>AL9A1_HUMAN (P49189) 4-trimethylaminobutyraldehyde dehydrogenase (EC 1.2.1.47)|
           (TMABADH) (Aldehyde dehydrogenase 9A1) (EC 1.2.1.3)
           (Aldehyde dehydrogenase E3 isozyme)
           (Gamma-aminobutyraldehyde dehydrogenase) (EC 1.2.1.19)
           (R-aminobutyraldehyde dehydrogen
          Length = 494

 Score = 35.8 bits (81), Expect = 0.058
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = -3

Query: 211 CLSLFIGFSLSVAGDLAAKPPGSFGAKRLAMAPNGLPVDIGAASFPESVCS 59
           CL  + G + S+AG+    P GSFG  R    P G+ V IGA ++P  + S
Sbjct: 116 CLEYYAGLAASMAGEHIQLPGGSFGYTR--REPLGVCVGIGAWNYPFQIAS 164

>AL9A1_PONPY (Q5R8A4) 4-trimethylaminobutyraldehyde dehydrogenase (EC 1.2.1.47)|
           (TMABADH) (Aldehyde dehydrogenase 9A1) (EC 1.2.1.3)
          Length = 494

 Score = 35.4 bits (80), Expect = 0.075
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = -3

Query: 211 CLSLFIGFSLSVAGDLAAKPPGSFGAKRLAMAPNGLPVDIGAASFPESVCS 59
           CL  + G + S+AG+    P GSFG  R    P G+ V IGA ++P  + S
Sbjct: 116 CLEYYAGLAASMAGEHIQLPGGSFGYTR--REPLGVCVGIGAWNYPFQITS 164

>AL9A1_MOUSE (Q9JLJ2) 4-trimethylaminobutyraldehyde dehydrogenase (EC 1.2.1.47)|
           (TMABADH) (Aldehyde dehydrogenase 9A1) (EC 1.2.1.3)
          Length = 494

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -3

Query: 211 CLSLFIGFSLSVAGDLAAKPPGSFGAKRLAMAPNGLPVDIGAASFP 74
           CL  + G + S+AG+    P GSFG  R    P G+ V IGA ++P
Sbjct: 116 CLEYYAGLAASMAGEHIQLPGGSFGYTR--REPLGVCVGIGAWNYP 159

>AL9A1_RAT (Q9JLJ3) 4-trimethylaminobutyraldehyde dehydrogenase (EC 1.2.1.47)|
           (TMABADH) (Aldehyde dehydrogenase 9A1) (EC 1.2.1.3)
          Length = 494

 Score = 33.1 bits (74), Expect = 0.37
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -3

Query: 211 CLSLFIGFSLSVAGDLAAKPPGSFGAKRLAMAPNGLPVDIGAASFP 74
           CL  + G + S+AG+    P GSFG  R    P G+ + IGA ++P
Sbjct: 116 CLEYYAGLAASMAGEHIQLPGGSFGYTR--REPLGVCLGIGAWNYP 159

>RPA1_RAT (O54889) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
           (RNA polymerase I 194 kDa subunit) (RPA194)
          Length = 1716

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -3

Query: 301 INSC*KITGGLAT*STSGRDHLCSTGGLTACLSLFIGFSLSVAGDLAAKPPGSFGAKRL 125
           ++ C +I GG     TSGR   C     TA L L+ GF+L V  D+  KP      +R+
Sbjct: 769 VHCCYEIYGG----ETSGRVLTCLARLFTAYLQLYRGFTLGVE-DILVKPNADVMRQRI 822

>TF2AA_DROME (P52654) Transcription initiation factor IIA subunit 1 (dTFIIA-L)|
           [Contains: Transcription initiation factor IIA alpha
           chain (TFIIA p30 subunit); Transcription initiation
           factor IIA beta chain (TFIIA p20 subunit)]
          Length = 366

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 117 AMASLFAPKLPGGLAARSPATDKLKPIKRERQAVRPPVEHKWSLPEVDQ 263
           +M+SL   K   G+AA S   + L PIK+E  +  PP  H  S   + Q
Sbjct: 104 SMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAASMMQ 152

>RPA1_MOUSE (O35134) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
           (RNA polymerase I 194 kDa subunit) (RPA194)
          Length = 1717

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -3

Query: 301 INSC*KITGGLAT*STSGRDHLCSTGGLTACLSLFIGFSLSVAGDLAAKPPGSFGAKRL 125
           ++ C +I GG     TSGR   C     TA L L+ GF+L V  D+  KP      +R+
Sbjct: 769 VHCCYEIYGG----ETSGRVLTCLARLFTAYLQLYRGFTLGVE-DILVKPNADVVRQRI 822

>INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)|
          Length = 1708

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 21/80 (26%), Positives = 31/80 (38%)
 Frame = +3

Query: 27  PRAVREIEAVFEHTLSGNEAAPMSTGSPFGAMASLFAPKLPGGLAARSPATDKLKPIKRE 206
           PR  +   A    + +   + P    SP    +      LPG     +PA   L P+   
Sbjct: 175 PRETKHARAADPMSFASILSGPTEETSPIKQPS--LPEALPGPATTITPAPPTLAPVPAR 232

Query: 207 RQAVRPPVEHKWSLPEVDQV 266
           R+   PPV H  +LP   Q+
Sbjct: 233 RRLTPPPVTH--ALPPTSQL 250

>C71C4_MAIZE (Q43257) Cytochrome P450 71C4 (EC 1.14.-.-) (Benzoxazineless 2)|
          Length = 538

