 248 FVASDLLSQAEHGADSQVILVCLSQDFA--KKASDEV 282
>HISX_CAMJE (Q9PM77) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 428 Score = 30.0 bits (66), Expect = 3.5 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 5/97 (5%) Frame = +1 Query: 124 YSTQKEVQVAPIRRPGSVSLNQSPRTLSYSPTENAVLICSDVDGGSYELFIVPKDSAGR- 300 Y TQ ++V I PG+ + ++ R +S A+ D+ G E+ ++ D A Sbjct: 192 YGTQSVLKVDKIFGPGNAFVTEAKRQVSSDINGAAI----DMQAGPSEVLVIADDLANEK 247 Query: 301 ---ADYLQDAKKGSGGSAVFIARNR-FAVLEKSSNQV 399 +D L A+ G+ + + ++ FA +K+S++V Sbjct: 248 FVASDLLSQAEHGADSQVILVCLSQDFA--KKASDEV 282
>KV3C_HUMAN (P01621) Ig kappa chain V-III region NG9 precursor (Fragment)| Length = 100 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/24 (58%), Positives = 15/24 (62%) Frame = +1 Query: 169 GSVSLNQSPRTLSYSPTENAVLIC 240 G + L QSP TLS SP E A L C Sbjct: 4 GEIVLTQSPGTLSLSPGERATLSC 27
>GYRB_THEMA (P77993) DNA gyrase subunit B (EC 5.99.1.3) (Topoisomerase II| subunit B) Length = 636 Score = 29.6 bits (65), Expect = 4.6 Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Frame = +1 Query: 238 CSDVDGGSYELFIVPKDSA-GRADYLQDAKKGSGGSAVFIARNRFAVLEKSSNQVLVKSL 414 CS ELFIV DSA G A +D + AV R + +EKSS L + L Sbjct: 413 CSSTHREKTELFIVEGDSAGGSAKQARDRE----FQAVLPIRGKILNVEKSS---LDRLL 465 Query: 415 KNEIVKKSPLPIXTDVIYYAGTG 483 KNE + +D+I GTG Sbjct: 466 KNEQI--------SDIIVAVGTG 480
>KV3H_HUMAN (P04207) Ig kappa chain V-III region CLL precursor (Rheumatoid| factor) Length = 129 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +1 Query: 169 GSVSLNQSPRTLSYSPTENAVLIC 240 G + + QSP TLS SP E A L C Sbjct: 20 GEIVMTQSPATLSVSPGERATLSC 43
>CP6B6_HELAM (Q95031) Cytochrome P450 6B6 (EC 1.14.14.1) (CYPVIB6)| Length = 504 Score = 29.6 bits (65), Expect = 4.6 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Frame = -2 Query: 437 LFFTISFLRLFTKTWLLLFSRTANRFRAMKTAEP-PDPFFASCK*SALPAESLGTMKSSY 261 +F+ + + + + F+RT N ++ P P FF + K SALP +++G + Sbjct: 3 IFYFPAVISVLIVSLYFYFTRTFNYWKKRNVRGPEPTVFFGNLKDSALPRKNMGVVMEEL 62 Query: 260 EPPSTSEQIKTAFSVGLYDNVLGD*FKLTDPGLLI 156 E++ +G+Y ++T P LL+ Sbjct: 63 YNMFPEEKV-----IGIY--------RMTSPCLLV 84
>AMY_CLOAB (P23671) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 760 Score = 29.3 bits (64), Expect = 6.0 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +1 Query: 136 KEVQVAPIRRPGSVSLNQSPRTLSYSPTENAVLICSDVDGGSYELF 273 K VQV+P++ S S N S L Y PT A+ + GSY+ F Sbjct: 80 KAVQVSPVQGTKSNSTNSSDWWLLYQPTNQAI---GNAQLGSYDDF 122
>KV3A_HUMAN (P01619) Ig kappa chain V-III region B6| Length = 108 Score = 29.3 bits (64), Expect = 6.0 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 12/71 (16%) Frame = +1 Query: 175 VSLNQSPRTLSYSPTENAVLIC--SDVDGGSYELFIVPKDS----------AGRADYLQD 318 + L +SP TLS SP + A L C S G+Y + K + RA + D Sbjct: 2 IVLTZSPGTLSLSPGZRAALSCRASQSLSGNYLAWYQQKPGQAPRLLMYGVSSRATGIPD 61 Query: 319 AKKGSGGSAVF 351 GSG A F Sbjct: 62 RFSGSGSGADF 72
>MUS81_RAT (Q4KM32) Crossover junction endonuclease MUS81 (EC 3.1.22.-)| Length = 551 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +1 Query: 121 EYSTQKEVQVAPIRRPGSVSLNQSPRTLSYSPTENAVLICSDV 249 E+ + V A + PG+ + R L P+E VL+C D+ Sbjct: 233 EHHEESPVPEAILSEPGTTEVGVQQRPLELRPSEYRVLLCVDI 275
>YCF56_PORPU (P51208) Hypothetical 29.5 kDa protein ycf56 (ORF263)| Length = 263 Score = 28.9 bits (63), Expect = 7.8 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 6/97 (6%) Frame = +1 Query: 19 HIFFPSEIQITKLTAFAVSGNTVFYVKDRFLRFYEYSTQKEVQVAPIRRPGSVS------ 180 HIF S+++++++T +SG + Y + ++ I P S+ Sbjct: 43 HIFLKSQLKLSQITKIFISGTSFKYAAGLPGLLSSLTLSGKINTVSIYGPNSLKAYLQAC 102 Query: 181 LNQSPRTLSYSPTENAVLICSDVDGGSYELFIVPKDS 291 S S+S +AV V G SY + +P S Sbjct: 103 TKYSQTNFSFSVNFHAVSYGKLVSGQSYTVICLPLSS 139 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,797,250 Number of Sequences: 219361 Number of extensions: 1554693 Number of successful extensions: 4175 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4034 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4167 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
