>RTCA_ECOLI (P46849) RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)|
           (RNA-3'-phosphate cyclase) (RNA cyclase)
          Length = 338

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = -1

Query: 435 RLVLHTSLISFG*KVHFHTVILQYSLHPLGKPSLGGLESRGVCWGRSPVAAFDTLEL 265
           R VL   L   G  +H  T +L++  +P G    GG+ +  V    SPVA+F+TL+L
Sbjct: 136 RRVLEPLLAKIG--IHQQTTLLRHGFYPAG----GGVVATEV----SPVASFNTLQL 182

>RTCA_ECO57 (P58127) RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)|
           (RNA-3'-phosphate cyclase) (RNA cyclase)
          Length = 342

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = -1

Query: 435 RLVLHTSLISFG*KVHFHTVILQYSLHPLGKPSLGGLESRGVCWGRSPVAAFDTLEL 265
           R VL   L   G  +H  T +L++  +P G    GG+ +  V    SPVA+F+TL+L
Sbjct: 136 RRVLEPLLAKIG--IHQQTTLLRHGFYPAG----GGVVATEV----SPVASFNTLQL 182

>PDC1_KLUMA (P33149) Pyruvate decarboxylase (EC 4.1.1.1)|
          Length = 564

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 269 SKVSNAATGDRP---QHTPRDSKPPREGFPNGCKEY*RITVWKWTFQPKLIKE 418
           +KV +AA G +P    H PRD+KP  +  P   K+      W WT   K ++E
Sbjct: 335 TKVKDAAKGYKPVPVPHAPRDNKPVADSTP--LKQ-----EWVWTQVGKFLQE 380

>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
            (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1745

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 261  TGAPRYQMLPLETDPNTLPVIPNLPEKVFPTDAKSTEGLRYGSGLFNQN 407
            T  P+YQM  + T P  +PV P+  E+    D  +   +    G+FN N
Sbjct: 1594 TDKPKYQMNNISTMPKAVPVSPSAVEEDEDEDGHTV--VATARGIFNSN 1640

>ZO1_CANFA (O97758) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
            (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1769

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 270  PRYQMLPLETDPNTLPVIPNLPEKVFPTDAKSTEGLRYGSGLFNQN 407
            P+YQM  L T P  +PV P+  E+    D  +   +    G+FN N
Sbjct: 1601 PKYQMNNLSTVPKAIPVSPSAVEEDEDEDGHTV--VATARGVFNNN 1644


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,890,030
Number of Sequences: 219361
Number of extensions: 1026107
Number of successful extensions: 3351
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3350
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)