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
 Frame = +3

Query: 27  PRAVREIEAVFEHTLSGNEAAPMSTGSPFGAMASLFAPKLPGGLAARSPATDKL---KPI 197
           PR    +   ++H  S    + +S    +GA  S FAP       AR   T  L     +
Sbjct: 119 PRVAEAVLRTYDHVFSSRPRSLVSDIIMYGATDSCFAPYGDHFRKARKLVTVHLLNASKV 178

Query: 198 KRERQAVRPPVEHKWSLPEVDQVAKPPVIFQHELIQSFSINMFCK 332
           + +R A    V            A+ PV    EL+ SF  N+ C+
Sbjct: 179 RSQRPAREEEVRGALDRVRRAAAAREPVDMS-ELLHSFVNNLVCR 222

>FHLA_ECOLI (P19323) Formate hydrogenlyase transcriptional activator|
          Length = 692

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
 Frame = +3

Query: 255 VDQVAKPPVIFQHELIQSFSINMFCKIPVNQV---------RTYKDLRSVLMKRIFLSAL 407
           +D+V   P+  Q +L++      F ++  N++          T +DL+ ++  R F S L
Sbjct: 479 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 538

Query: 408 HFRINTRYKSSXPPLHQ 458
           ++R+N  +    PPL +
Sbjct: 539 YYRLNV-FPIHLPPLRE 554

>RPGR_CANFA (Q9N1T2) X-linked retinitis pigmentosa GTPase regulator|
          Length = 1003

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 105 SPFGAMASLFAPKLPGGLAARSPATDKLKPIKRERQAVRPPVEHKWSLPEVDQVAKPPVI 284
           S F A  SL    L  G+      + +++  +RER+      +   +LP +D +  PPV 
Sbjct: 383 SCFSAATSLSLSNLSSGIVLHQTLSARVR--RREREKSPDSFQMTRTLPPIDGIPMPPVC 440

Query: 285 F 287
           F
Sbjct: 441 F 441

>CMGA_BOVIN (P05059) Chromogranin A precursor (CgA) (Pituitary secretory|
           protein I) (SP-I) [Contains: Vasostatin-1; Chromostatin;
           Chromacin; Pancreastatin; WE-14; Catestatin]
          Length = 449

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 24/75 (32%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
 Frame = +3

Query: 75  GNEAAPMSTGSPFGAMASLFAPKLPGGLAARSPATDKLKPIKRE--------RQAVRPPV 230
           G E    S   P   +ASL +PK PG  A          P  RE        RQ  R   
Sbjct: 171 GEEEEAPSNAHP---LASLPSPKYPGPQAKEDSEGPSQGPASREKGLSAEQGRQTEREEE 227

Query: 231 EHKWSLPEVDQVAKP 275
           E KW   E  + A P
Sbjct: 228 EEKWEEAEAREKAVP 242

>Y292_MYCPN (P75485) Hypothetical RNA pseudouridine synthase MG209 homolog (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase) (H10_orf309)
          Length = 309

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 276 PVIFQHELIQSFS-INMFCKIPVNQVRTYKDLRSVLMKRIFLSALHFRINTRYKSSXPPL 452
           PV   H L +  S + M  K   + +   K L+  +MKR +L+ +HF +++   +   PL
Sbjct: 123 PVFLVHRLDRDTSGVIMLAKNQSSLLHLQKQLQQRVMKRYYLALVHFPLDSLSGTISAPL 182

Query: 453 HQL 461
            ++
Sbjct: 183 ERV 185

>RPA1_HUMAN (O95602) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
           (RNA polymerase I 194 kDa subunit) (RPA194)
          Length = 1717

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -3

Query: 301 INSC*KITGGLAT*STSGRDHLCSTGGLTACLSLFIGFSLSVAGDLAAKPPGSFGAKRL 125
           ++ C +I GG     TSG+   C     TA L L+ GF+L V  D+  KP      +R+
Sbjct: 762 VHCCYEIYGG----ETSGKVLTCLARLFTAYLQLYRGFTLGVE-DILVKPKRDVKRQRI 815

>ELK3_HUMAN (P41970) ETS domain-containing protein Elk-3 (ETS-related protein|
           NET) (ETS-related protein ERP) (SRF accessory protein 2)
           (SAP-2)
          Length = 407

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
 Frame = +3

Query: 84  AAPMSTGSPFGAMASLFAPKLPGG-------LAARSPATDKLKPIKRE--RQAVRPPVEH 236
           AA +S+ SPF + +   +PK P         L A    +D L+P+      +   P +  
Sbjct: 230 AASISSASPFSSRSPSLSPKSPLPSEHRSLFLEAACHDSDSLEPLNLSSGSKTKSPSLPP 289

Query: 237 KWSLPEVDQVAKPPVIFQHELIQSFSIN 320
           K   P+  +++ PP++     I S ++N
Sbjct: 290 KAKKPKGLEISAPPLVLSGTDIGSIALN 317

>DAPA_PSEAE (Q9I4W3) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 292

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 117 AMASLFAPKLPGGLAARSPATDKLKPIKRERQAVRPPVEHKWSLPEV 257
           AM+ L A  + G  AA     D+L P+ +       P+  KW+L E+
Sbjct: 213 AMSDLCAAAMRGDAAAARAINDRLMPLHKALFIESNPIPVKWALHEM 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,595,909
Number of Sequences: 219361
Number of extensions: 1434581
Number of successful extensions: 4181
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4180
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)