Clone Name | bastl29e06 |
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Clone Library Name | barley_pub |
>dbj|AK066566.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073O18, full insert sequence Length = 3520 Score = 285 bits (144), Expect = 6e-74 Identities = 255/291 (87%), Gaps = 1/291 (0%) Strand = Plus / Plus Query: 180 gataaactaaaacctataaaaagggaaagacaggcagtcagacctcctgtagagcataaa 239 |||||| |||| ||| | |||||||||||||||||| | || || |||||||| ||||| Sbjct: 586 gataaaataaagcctgtgaaaagggaaagacaggcaattaggccacctgtagaacataag 645 Query: 240 tggtctcttcctgaggttgatcaggttgccaagcctccagtgatttttcaacatgagttg 299 ||||||||||||| |||| |||| |||||||||||||| |||||||||||||| ||| Sbjct: 646 tggtctcttcctggagttgcccaggatgccaagcctccagcaatttttcaacatgaattg 705 Query: 300 attcagagtttctctatcaacatgttctgtaagatacccgttaaccaagttcgtacatac 359 || ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 706 atccagagtttctcaatcaacatgttctgtaagatacctgttaaccaagttcagacatat 765 Query: 360 aaagacctgcgcagtgtactgatgaaacggatatttttatctgctctgcacttcagaatc 419 ||||||||||| ||||| |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 766 aaagacctgcgaagtgtcctgatgaagcggatatttttatctgctctgcattttcgaatc 825 Query: 420 aatacacgatataagagctcanatcctcc-cttacatcagttgagctggat 469 |||||| |||||||||||||| ||||||| ||||||| || ||||||||| Sbjct: 826 aatacaagatataagagctcaaatcctccttttacatccgtcgagctggat 876 Score = 93.7 bits (47), Expect = 5e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 104 aagtccatttggtgccatggcaagcctctttgcaccaaagctaccaggtggcttggccgc 163 ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| || Sbjct: 495 aagtccatttggtgctatggcaagcctttttgcaccaaagctacctggtggcttggctgc 554 Query: 164 aag 166 ||| Sbjct: 555 aag 557
>dbj|AK063424.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-C08, full insert sequence Length = 2563 Score = 285 bits (144), Expect = 6e-74 Identities = 255/291 (87%), Gaps = 1/291 (0%) Strand = Plus / Plus Query: 180 gataaactaaaacctataaaaagggaaagacaggcagtcagacctcctgtagagcataaa 239 |||||| |||| ||| | |||||||||||||||||| | || || |||||||| ||||| Sbjct: 325 gataaaataaagcctgtgaaaagggaaagacaggcaattaggccacctgtagaacataag 384 Query: 240 tggtctcttcctgaggttgatcaggttgccaagcctccagtgatttttcaacatgagttg 299 ||||||||||||| |||| |||| |||||||||||||| |||||||||||||| ||| Sbjct: 385 tggtctcttcctggagttgcccaggatgccaagcctccagcaatttttcaacatgaattg 444 Query: 300 attcagagtttctctatcaacatgttctgtaagatacccgttaaccaagttcgtacatac 359 || ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 445 atccagagtttctcaatcaacatgttctgtaagatacctgttaaccaagttcagacatat 504 Query: 360 aaagacctgcgcagtgtactgatgaaacggatatttttatctgctctgcacttcagaatc 419 ||||||||||| ||||| |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 505 aaagacctgcgaagtgtcctgatgaagcggatatttttatctgctctgcattttcgaatc 564 Query: 420 aatacacgatataagagctcanatcctcc-cttacatcagttgagctggat 469 |||||| |||||||||||||| ||||||| ||||||| || ||||||||| Sbjct: 565 aatacaagatataagagctcaaatcctccttttacatccgtcgagctggat 615 Score = 182 bits (92), Expect = 7e-43 Identities = 146/164 (89%) Strand = Plus / Plus Query: 3 ctggtaggagaaattgatgatattcccagagcagtgcgggagatagaggctgtgttcgaa 