ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472805.1| Oryza sativa (japonica cultivar-group), predic... 289 4e-75
2emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4,... 198 1e-47
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
4ref|NM_114341.3| Arabidopsis thaliana ATP binding / microtubule ... 54 4e-04
5gb|AC002534.1| Arabidopsis thaliana BAC T32N15 from chromosome I... 54 4e-04
6gb|AF398149.4| Arabidopsis thaliana kinesin-like protein heavy c... 54 4e-04
7dbj|AP006125.1| Lotus japonicus genomic DNA, chromosome 2, clone... 52 0.002
8gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.10
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
10gb|AY742795.1| Anguilla japonica luteinizing hormone receptor mR... 44 0.40
11dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.40
12gb|AC125325.4| Mus musculus BAC clone RP23-296K22 from chromosom... 42 1.6
13gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.6
14gb|AC145794.2| Xenopus tropicalis clone CH216-159D20, complete s... 42 1.6
15dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
16gb|AC156800.2| Mus musculus BAC clone RP23-366B23 from chromosom... 42 1.6
17gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 1.6
18emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.6
19gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
20emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.6
21gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 6.2
22ref|NM_123756.1| Arabidopsis thaliana disulfide oxidoreductase/ ... 40 6.2
23gb|AC134342.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
24gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 6.2
25gb|AC135420.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
26gb|DQ159070.1| Arabidopsis thaliana putative flavin monooxygenas... 40 6.2
27emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.2
28emb|AJ632303.1| Sus scrofa partial ICAM3 gene, TYK2, CDC37, PDE4... 40 6.2
29emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 6.2
30gb|AC120884.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
31emb|AL445222.9| Human DNA sequence from clone RP11-356B19 on chr... 40 6.2
32gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
33emb|X87822.1|MAFASGEN B.ammoniagenes FAS gene 40 6.2
34emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome... 40 6.2
35gb|AC164166.2| Mus musculus BAC clone RP23-88C18 from chromosome... 40 6.2
36emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 6.2
37dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 6.2
38gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 6.2
39gb|AF371372.1|AF371372 Cricetulus griseus hypothetical protein 1... 40 6.2
40dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
41emb|BX831848.1|CNS0A16P Arabidopsis thaliana Full-length cDNA Co... 40 6.2
42dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.2
43dbj|AP000368.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.2
44dbj|AK109971.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
45dbj|AK068694.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
46dbj|AB049187.1| Kitasatospora griseola dxr gene for 1-deoxy-D-xy... 40 6.2
47gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.2
48gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
49emb|CT030736.8| Mouse DNA sequence from clone RP23-396K21 on chr... 40 6.2
50gb|U82820.1|MTU82820 Mycobacterium tuberculosis 10 kDa iron regu... 40 6.2 
>ref|XM_472805.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4392

 Score =  289 bits (146), Expect = 4e-75
 Identities = 218/242 (90%)
 Strand = Plus / Plus

                                                                       
Query: 219 aggggatggcgctgcgcaaggccgaggaagccgctgcgcggaggtgcgaggcggcgcgat 278
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 35  aggggatggcgctgcgcaaggccgaggaatccgccgcgcggaggtgcgaggcggcgcgat 94

                                                                       
Query: 279 ggctgcggcagatggcgccggcggcggtggaggccctgccggacaggccgtccgaggagg 338
           ||||||||||||||| | ||||||||| |||| |||||||||| |||||||| |||||||
Sbjct: 95  ggctgcggcagatggaggcggcggcggcggagtccctgccggagaggccgtcggaggagg 154

                                                                       
Query: 339 acttctgcatggccctgcgcaacggcctcatcctctgcaaggtcctcaaccgcgtcaacc 398
           | |||||| |||| ||||||||||| ||| |||||||||| |||||||||| ||||||||
Sbjct: 155 agttctgcgtggcgctgcgcaacgggctcgtcctctgcaacgtcctcaaccacgtcaacc 214

