ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29e05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 446 bits (225), Expect = e-122 Identities = 347/385 (90%), Gaps = 2/385 (0%) Strand = Plus / Plus Query: 105 gaggccatggaggacgtgtgcgaggggaaggacttctccttcccggcggaggaggagcgg 164 ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 25949447 gaggccatggaggacgtctgcgaggggaaggacttctccttccccgcggaggaggagcgc 25949506 Query: 165 gttctccagctgtgggccaagctggacgcgttccacgagcagctgcggcgcacggagggc 224 || ||| |||||||| | |||| ||||| |||||||||||||| || |||||| ||||| Sbjct: 25949507 gtgctcaagctgtggtcggagctcgacgccttccacgagcagctccgccgcacgaagggc 25949566 Query: 225 ggcgaggagttcatcttctacgacggcccgcccttcgcgaccggcctcccccactacggc 284 |||||||||||||||||||||||||| || || ||||| ||||||||||| ||||| ||| Sbjct: 25949567 ggcgaggagttcatcttctacgacgggcccccgttcgccaccggcctcccgcactatggc 25949626 Query: 285 cacatcctcgccggcaccatcaaggacgtggtgacccggcaccagtcgatgcgcgggcgc 344 ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||| Sbjct: 25949627 cacatcctcgcgggcacaatcaaggacgtggtcacccgccaccagtcgatgcgcggccgc 25949686 Query: 345 cacgtgatgcggcgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgac 404 ||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 25949687 cacgtctcccgccgcttcgggtgggactgccatggcctccccgtcgagttcgagatcgac 25949746 Query: 405 aagctcctcggcatcaccaaccgccagcaggtgctcgacctcggcatcggcaagtac-ac 463 |||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||| || Sbjct: 25949747 aagcagctcggcatcaccaaccggcagcaggtgttcgacctcggtatcggcaagtacaac 25949806 Query: 464 gagacctgccgc-gcatcgtcacca 487 |||||||||||| |||||||||||| Sbjct: 25949807 gagacctgccgcggcatcgtcacca 25949831
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 446 bits (225), Expect = e-122 Identities = 347/385 (90%), Gaps = 2/385 (0%) Strand = Plus / Plus Query: 105 gaggccatggaggacgtgtgcgaggggaaggacttctccttcccggcggaggaggagcgg 164 ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 104545 gaggccatggaggacgtctgcgaggggaaggacttctccttccccgcggaggaggagcgc 104604 Query: 165 gttctccagctgtgggccaagctggacgcgttccacgagcagctgcggcgcacggagggc 224 || ||| |||||||| | |||| ||||| |||||||||||||| || |||||| ||||| Sbjct: 104605 gtgctcaagctgtggtcggagctcgacgccttccacgagcagctccgccgcacgaagggc 104664 Query: 225 ggcgaggagttcatcttctacgacggcccgcccttcgcgaccggcctcccccactacggc 284 |||||||||||||||||||||||||| || || ||||| ||||||||||| ||||| ||| Sbjct: 104665 ggcgaggagttcatcttctacgacgggcccccgttcgccaccggcctcccgcactatggc 104724 Query: 285 cacatcctcgccggcaccatcaaggacgtggtgacccggcaccagtcgatgcgcgggcgc 344 ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||| Sbjct: 104725 cacatcctcgcgggcacaatcaaggacgtggtcacccgccaccagtcgatgcgcggccgc 104784 Query: 345 cacgtgatgcggcgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgac 404 ||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 104785 cacgtctcccgccgcttcgggtgggactgccatggcctccccgtcgagttcgagatcgac 104844 Query: 405 aagctcctcggcatcaccaaccgccagcaggtgctcgacctcggcatcggcaagtac-ac 463 |||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||| || Sbjct: 104845 aagcagctcggcatcaccaaccggcagcaggtgttcgacctcggtatcggcaagtacaac 104904 Query: 464 gagacctgccgc-gcatcgtcacca 487 |||||||||||| |||||||||||| Sbjct: 104905 gagacctgccgcggcatcgtcacca 104929
>dbj|AK101482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041F01, full insert sequence Length = 4632 Score = 446 bits (225), Expect = e-122 Identities = 347/385 (90%), Gaps = 2/385 (0%) Strand = Plus / Plus Query: 105 gaggccatggaggacgtgtgcgaggggaaggacttctccttcccggcggaggaggagcgg 164 ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 213 gaggccatggaggacgtctgcgaggggaaggacttctccttccccgcggaggaggagcgc 272 Query: 165 gttctccagctgtgggccaagctggacgcgttccacgagcagctgcggcgcacggagggc 224 || ||| |||||||| | |||| ||||| |||||||||||||| || |||||| ||||| Sbjct: 273 