62 ||||||||||| || |||||||||||||||||| | || || |||||||||||||| ||| Sbjct: 133 ctggtaggagagatcgatgatattcccagagcaatacgagaaatagaggctgtgtttgaa 192 Query: 63 catacactttcaggaaacgaagcagcccctatgtcgactggaagtccatttggtgccatg 122 ||||||||| ||| | ||||||||||||||||| |||| ||||||||||||||| ||| Sbjct: 193 catacacttccagaaggtgaagcagcccctatgtcaactgcaagtccatttggtgctatg 252 Query: 123 gcaagcctctttgcaccaaagctaccaggtggcttggccgcaag 166 |||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct: 253 gcaagcctttttgcaccaaagctacctggtggcttggctgcaag 296
>dbj|AK059029.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C01, full insert sequence Length = 1481 Score = 285 bits (144), Expect = 6e-74 Identities = 255/291 (87%), Gaps = 1/291 (0%) Strand = Plus / Plus Query: 180 gataaactaaaacctataaaaagggaaagacaggcagtcagacctcctgtagagcataaa 239 |||||| |||| ||| | |||||||||||||||||| | || || |||||||| ||||| Sbjct: 504 gataaaataaagcctgtgaaaagggaaagacaggcaattaggccacctgtagaacataag 563 Query: 240 tggtctcttcctgaggttgatcaggttgccaagcctccagtgatttttcaacatgagttg 299 ||||||||||||| |||| |||| |||||||||||||| |||||||||||||| ||| Sbjct: 564 tggtctcttcctggagttgcccaggatgccaagcctccagcaatttttcaacatgaattg 623 Query: 300 attcagagtttctctatcaacatgttctgtaagatacccgttaaccaagttcgtacatac 359 || ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 624 atccagagtttctcaatcaacatgttctgtaagatacctgttaaccaagttcagacatat 683 Query: 360 aaagacctgcgcagtgtactgatgaaacggatatttttatctgctctgcacttcagaatc 419 ||||||||||| ||||| |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 684 aaagacctgcgaagtgtcctgatgaagcggatatttttatctgctctgcattttcgaatc 743 Query: 420 aatacacgatataagagctcanatcctcc-cttacatcagttgagctggat 469 |||||| |||||||||||||| ||||||| ||||||| || ||||||||| Sbjct: 744 aatacaagatataagagctcaaatcctccttttacatccgtcgagctggat 794 Score = 190 bits (96), Expect = 3e-45 Identities = 147/164 (89%) Strand = Plus / Plus Query: 3 ctggtaggagaaattgatgatattcccagagcagtgcgggagatagaggctgtgttcgaa 62 ||||||||||| || |||||||||||||||||| |||| || |||||||||||||| ||| Sbjct: 312 ctggtaggagagatcgatgatattcccagagcaatgcgagaaatagaggctgtgtttgaa 371 Query: 63 catacactttcaggaaacgaagcagcccctatgtcgactggaagtccatttggtgccatg 122 ||||||||| ||| | ||||||||||||||||| |||| ||||||||||||||| ||| Sbjct: 372 catacacttccagaaggtgaagcagcccctatgtcaactgcaagtccatttggtgctatg 431 Query: 123 gcaagcctctttgcaccaaagctaccaggtggcttggccgcaag 166 |||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct: 432 gcaagcctttttgcaccaaagctacctggtggcttggctgcaag 475
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 145 bits (73), Expect = 2e-31 Identities = 133/153 (86%) Strand = Plus / Minus Query: 180 gataaactaaaacctataaaaagggaaagacaggcagtcagacctcctgtagagcataaa 239 |||||| |||| ||| | |||||||||||||||||| | || || |||||||| ||||| Sbjct: 24823738 gataaaataaagcctgtgaaaagggaaagacaggcaattaggccacctgtagaacataag 24823679 Query: 240 tggtctcttcctgaggttgatcaggttgccaagcctccagtgatttttcaacatgagttg 299 ||||||||||||| |||| |||| |||||||||||||| |||||||||||||| ||| Sbjct: 24823678 tggtctcttcctggagttgcccaggatgccaagcctccagcaatttttcaacatgaattg 24823619 Query: 300 attcagagtttctctatcaacatgttctgtaag 332 || ||||||||||| |||||||||||||||||| Sbjct: 24823618 atccagagtttctcaatcaacatgttctgtaag 24823586 Score = 139 bits (70), Expect = 9e-30 Identities = 106/118 (89%) Strand = Plus / Minus Query: 49 aggctgtgttcgaacatacactttcaggaaacgaagcagcccctatgtcgactggaagtc 108 |||||||||| |||||||||||| ||| | ||||||||||||||||| |||| ||||| Sbjct: 24823884 aggctgtgtttgaacatacacttccagaaggtgaagcagcccctatgtcaactgcaagtc 24823825 Query: 109 catttggtgccatggcaagcctctttgcaccaaagctaccaggtggcttggccgcaag 166 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct: 24823824 catttggtgctatggcaagcctttttgcaccaaagctacctggtggcttggctgcaag 24823767 Score = 119 bits (60), Expect = 9e-24 Identities = 93/104 (89%) Strand = Plus / Minus Query: 331 agatacccgttaaccaagttcgtacatacaaagacctgcgcagtgtactgatgaaacgga 390 ||||||| ||||||||||||| ||||| ||||||||||| ||||| |||||||| |||| Sbjct: 24823098 agatacctgttaaccaagttcagacatataaagacctgcgaagtgtcctgatgaagcgga 24823039 Query: 391 tatttttatctgctctgcacttcagaatcaatacacgatataag 434 ||||||||||||||||||| || ||||||||||| |||||||| Sbjct: 24823038 tatttttatctgctctgcattttcgaatcaatacaagatataag 24822995 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 3 ctggtaggagaaattgatgatattcccagagca 35 ||||||||||| || |||||||||||||||||| Sbjct: 24824026 ctggtaggagagatcgatgatattcccagagca 24823994
>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0072A21 Length = 158287 Score = 145 bits (73), Expect = 2e-31 Identities = 133/153 (86%) Strand = Plus / Minus Query: 180 gataaactaaaacctataaaaagggaaagacaggcagtcagacctcctgtagagcataaa 239 |||||| |||| ||| | |||||||||||||||||| | || || |||||||| ||||| Sbjct: 34821 gataaaataaagcctgtgaaaagggaaagacaggcaattaggccacctgtagaacataag 34762 Query: 240 tggtctcttcctgaggttgatcaggttgccaagcctccagtgatttttcaacatgagttg 299 ||||||||||||| |||| |||| |||||||||||||| |||||||||||||| ||| Sbjct: 34761 tggtctcttcctggagttgcccaggatgccaagcctccagcaatttttcaacatgaattg 34702 Query: 300 attcagagtttctctatcaacatgttctgtaag 332 || ||||||||||| |||||||||||||||||| Sbjct: 34701 atccagagtttctcaatcaacatgttctgtaag 34669 Score = 139 bits (70), Expect = 9e-30 Identities = 106/118 (89%) Strand = Plus / Minus Query: 49 aggctgtgttcgaacatacactttcaggaaacgaagcagcccctatgtcgactggaagtc 108 |||||||||| |||||||||||| ||| | ||||||||||||||||| |||| ||||| Sbjct: 34967 aggctgtgtttgaacatacacttccagaaggtgaagcagcccctatgtcaactgcaagtc 34908 Query: 109 catttggtgccatggcaagcctctttgcaccaaagctaccaggtggcttggccgcaag 166 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct: 34907 catttggtgctatggcaagcctttttgcaccaaagctacctggtggcttggctgcaag 34850 Score = 119 bits (60), Expect = 9e-24 Identities = 93/104 (89%) Strand = Plus / Minus Query: 331 agatacccgttaaccaagttcgtacatacaaagacctgcgcagtgtactgatgaaacgga 390 ||||||| ||||||||||||| ||||| ||||||||||| ||||| |||||||| |||| Sbjct: 34181 agatacctgttaaccaagttcagacatataaagacctgcgaagtgtcctgatgaagcgga 34122 Query: 391 tatttttatctgctctgcacttcagaatcaatacacgatataag 434 ||||||||||||||||||| || ||||||||||| |||||||| Sbjct: 34121 tatttttatctgctctgcattttcgaatcaatacaagatataag 34078 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 3 ctggtaggagaaattgatgatattcccagagca 35 ||||||||||| || |||||||||||||||||| Sbjct: 35109 ctggtaggagagatcgatgatattcccagagca 35077