                                                                       
Query: 399 ccggcgccattcccaaggtcgttgagaaccccattgacgcggtgcagtggtctgatgggg 458
           | |||||| | ||||||||||| ||||| |||||||  |||||||||| |||||||| ||
Sbjct: 215 cgggcgccgtccccaaggtcgtggagaatcccattgttgcggtgcagtcgtctgatgtgg 274

             
Query: 459 cg 460
           ||
Sbjct: 275 cg 276
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>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02,
             complete sequence
          Length = 167988

 Score =  198 bits (100), Expect = 1e-47
 Identities = 148/164 (90%)
 Strand = Plus / Minus

                                                                         
Query: 254   gcgcggaggtgcgaggcggcgcgatggctgcggcagatggcgccggcggcggtggaggcc 313
             |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| ||
Sbjct: 70445 gcgcggaggtgcgaggcggcgcgatggctgcggcagatggaggcggcggcggcggagtcc 70386

                                                                         
Query: 314   ctgccggacaggccgtccgaggaggacttctgcatggccctgcgcaacggcctcatcctc 373
             |||||||| |||||||| |||||||| |||||| |||| ||||||||||| ||| |||||
Sbjct: 70385 ctgccggagaggccgtcggaggaggagttctgcgtggcgctgcgcaacgggctcgtcctc 70326

                                                         
Query: 374   tgcaaggtcctcaaccgcgtcaaccccggcgccattcccaaggt 417
             ||||| |||||||||| ||||||||| |||||| | ||||||||
Sbjct: 70325 tgcaacgtcctcaaccacgtcaacccgggcgccgtccccaaggt 70282



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                          
Query: 219   aggggatggcgctgcgcaaggccgaggaa 247
             |||||||||||||||||||||||||||||
Sbjct: 71170 aggggatggcgctgcgcaaggccgaggaa 71142
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  198 bits (100), Expect = 1e-47
 Identities = 148/164 (90%)
 Strand = Plus / Minus

                                                                            
Query: 254      gcgcggaggtgcgaggcggcgcgatggctgcggcagatggcgccggcggcggtggaggcc 313
                |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| ||
Sbjct: 23353124 gcgcggaggtgcgaggcggcgcgatggctgcggcagatggaggcggcggcggcggagtcc 23353065

                                                                            
Query: 314      ctgccggacaggccgtccgaggaggacttctgcatggccctgcgcaacggcctcatcctc 373
                |||||||| |||||||| |||||||| |||||| |||| ||||||||||| ||| |||||
Sbjct: 23353064 ctgccggagaggccgtcggaggaggagttctgcgtggcgctgcgcaacgggctcgtcctc 23353005

                                                            
Query: 374      tgcaaggtcctcaaccgcgtcaaccccggcgccattcccaaggt 417
                ||||| |||||||||| ||||||||| |||||| | ||||||||
Sbjct: 23353004 tgcaacgtcctcaaccacgtcaacccgggcgccgtccccaaggt 23352961



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                             
Query: 219      aggggatggcgctgcgcaaggccgaggaa 247
                |||||||||||||||||||||||||||||
Sbjct: 23353849 aggggatggcgctgcgcaaggccgaggaa 23353821
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>ref|NM_114341.3| Arabidopsis thaliana ATP binding / microtubule motor AT3G44730
           mRNA, complete cds
          Length = 3264

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 350 gccctgcgcaacggcctcatcctctgcaaggtcctcaac 388
           ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 61  gccctccgcaacggcctcattctctgcaacgtcctcaac 99
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>gb|AC002534.1| Arabidopsis thaliana BAC T32N15 from chromosome III near 54 cM,
             complete sequence
          Length = 101371

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                    
Query: 350   gccctgcgcaacggcctcatcctctgcaaggtcctcaac 388
             ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 74451 gccctccgcaacggcctcattctctgcaacgtcctcaac 74413
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>gb|AF398149.4| Arabidopsis thaliana kinesin-like protein heavy chain (KP1) mRNA,
           complete cds
          Length = 3607