gtgctcaagctgtggtcggagctcgacgccttccacgagcagctccgccgcacgaagggc 332 Query: 225 ggcgaggagttcatcttctacgacggcccgcccttcgcgaccggcctcccccactacggc 284 |||||||||||||||||||||||||| || || ||||| ||||||||||| ||||| ||| Sbjct: 333 ggcgaggagttcatcttctacgacgggcccccgttcgccaccggcctcccgcactatggc 392 Query: 285 cacatcctcgccggcaccatcaaggacgtggtgacccggcaccagtcgatgcgcgggcgc 344 ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||| Sbjct: 393 cacatcctcgcgggcacaatcaaggacgtggtcacccgccaccagtcgatgcgcggccgc 452 Query: 345 cacgtgatgcggcgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgac 404 ||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 453 cacgtctcccgccgcttcgggtgggactgccatggcctccccgtcgagttcgagatcgac 512 Query: 405 aagctcctcggcatcaccaaccgccagcaggtgctcgacctcggcatcggcaagtac-ac 463 |||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||| || Sbjct: 513 aagcagctcggcatcaccaaccggcagcaggtgttcgacctcggtatcggcaagtacaac 572 Query: 464 gagacctgccgc-gcatcgtcacca 487 |||||||||||| |||||||||||| Sbjct: 573 gagacctgccgcggcatcgtcacca 597
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 242 bits (122), Expect = 9e-61 Identities = 242/282 (85%) Strand = Plus / Minus Query: 111 atggaggacgtgtgcgaggggaaggacttctccttcccggcggaggaggagcgggttctc 170 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 4679922 atggacgaggtgtgcgaggggaaggacttctccttcccggcggaggaggagcgggtcctc 4679863 Query: 171 cagctgtgggccaagctggacgcgttccacgagcagctgcggcgcacggagggcggcgag 230 | || |||| |||| ||||| |||||||||||||| || ||||||| |||||||||| Sbjct: 4679862 cgcctctgggaggagctcgacgccttccacgagcagctccgccgcacggcgggcggcgag 4679803 Query: 231 gagttcatcttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatc 290 |||||| ||||||||||||| || |||||||| || |||||||| |||||||||||| || Sbjct: 4679802 gagttcgtcttctacgacgggccccccttcgccacgggcctcccgcactacggccacctc 4679743 Query: 291 ctcgccggcaccatcaaggacgtggtgacccggcaccagtcgatgcgcgggcgccacgtg 350 ||||| |||| ||||||||||| || |||| ||||| | |||||||| |||||||| Sbjct: 4679742 ctcgcgggcagcatcaaggacgccgtcgcccgccaccacgccatgcgcggccgccacgtc 4679683 Query: 351 atgcggcgcttcgggtgggactgccacggcctgcccgtcgag 392 || |||||||| ||||||||||||||| | ||||||||| Sbjct: 4679682 gcccgccgcttcggctgggactgccacggcgtccccgtcgag 4679641
>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1572_F02 Length = 93626 Score = 242 bits (122), Expect = 9e-61 Identities = 242/282 (85%) Strand = Plus / Minus Query: 111 atggaggacgtgtgcgaggggaaggacttctccttcccggcggaggaggagcgggttctc 170 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 51994 atggacgaggtgtgcgaggggaaggacttctccttcccggcggaggaggagcgggtcctc 51935 Query: 171 cagctgtgggccaagctggacgcgttccacgagcagctgcggcgcacggagggcggcgag 230 | || |||| |||| ||||| |||||||||||||| || ||||||| |||||||||| Sbjct: 51934 cgcctctgggaggagctcgacgccttccacgagcagctccgccgcacggcgggcggcgag 51875 Query: 231 gagttcatcttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatc 290 |||||| ||||||||||||| || |||||||| || |||||||| |||||||||||| || Sbjct: 51874 gagttcgtcttctacgacgggccccccttcgccacgggcctcccgcactacggccacctc 51815 Query: 291 ctcgccggcaccatcaaggacgtggtgacccggcaccagtcgatgcgcgggcgccacgtg 350 ||||| |||| ||||||||||| || |||| ||||| | |||||||| |||||||| Sbjct: 51814 ctcgcgggcagcatcaaggacgccgtcgcccgccaccacgccatgcgcggccgccacgtc 51755 Query: 351 atgcggcgcttcgggtgggactgccacggcctgcccgtcgag 392 || |||||||| ||||||||||||||| | ||||||||| Sbjct: 51754 gcccgccgcttcggctgggactgccacggcgtccccgtcgag 51713
>gb|AF326935.2|AF326935 Leishmania donovani isoleucine tRNA synthetase (IleRS) gene, complete cds Length = 3690 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 233 gttcatcttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatcct 292 ||||| ||||||||||||||| || |||||||| ||||| || ||||||||||||||| | Sbjct: 452 gttcagcttctacgacggcccaccgttcgcgactggcctgccgcactacggccacatctt 511 Query: 293 cgccggcaccatcaaggacgtggt 316 || ||||||||||||||| |||| Sbjct: 512 ggctggcaccatcaaggacatggt 535 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 344 ccacgtgatgcggcgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcga 403 |||||| || || |||||||| |||||||||||||| ||||| || |||| ||| ||||| Sbjct: 563 ccacgtcatccgtcgcttcggctgggactgccacggtctgccggtggagtacgaaatcga 622 Query: 404 caagctcctcggcatca 420 |||| | |||||||||| Sbjct: 623 caagatgctcggcatca 639
