>PRP8_MOUSE (Q99PV0) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)|
          Length = 2335

 Score =  311 bits (796), Expect = 7e-85
 Identities = 142/147 (96%), Positives = 145/147 (98%)
 Frame = +3

Query: 3    RYIQPWESEFIDSQRVWVEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHT 182
            RYIQPWESEFIDSQRVW EYALKRQEA +QNRRLTLEDLEDSWDRGIPRINTLFQKDRHT
Sbjct: 1370 RYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHT 1429

Query: 183  LAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTL 362
            LAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTD+IQALGGVEGILEHTL
Sbjct: 1430 LAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTL 1489

Query: 363  FKGTYFPTWEGLFWEKASGFEESMKYK 443
            FKGTYFPTWEGLFWEKASGFEESMK+K
Sbjct: 1490 FKGTYFPTWEGLFWEKASGFEESMKWK 1516

>PRP8_HUMAN (Q6P2Q9) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)|
            (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220)
          Length = 2335

 Score =  311 bits (796), Expect = 7e-85
 Identities = 142/147 (96%), Positives = 145/147 (98%)
 Frame = +3

Query: 3    RYIQPWESEFIDSQRVWVEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHT 182
            RYIQPWESEFIDSQRVW EYALKRQEA +QNRRLTLEDLEDSWDRGIPRINTLFQKDRHT
Sbjct: 1370 RYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHT 1429

Query: 183  LAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTL 362
            LAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTD+IQALGGVEGILEHTL
Sbjct: 1430 LAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTL 1489

Query: 363  FKGTYFPTWEGLFWEKASGFEESMKYK 443
            FKGTYFPTWEGLFWEKASGFEESMK+K
Sbjct: 1490 FKGTYFPTWEGLFWEKASGFEESMKWK 1516

>PRP8_CAEEL (P34369) Pre-mRNA-splicing factor 8 homolog|
          Length = 2329

 Score =  300 bits (769), Expect = 9e-82
 Identities = 133/147 (90%), Positives = 143/147 (97%)
 Frame = +3

Query: 3    RYIQPWESEFIDSQRVWVEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHT 182
            RYIQPWE+EF+DS RVW EYALKRQEA +QNRRLTLEDL+DSWDRGIPRINTLFQKDRHT
Sbjct: 1363 RYIQPWEAEFVDSVRVWAEYALKRQEANAQNRRLTLEDLDDSWDRGIPRINTLFQKDRHT 1422

Query: 183  LAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTL 362
            LAYDKGWRVRT+FK YQ+LKQNPFWWTHQRHDGKLWNLNNYRTD+IQALGGVEGILEHTL
Sbjct: 1423 LAYDKGWRVRTEFKAYQILKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTL 1482

Query: 363  FKGTYFPTWEGLFWEKASGFEESMKYK 443
            F+GTYFPTWEGLFWE+ASGFEESMK+K
Sbjct: 1483 FRGTYFPTWEGLFWERASGFEESMKFK 1509

>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8|
          Length = 2413

 Score =  246 bits (628), Expect = 2e-65
 Identities = 110/147 (74%), Positives = 127/147 (86%)
 Frame = +3

Query: 3    RYIQPWESEFIDSQRVWVEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHT 182
            RYI  WE+EF+DSQRVW EYA KRQEA  QNRRL  E+LE SWDRGIPRI+TLFQ+DRHT
Sbjct: 1442 RYITTWENEFLDSQRVWAEYATKRQEAIQQNRRLAFEELEGSWDRGIPRISTLFQRDRHT 1501

Query: 183  LAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTL 362
            LAYD+G R+R +FKQY + + +PFWWT+  HDGKLWNLN YRTDVIQALGG+E ILEHTL
Sbjct: 1502 LAYDRGHRIRREFKQYSLERNSPFWWTNSHHDGKLWNLNAYRTDVIQALGGIETILEHTL 1561

Query: 363  FKGTYFPTWEGLFWEKASGFEESMKYK 443
            FKGT F +WEGLFWEKASGFE+SM++K
Sbjct: 1562 FKGTGFNSWEGLFWEKASGFEDSMQFK 1588

>POLG_PEV9U (O41174) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2167

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 288  ITSHHAADVSTRMGSVSALDTA*SLSAPSTLCRRPKCGGLFGIKC*YGV 142
            +TS   A + +R+ S + LDT    S PS +     CGG+  ++C +GV
Sbjct: 908  VTSRVQASIGSRLVSTTQLDTRPICSLPSGISEPGDCGGI--LRCQHGV 954

>TLR8_MOUSE (P58682) Toll-like receptor 8 precursor|
          Length = 1032

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
 Frame = +3

Query: 51   WVEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRH--------TLAYDKGWR 206
            WV   L+    +S+++ + L   E  WD G+P I+ L Q            T  Y K W 
Sbjct: 887  WVINELRYHLEESEDKSVLLCLEERDWDPGLPIIDNLMQSINQSKKTIFVLTKKYAKSWN 946

Query: 207  VRTDF 221
             +T F
Sbjct: 947  FKTAF 951

>BACA_BACLI (O68006) Bacitracin synthetase 1 (BA1) [Includes: ATP-dependent|
            isoleucine adenylase (IleA) (Isoleucine activase);
            ATP-dependent cysteine adenylase (CysA) (Cysteine
            activase); ATP-dependent leucine adenylase (LeuA)
            (Leucine activase); ATP-depe
          Length = 5255

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +3

Query: 24   SEFIDSQRVWVEYAL-----KRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLA 188
            SE  D  R+ VEY+      +R E  S++    LE   D  D  I +I+ L + +RH + 
Sbjct: 3076 SEAADGLRLEVEYSTTLFNKERMERLSEHLISLLEQAADHPDIAINQIDVLTKGERHRVL 3135

Query: 189  YD 194
            YD
Sbjct: 3136 YD 3137

>SWI6_SCHPO (P40381) Chromatin-associated protein swi6|
          Length = 328

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 93  NRRLTLEDLE--DSWDRGIPRINTLFQKDRHTLAYDKGWR 206
           NR LT++ +E  DSW+  +  I+T+ +KD  TL     W+
Sbjct: 255 NRELTVKQVENYDSWEDLVSSIDTIERKDDGTLEIYLTWK 294


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,647,314
Number of Sequences: 219361
Number of extensions: 1595310
Number of successful extensions: 4110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4109
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)