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 350 gccctgcgcaacggcctcatcctctgcaaggtcctcaac 388
           ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 208 gccctccgcaacggcctcattctctgcaacgtcctcaac 246
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>dbj|AP006125.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT43I02, TM0210a,
             complete sequence
          Length = 55211

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                         
Query: 329   tccgaggaggacttctgcatggccctgcgcaacggcctcatcctctgcaaggtcctcaac 388
             |||||||| || |||||| | || || ||||| |||||||| |||||||| |||||||||
Sbjct: 43873 tccgaggaagaattctgccttgcactccgcaatggcctcattctctgcaatgtcctcaac 43814

                           
Query: 389   cgcgtcaaccccgg 402
                |||||||||||
Sbjct: 43813 aaagtcaaccccgg 43800
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>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J17,
              complete sequence
          Length = 141598

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 267    aggcggcgcgatggctgcggcag 289
              |||||||||||||||||||||||
Sbjct: 137657 aggcggcgcgatggctgcggcag 137679
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 267      aggcggcgcgatggctgcggcag 289
                |||||||||||||||||||||||
Sbjct: 16497220 aggcggcgcgatggctgcggcag 16497242



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 264      gcgaggcggcgcgatggctgcggc 287
                |||||||| |||||||||||||||
Sbjct: 15676585 gcgaggcgacgcgatggctgcggc 15676562



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 289     gatggcgccggcggcggtgg 308
               ||||||||||||||||||||
Sbjct: 7996450 gatggcgccggcggcggtgg 7996431
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>gb|AY742795.1| Anguilla japonica luteinizing hormone receptor mRNA, partial cds
          Length = 1398

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 300 cggcggtggaggccctgccgga 321
           ||||||||||||||||||||||
Sbjct: 314 cggcggtggaggccctgccgga 335
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 296    ccggcggcggtggaggccctgccgga 321
              ||||||||||||| ||||||||||||
Sbjct: 780666 ccggcggcggtggtggccctgccgga 780691
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>gb|AC125325.4| Mus musculus BAC clone RP23-296K22 from chromosome 9, complete sequence
          Length = 156124

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   gcgccggcggcggtggaggcc 313
             |||||||||||||||||||||
Sbjct: 25527 gcgccggcggcggtggaggcc 25547
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 280     gctgcggcagatggcgccggc 300
               |||||||||||||||||||||
Sbjct: 3027932 gctgcggcagatggcgccggc 3027952
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>gb|AC145794.2| Xenopus tropicalis clone CH216-159D20, complete sequence
          Length = 159085

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    cctggctgcctcttcctcggg 33
             |||||||||||||||||||||
Sbjct: 24377 cctggctgcctcttcctcggg 24357
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 291      tggcgccggcggcggtggagg 311
                |||||||||||||||||||||
Sbjct: 20864884 tggcgccggcggcggtggagg 20864904
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>gb|AC156800.2| Mus musculus BAC clone RP23-366B23 from chromosome 9, complete sequence
          Length = 190619

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 293   gcgccggcggcggtggaggcc 313
             |||||||||||||||||||||
Sbjct: 90169 gcgccggcggcggtggaggcc 90149
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 350     gccctgcgcaacggcctcatc 370
               |||||||||||||||||||||
Sbjct: 1766547 gccctgcgcaacggcctcatc 1766527
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>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 101075

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 291   tggcgccggcggcggtggagg 311
             |||||||||||||||||||||
Sbjct: 66610 tggcgccggcggcggtggagg 66630
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 291      tggcgccggcggcggtggagg 311
                |||||||||||||||||||||
Sbjct: 20791098 tggcgccggcggcggtggagg 20791118
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>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 107819

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 291   tggcgccggcggcggtggagg 311
             |||||||||||||||||||||
Sbjct: 94111 tggcgccggcggcggtggagg 94091
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 285     ggcagatggcgccggcggcggtgg 308
               |||||| |||||||||||||||||
Sbjct: 3622350 ggcagacggcgccggcggcggtgg 3622373
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>ref|NM_123756.1| Arabidopsis thaliana disulfide oxidoreductase/ monooxygenase/
           oxidoreductase AT5G43890 mRNA, complete cds
          Length = 1275