>ref|XM_322832.1| Neurospora crassa OR74A hypothetical protein (NCU03575.1) partial mRNA Length = 3240 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 239 cttctacgacggcccgcccttcgcgaccggcctcccccactacggccac 287 ||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 108 cttctacgatggcccgcccttcgccaccggcctcccccactacggccac 156 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 357 cgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgacaag 407 |||||||| |||||| |||||||||||| ||||| ||||||||||||| Sbjct: 226 cgcttcggctgggacacgcacggcctgcccatcgagcacgagatcgacaag 276
>ref|XM_950921.1| Neurospora crassa OR74A hypothetical protein (NCU03575.1) partial mRNA Length = 3240 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 239 cttctacgacggcccgcccttcgcgaccggcctcccccactacggccac 287 ||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 108 cttctacgatggcccgcccttcgccaccggcctcccccactacggccac 156 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 357 cgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgacaag 407 |||||||| |||||| |||||||||||| ||||| ||||||||||||| Sbjct: 226 cgcttcggctgggacacgcacggcctgcccatcgagcacgagatcgacaag 276
>emb|BX284746.1|NCB23I4 Neurospora crassa DNA linkage group II BAC contig B23I4 Length = 71047 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 239 cttctacgacggcccgcccttcgcgaccggcctcccccactacggccac 287 ||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 34676 cttctacgatggcccgcccttcgccaccggcctcccccactacggccac 34724 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 357 cgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgacaag 407 |||||||| |||||| |||||||||||| ||||| ||||||||||||| Sbjct: 34794 cgcttcggctgggacacgcacggcctgcccatcgagcacgagatcgacaag 34844
>gb|AC146331.35| Medicago truncatula clone mth2-7h18, complete sequence Length = 138838 Score = 79.8 bits (40), Expect = 8e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 236 catcttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatcctcgc 295 ||||||||||||||| || |||||||| ||||| ||||| ||||||||||||||||| || Sbjct: 59018 catcttctacgacggtccacccttcgccaccggtctccctcactacggccacatccttgc 59077 Query: 296 cggcaccatcaa 307 ||| || ||||| Sbjct: 59078 cggtactatcaa 59089
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 238 tcttctacgacggcccgcccttcgcgaccggcctcccccactacggccac 287 ||||||||||||||||||||||||| | |||||| || |||||||||||| Sbjct: 804892 tcttctacgacggcccgcccttcgccaacggcctgccgcactacggccac 804941 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 2118881 tcgagttcgagatcgacaagc 2118861
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 240 ttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatcctcgccggc 299 |||||||||||||| |||||||| ||||| || || ||||||||||| || || ||||| Sbjct: 224545 ttctacgacggcccccccttcgccaccgggcttccgcactacggccatattcttgccgga 224486 Query: 300 accatcaagg 309 |||||||||| Sbjct: 224485 accatcaagg 224476 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 357 cgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgacaagctcctcggc 416 ||||||||||||||||||||||| |||| |||||||| || || |||||| ||||||| Sbjct: 223814 cgcttcgggtgggactgccacgggttgcctgtcgagtttgaaattgacaagagcctcggc 223755 Query: 417 atcac 421 ||||| Sbjct: 223754 atcac 223750
