ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29f05 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... | 158 | 7e-39 | 2 | VIME_MESAU (P02544) Vimentin | 31 | 1.8 | 3 | VIME_RAT (P31000) Vimentin | 31 | 1.8 | 4 | VIME_PANTR (Q5R1W8) Vimentin | 31 | 1.8 | 5 | VIME_MOUSE (P20152) Vimentin | 31 | 1.8 | 6 | VIME_MACFA (Q4R4X4) Vimentin | 31 | 1.8 | 7 | VIME_HUMAN (P08670) Vimentin | 31 | 1.8 | 8 | VIME_CRIGR (P48670) Vimentin (Fragment) | 31 | 1.8 | 9 | VIME_CERAE (P84198) Vimentin | 31 | 1.8 | 10 | VIMB_CARAU (P48673) Vimentin beta | 31 | 1.8 | 11 | VIME_CHICK (P09654) Vimentin | 30 | 3.0 | 12 | BSN_RAT (O88778) Bassoon protein | 30 | 3.9 | 13 | CEA_CITFR (P04480) Colicin-A | 29 | 5.1 | 14 | VIM4_XENLA (P24790) Vimentin 4 | 29 | 6.7 | 15 | VIME_CYPCA (Q92155) Vimentin | 29 | 6.7 | 16 | VIME_BOVIN (P48616) Vimentin | 28 | 8.7 | 17 | MED4_MOUSE (Q9CQA5) Mediator complex subunit 4 (Mediator of RNA ... | 28 | 8.7 |
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>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 158 bits (399), Expect = 7e-39 Identities = 81/100 (81%), Positives = 86/100 (86%) Frame = +3 Query: 162 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHFET 341 MTTDQPVISL LFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLH E+ Sbjct: 1 MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHSES 60 Query: 342 RERIRYSRDQLLDLRKITDISEQILRLQQEIEAELHGDDQ 461 RER+RYSRDQLLDLRKITD++EQILRLQQEIEAEL+GDDQ Sbjct: 61 RERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNGDDQ 100
>VIME_MESAU (P02544) Vimentin| Length = 464 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 306 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 446 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 140 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 191
>VIME_RAT (P31000) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 306 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 446 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_PANTR (Q5R1W8) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 306 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 446 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_MOUSE (P20152) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 306 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 446 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_MACFA (Q4R4X4) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 306 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 446 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEM 192
>VIME_HUMAN (P08670) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 306 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 446 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_CRIGR (P48670) Vimentin (Fragment)| Length = 448 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 306 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 446 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 124 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIIRLREKLQEEM 175
>VIME_CERAE (P84198) Vimentin| Length = 465 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 306 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 446 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEM 192
>VIMB_CARAU (P48673) Vimentin beta| Length = 450 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Frame = +3 Query: 306 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 446 G SR+GDL+ + +R DQL++ + ++ E I RL+Q+++ E+ Sbjct: 128 GSSRVGDLYEDEMRELRRQVDQLINEKASVEVDRDNLGENIERLRQKLQEEM 179
>VIME_CHICK (P09654) Vimentin| Length = 459 Score = 30.0 bits (66), Expect = 3.0 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +3 Query: 306 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 446 G SR+GDL+ E +R DQL + + ++ ++ I+RL+++++ E+ Sbjct: 135 GTSRLGDLYEEEMRDVRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEM 186
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 29.6 bits (65), Expect = 3.9 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 2/113 (1%) Frame = +3 Query: 111 PVDRAAAVPWSGSGPSAMTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAASGSGDFLRPH 290 P A P S + P A+ + PV APA +GD Sbjct: 2294 PAGGAREEPLSTTAPPAVIKEAPVAQ----------------APAPPPGQKPAGDAAAGS 2337 Query: 291 GGGASGVSRIGDLHFETRERIRYSRDQLLDLRKITDISEQI--LRLQQEIEAE 443 G G G + +R R ++QLL L + E++ LRLQ+E+E E Sbjct: 2338 GSGVLGRPVMEKEEASQEDRQRKQQEQLLQLERERVELEKLRQLRLQEELERE 2390
>CEA_CITFR (P04480) Colicin-A| Length = 592 Score = 29.3 bits (64), Expect = 5.1 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -2 Query: 181 TGWSVVMAEGPEPDQGTAAARSTGNRRGAGEEIAEES 71 TGWS GPEP G + S G+ RG + ES Sbjct: 13 TGWSSERGSGPEPG-GGSHGNSGGHDRGDSSNVGNES 48
>VIM4_XENLA (P24790) Vimentin 4| Length = 463 Score = 28.9 bits (63), Expect = 6.7 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Frame = +3 Query: 306 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 446 G SRIGDL+ E IR DQ ++ + ++ + + RL+++++ E+ Sbjct: 136 GTSRIGDLYEEEMREIRRQLDQAINEKARVEVDRDNLGDDLQRLREKLQDEM 187
>VIME_CYPCA (Q92155) Vimentin| Length = 455 Score = 28.9 bits (63), Expect = 6.7 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Frame = +3 Query: 306 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 446 G SR+GDL+ + +R DQL + + ++ E I RL+++++ E+ Sbjct: 133 GSSRVGDLYQDEMRELRRQVDQLTNEKATVEVDRDNLGEDIERLKEKLQEEM 184
>VIME_BOVIN (P48616) Vimentin| Length = 465 Score = 28.5 bits (62), Expect = 8.7 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Frame = +3 Query: 306 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEQILRLQQEIEAEL 446 G SR+G L+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGQLYEEEMRELRRQVDQLTNDKARAEVERHNLAEDIMRLREKLQEEM 192
>MED4_MOUSE (Q9CQA5) Mediator complex subunit 4 (Mediator of RNA polymerase II| transcription subunit 4) Length = 270 Score = 28.5 bits (62), Expect = 8.7 Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 9/77 (11%) Frame = +3 Query: 252 VAASGSGDFLRPHGGGASGVSRIGDLHFETRERIRYSRDQLLDL-RKITDI-----SEQI 413 +AAS SG+ + GG SG++ +G TRER+ + + L L R++ ++ ++++ Sbjct: 1 MAASSSGEKEKERMGGVSGMAGLG----STRERLLSALEDLEVLSRELIEMLAISRNQKL 56 Query: 414 LRLQQE---IEAELHGD 455 L+L++E +E +H D Sbjct: 57 LQLEEENQVLELLIHRD 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,961,302 Number of Sequences: 219361 Number of extensions: 820988 Number of successful extensions: 3163 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3029 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3163 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