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0029G06 Length = 169711 Score = 145 bits (73), Expect = 2e-31 Identities = 133/153 (86%) Strand = Plus / Minus Query: 180 gataaactaaaacctataaaaagggaaagacaggcagtcagacctcctgtagagcataaa 239 |||||| |||| ||| | |||||||||||||||||| | || || |||||||| ||||| Sbjct: 157419 gataaaataaagcctgtgaaaagggaaagacaggcaattaggccacctgtagaacataag 157360 Query: 240 tggtctcttcctgaggttgatcaggttgccaagcctccagtgatttttcaacatgagttg 299 ||||||||||||| |||| |||| |||||||||||||| |||||||||||||| ||| Sbjct: 157359 tggtctcttcctggagttgcccaggatgccaagcctccagcaatttttcaacatgaattg 157300 Query: 300 attcagagtttctctatcaacatgttctgtaag 332 || ||||||||||| |||||||||||||||||| Sbjct: 157299 atccagagtttctcaatcaacatgttctgtaag 157267 Score = 139 bits (70), Expect = 9e-30 Identities = 106/118 (89%) Strand = Plus / Minus Query: 49 aggctgtgttcgaacatacactttcaggaaacgaagcagcccctatgtcgactggaagtc 108 |||||||||| |||||||||||| ||| | ||||||||||||||||| |||| ||||| Sbjct: 157565 aggctgtgtttgaacatacacttccagaaggtgaagcagcccctatgtcaactgcaagtc 157506 Query: 109 catttggtgccatggcaagcctctttgcaccaaagctaccaggtggcttggccgcaag 166 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct: 157505 catttggtgctatggcaagcctttttgcaccaaagctacctggtggcttggctgcaag 157448 Score = 119 bits (60), Expect = 9e-24 Identities = 93/104 (89%) Strand = Plus / Minus Query: 331 agatacccgttaaccaagttcgtacatacaaagacctgcgcagtgtactgatgaaacgga 390 ||||||| ||||||||||||| ||||| ||||||||||| ||||| |||||||| |||| Sbjct: 156779 agatacctgttaaccaagttcagacatataaagacctgcgaagtgtcctgatgaagcgga 156720 Query: 391 tatttttatctgctctgcacttcagaatcaatacacgatataag 434 ||||||||||||||||||| || ||||||||||| |||||||| Sbjct: 156719 tatttttatctgctctgcattttcgaatcaatacaagatataag 156676 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 3 ctggtaggagaaattgatgatattcccagagca 35 ||||||||||| || |||||||||||||||||| Sbjct: 157707 ctggtaggagagatcgatgatattcccagagca 157675
>gb|AC152397.6| Mus musculus chromosome 18, clone RP23-307D12, complete sequence Length = 218647 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 agggaaagacaggcagtcaga 221 ||||||||||||||||||||| Sbjct: 115907 agggaaagacaggcagtcaga 115927
>gb|AC158667.8| Mus musculus 6 BAC RP23-83P5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 234055 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 taaaaagggaaagacaggcag 216 ||||||||||||||||||||| Sbjct: 46406 taaaaagggaaagacaggcag 46386
>gb|AE002131.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 32 of 59 of the complete genome Length = 11306 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aggagaaattgatgatattc 27 |||||||||||||||||||| Sbjct: 3198 aggagaaattgatgatattc 3217
>gb|AC127560.4| Mus musculus BAC clone RP24-267I18 from chromosome 5, complete sequence Length = 186768 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 aaaacctataaaaagggaaagaca 211 ||||||| |||||||||||||||| Sbjct: 28595 aaaacctttaaaaagggaaagaca 28572