>gb|AC009366.8| Drosophila melanogaster 3L BAC RP98-48E10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169841 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 357 cgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgacaagct 409 |||||||| ||||| |||||||| |||||||| ||||||||||| |||||||| Sbjct: 32572 cgcttcggctgggattgccacggactgcccgtggagttcgagattgacaagct 32624 Score = 63.9 bits (32), Expect = 5e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 240 ttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatcctcgccggc 299 |||||||| || |||||||| || ||||| || ||||||||||| ||||| || || ||| Sbjct: 32455 ttctacgatggaccgccctttgcaaccgggctgccccactacggacacattcttgctggc 32514 Query: 300 accatcaaggac 311 |||||||||||| Sbjct: 32515 accatcaaggac 32526
>gb|AY118538.1| Drosophila melanogaster LD27166 full insert cDNA Length = 3908 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 357 cgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgacaagct 409 |||||||| ||||| |||||||| |||||||| ||||||||||| |||||||| Sbjct: 390 cgcttcggctgggattgccacggactgcccgtggagttcgagattgacaagct 442 Score = 63.9 bits (32), Expect = 5e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 240 ttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatcctcgccggc 299 |||||||| || |||||||| || ||||| || ||||||||||| ||||| || || ||| Sbjct: 273 ttctacgatggaccgccctttgcaaccgggctgccccactacggacacattcttgctggc 332 Query: 300 accatcaaggac 311 |||||||||||| Sbjct: 333 accatcaaggac 344
>ref|NM_176387.1| Drosophila melanogaster Isoleucyl-tRNA synthetase CG11471-RD, transcript variant D (Aats-ile), mRNA Length = 3848 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 357 cgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgacaagct 409 |||||||| ||||| |||||||| |||||||| ||||||||||| |||||||| Sbjct: 349 cgcttcggctgggattgccacggactgcccgtggagttcgagattgacaagct 401 Score = 63.9 bits (32), Expect = 5e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 240 ttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatcctcgccggc 299 |||||||| || |||||||| || ||||| || ||||||||||| ||||| || || ||| Sbjct: 232 ttctacgatggaccgccctttgcaaccgggctgccccactacggacacattcttgctggc 291 Query: 300 accatcaaggac 311 |||||||||||| Sbjct: 292 accatcaaggac 303
>ref|NM_168952.2| Drosophila melanogaster Isoleucyl-tRNA synthetase CG11471-RA, transcript variant A (Aats-ile), mRNA Length = 3910 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 357 cgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgacaagct 409 |||||||| ||||| |||||||| |||||||| ||||||||||| |||||||| Sbjct: 403 cgcttcggctgggattgccacggactgcccgtggagttcgagattgacaagct 455 Score = 63.9 bits (32), Expect = 5e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 240 ttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatcctcgccggc 299 |||||||| || |||||||| || ||||| || ||||||||||| ||||| || || ||| Sbjct: 286 ttctacgatggaccgccctttgcaaccgggctgccccactacggacacattcttgctggc 345 Query: 300 accatcaaggac 311 |||||||||||| Sbjct: 346 accatcaaggac 357
>ref|NM_080101.3| Drosophila melanogaster Isoleucyl-tRNA synthetase CG11471-RC, transcript variant C (Aats-ile), mRNA Length = 3823 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 357 cgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgacaagct 409 |||||||| ||||| |||||||| |||||||| ||||||||||| |||||||| Sbjct: 324 cgcttcggctgggattgccacggactgcccgtggagttcgagattgacaagct 376 Score = 63.9 bits (32), Expect = 5e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 240 ttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatcctcgccggc 299 |||||||| || |||||||| || ||||| || ||||||||||| ||||| || || ||| Sbjct: 207 ttctacgatggaccgccctttgcaaccgggctgccccactacggacacattcttgctggc 266 Query: 300 accatcaaggac 311 |||||||||||| Sbjct: 267 accatcaaggac 278