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 21  cctcttcctcggggtcggag 40
           ||||||||||||||||||||
Sbjct: 413 cctcttcctcggggtcggag 432
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>gb|AC134342.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0053E01, complete sequence
          Length = 180426

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 264   gcgaggcggcgcgatggctgcggc 287
             |||||||| |||||||||||||||
Sbjct: 68689 gcgaggcgacgcgatggctgcggc 68666
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 233     cgcaaggccgaggaagccgc 252
               ||||||||||||||||||||
Sbjct: 3645287 cgcaaggccgaggaagccgc 3645306
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>gb|AC135420.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0060G17, complete sequence
          Length = 174949

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   gatggcgccggcggcggtgg 308
             ||||||||||||||||||||
Sbjct: 86041 gatggcgccggcggcggtgg 86022
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>gb|DQ159070.1| Arabidopsis thaliana putative flavin monooxygenase protein (YUCCA5)
           mRNA, complete cds
          Length = 1275

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 21  cctcttcctcggggtcggag 40
           ||||||||||||||||||||
Sbjct: 413 cctcttcctcggggtcggag 432
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 224     atggcgctgcgcaaggccga 243
               ||||||||||||||||||||
Sbjct: 2482871 atggcgctgcgcaaggccga 2482890
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>emb|AJ632303.1| Sus scrofa partial ICAM3 gene, TYK2, CDC37, PDE4A, KEAP1, EDG8 and
             APG4D genes and partial FLJ12949 gene
          Length = 185331

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   gagccgtgtgtctgtgatct 124
             ||||||||||||||||||||
Sbjct: 54907 gagccgtgtgtctgtgatct 54888
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 227     gcgctgcgcaaggccgagga 246
               ||||||||||||||||||||
Sbjct: 1609753 gcgctgcgcaaggccgagga 1609772
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>gb|AC120884.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0017D19, complete sequence
          Length = 142015

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 292   ggcgccggcggcggtggaggccct 315
             |||| |||||||||||||||||||
Sbjct: 44420 ggcggcggcggcggtggaggccct 44443
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>emb|AL445222.9| Human DNA sequence from clone RP11-356B19 on chromosome 9 Contains the 3'
              end of the gene for a novel protein (DKFZp761J1523), the
              SLC2A8 gene for solute carrier family 2, (facilitated
              glucose transporter) member 8 (glucose transporter
              X1)(GLUT8, GLUTX1), the ZNF79 gene for zinc finger protein
              79 (pT7), the RPL12 gene for ribosomal protein L12 (60S
              ribosomal protein L12), the gene for a novel protein, the
              gene for a novel protein (DKFZP434H0820)(FLJ13518,
              FLJ22151, FLJ22298) and four Cpg islands, complete sequence
          Length = 225370

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     cgcctggctgcctcttcctc 30
              ||||||||||||||||||||
Sbjct: 116939 cgcctggctgcctcttcctc 116958
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>gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0004B05, complete sequence
          Length = 121223

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 264   gcgaggcggcgcgatggctgcggc 287
             |||||||| |||||||||||||||
Sbjct: 50964 gcgaggcgacgcgatggctgcggc 50941
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>emb|X87822.1|MAFASGEN B.ammoniagenes FAS gene
          Length = 10520

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 291  tggcgccggcggcggtggag 310
            ||||||||||||||||||||
Sbjct: 6165 tggcgccggcggcggtggag 6184
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>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13
          Length = 349563

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cgcaaggccgaggaagccgc 252
              ||||||||||||||||||||
Sbjct: 182724 cgcaaggccgaggaagccgc 182743
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>gb|AC164166.2| Mus musculus BAC clone RP23-88C18 from chromosome 16, complete sequence
          Length = 140552