>gb|AC125087.2| Mus musculus BAC clone RP24-143E18 from chromosome 14, complete sequence Length = 180794 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 tatttttatctgctctgcac 410 |||||||||||||||||||| Sbjct: 172193 tatttttatctgctctgcac 172174
>gb|AC091520.10| Mus musculus strain 129/SvJ clone mgs1-480e13, complete sequence Length = 105813 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 tatttttatctgctctgcac 410 |||||||||||||||||||| Sbjct: 95744 tatttttatctgctctgcac 95725
>emb|AL161448.16| Human DNA sequence from clone RP11-381H12 on chromosome 9 Contains the 5' end of the SHB gene for SHB (Src homology 2 domain containing) adaptor protein B and two CpG islands, complete sequence Length = 164857 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 taaactaaaacctataaaaa 201 |||||||||||||||||||| Sbjct: 111722 taaactaaaacctataaaaa 111741
>emb|AL158192.15| Human DNA sequence from clone RP11-370F20 on chromosome 13 Contains the 5' end of the UGCGL2 gene for UDP-glucose ceramide glucosyltransferase-like 2 (HUGT2 FLJ10873 FLJ11485), the 5' end of the gene for a novel protein similar to heparan sulfate 6-sulfotransferase and two CpG islands, complete sequence Length = 186131 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ttatctgctctgcacttcag 415 |||||||||||||||||||| Sbjct: 87390 ttatctgctctgcacttcag 87409
>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence Length = 242759 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tatttttatctgctctgcac 410 |||||||||||||||||||| Sbjct: 182384 tatttttatctgctctgcac 182403
>gb|AC025839.12| Homo sapiens chromosome 8, clone RP11-370K2, complete sequence Length = 178009 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 acaggcagtcagacctcctg 228 |||||||||||||||||||| Sbjct: 163120 acaggcagtcagacctcctg 163139
>gb|AC093873.2| Homo sapiens BAC clone RP11-615B17 from 2, complete sequence Length = 210320 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gtgatttttcaacatgagtt 298 |||||||||||||||||||| Sbjct: 59822 gtgatttttcaacatgagtt 59841
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tttgcaccaaagctaccagg 151 |||||||||||||||||||| Sbjct: 1405316 tttgcaccaaagctaccagg 1405335
>emb|AL844198.7| Mouse DNA sequence from clone RP23-438P13 on chromosome 4, complete sequence Length = 176049 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 aggagaaattgatgatattcccag 31 ||||||||| |||||||||||||| Sbjct: 163386 aggagaaatagatgatattcccag 163363
>gb|AC123661.22| Mus musculus chromosome 5, clone RP23-211E12, complete sequence Length = 190017 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 aaaacctataaaaagggaaagaca 211 ||||||| |||||||||||||||| Sbjct: 82440 aaaacctttaaaaagggaaagaca 82417 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,050,263 Number of Sequences: 3902068 Number of extensions: 4050263 Number of successful extensions: 76620 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76533 Number of HSP's gapped (non-prelim): 87 length of query: 474 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 452 effective length of database: 17,147,199,772 effective search space: 7750534296944 effective search space used: 7750534296944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)