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    ggatggcgctgcgcaaggcc 241
              ||||||||||||||||||||
Sbjct: 117599 ggatggcgctgcgcaaggcc 117618
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>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14
          Length = 308050

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cgcaaggccgaggaagccgc 252
              ||||||||||||||||||||
Sbjct: 161975 cgcaaggccgaggaagccgc 161994
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 299    gcggcggtggaggccctgccggac 322
              ||||||| ||||||||||||||||
Sbjct: 407973 gcggcggcggaggccctgccggac 407950
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    agatcaacgacgaggggatg 226
              ||||||||||||||||||||
Sbjct: 132705 agatcaacgacgaggggatg 132724
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>gb|AF371372.1|AF371372 Cricetulus griseus hypothetical protein 1-2 mRNA, complete cds
          Length = 2794

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 414 aggtcgttgagaaccccatt 433
           ||||||||||||||||||||
Sbjct: 657 aggtcgttgagaaccccatt 676
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 292      ggcgccggcggcggtggaggccct 315
                |||| |||||||||||||||||||
Sbjct: 22613634 ggcggcggcggcggtggaggccct 22613657



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 264    gcgaggcggcgcgatggctgcggc 287
              |||||||| |||||||||||||||
Sbjct: 772671 gcgaggcgacgcgatggctgcggc 772648
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>emb|BX831848.1|CNS0A16P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH33ZE08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1483

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 21  cctcttcctcggggtcggag 40
           ||||||||||||||||||||
Sbjct: 573 cctcttcctcggggtcggag 592
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 297     cggcggcggtggaggccctg 316
               ||||||||||||||||||||
Sbjct: 6927134 cggcggcggtggaggccctg 6927115
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>dbj|AP000368.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F6B6
          Length = 37511

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    cctcttcctcggggtcggag 40
             ||||||||||||||||||||
Sbjct: 17324 cctcttcctcggggtcggag 17305
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>dbj|AK109971.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-C06, full
            insert sequence
          Length = 4856

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  tggcgctgcgcaaggccgag 244
            ||||||||||||||||||||
Sbjct: 3503 tggcgctgcgcaaggccgag 3522
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>dbj|AK068694.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162M01, full
           insert sequence
          Length = 3042

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 292 ggcgccggcggcggtggaggccct 315
           |||| |||||||||||||||||||
Sbjct: 132 ggcggcggcggcggtggaggccct 155
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>dbj|AB049187.1| Kitasatospora griseola dxr gene for 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase, complete cds
          Length = 1161

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 239 gccgaggaagccgctgcgcg 258
           ||||||||||||||||||||
Sbjct: 175 gccgaggaagccgctgcgcg 194
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 297     cggcggcggtggaggccctg 316
               ||||||||||||||||||||
Sbjct: 2221640 cggcggcggtggaggccctg 2221621
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 292      ggcgccggcggcggtggaggccct 315
                |||| |||||||||||||||||||
Sbjct: 22923545 ggcggcggcggcggtggaggccct 22923568



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 264    gcgaggcggcgcgatggctgcggc 287
              |||||||| |||||||||||||||
Sbjct: 772673 gcgaggcgacgcgatggctgcggc 772650
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>emb|CT030736.8| Mouse DNA sequence from clone RP23-396K21 on chromosome 16, complete
            sequence
          Length = 181320

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  ggatggcgctgcgcaaggcc 241
            ||||||||||||||||||||
Sbjct: 8726 ggatggcgctgcgcaaggcc 8745
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>gb|U82820.1|MTU82820 Mycobacterium tuberculosis 10 kDa iron regulated protein Irp10
           (IrpA) gene and metal transporting ATPase Mta72 (MtaA)
           gene, complete cds
          Length = 3009

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 233 cgcaaggccgaggaagccgc 252
           ||||||||||||||||||||
Sbjct: 584 cgcaaggccgaggaagccgc 603


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,241,257
Number of Sequences: 3902068
Number of extensions: 3241257
Number of successful extensions: 77309
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75456
Number of HSP's gapped (non-prelim): 1853
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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