>gb|AE003597.4| Drosophila melanogaster chromosome 3L, section 78 of 83 of the complete sequence Length = 365612 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 357 cgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgacaagct 409 |||||||| ||||| |||||||| |||||||| ||||||||||| |||||||| Sbjct: 165464 cgcttcggctgggattgccacggactgcccgtggagttcgagattgacaagct 165516 Score = 63.9 bits (32), Expect = 5e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 240 ttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatcctcgccggc 299 |||||||| || |||||||| || ||||| || ||||||||||| ||||| || || ||| Sbjct: 165347 ttctacgatggaccgccctttgcaaccgggctgccccactacggacacattcttgctggc 165406 Query: 300 accatcaaggac 311 |||||||||||| Sbjct: 165407 accatcaaggac 165418
>ref|XM_756214.1| Ustilago maydis 521 hypothetical protein (UM05160.1) partial mRNA Length = 3264 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 357 cgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcgacaagc 408 |||||||| ||||| ||||||||||| ||||||||| |||||||||||||| Sbjct: 277 cgcttcggttgggattgccacggccttcccgtcgagcacgagatcgacaagc 328 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 234 ttcatcttctacgacggcccgcccttcgcgaccggcctcccccactacggcca 286 |||| ||||||||||||||| |||||||| ||||| || || || |||||||| Sbjct: 154 ttcagcttctacgacggccctcccttcgccaccggtctgccgcattacggcca 206
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 240 ttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatcctc 293 ||||||||||||||||| ||||||| ||| || || |||||||||||| ||||| Sbjct: 55565 ttctacgacggcccgccgttcgcgaacgggctgccgcactacggccacctcctc 55618
>gb|AY993941.1| Microbacterium arborescens strain SE 14 cosmid MAS10D5, complete sequence Length = 33203 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 238 tcttctacgacggcccgcccttcgcgaccggcctcccccactacggccac 287 ||||||||||||||||||||||||| | ||| || || |||||||||||| Sbjct: 7191 tcttctacgacggcccgcccttcgccaacggtctgccgcactacggccac 7142
>gb|BC056826.1| Danio rerio zgc:63790, mRNA (cDNA clone MGC:63790 IMAGE:2644687), complete cds Length = 3972 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 344 ccacgtgatgcggcgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcga 403 ||||||| |||||||||||| ||||||||||| |||||||| || |||| |||||||| Sbjct: 277 ccacgtggagcggcgcttcggctgggactgccatggcctgccggtggagtatgagatcga 336 Score = 40.1 bits (20), Expect = 6.7 Identities = 59/72 (81%) Strand = Plus / Plus Query: 240 ttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatcctcgccggc 299 ||||||||||| ||||||||||| || || || || ||||| || || || || || || Sbjct: 173 ttctacgacgggccgcccttcgccacaggtctgcctcactatggtcatattctggcggga 232 Query: 300 accatcaaggac 311 |||||||||||| Sbjct: 233 accatcaaggac 244
>ref|NM_199896.1| Danio rerio zgc:63790 (zgc:63790), mRNA Length = 3972 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 344 ccacgtgatgcggcgcttcgggtgggactgccacggcctgcccgtcgagttcgagatcga 403 ||||||| |||||||||||| ||||||||||| |||||||| || |||| |||||||| Sbjct: 277 ccacgtggagcggcgcttcggctgggactgccatggcctgccggtggagtatgagatcga 336 Score = 40.1 bits (20), Expect = 6.7 Identities = 59/72 (81%) Strand = Plus / Plus Query: 240 ttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatcctcgccggc 299 ||||||||||| ||||||||||| || || || || ||||| || || || || || || Sbjct: 173 ttctacgacgggccgcccttcgccacaggtctgcctcactatggtcatattctggcggga 232 Query: 300 accatcaaggac 311 |||||||||||| Sbjct: 233 accatcaaggac 244
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 362 cgggtgggactgccacggcctgcccgt 388 ||||||||||||||||||||||||||| Sbjct: 1308151 cgggtgggactgccacggcctgcccgt 1308125
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 230 ggagttcatcttctacgacggcccgcccttcgc 262 ||||||| ||||||||||||||||||| ||||| Sbjct: 1932268 ggagttcgtcttctacgacggcccgccgttcgc 1932300 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 cccgtcgagttcgagatcgac 404 ||||||||||||||||||||| Sbjct: 5949916 cccgtcgagttcgagatcgac 5949896
>ref|XM_320939.2| Anopheles gambiae str. PEST ENSANGP00000017588 (ENSANGG00000015099), partial mRNA Length = 3838 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 273 ccccactacggccacatcctcgccggcac 301 ||||||||||| ||||||||||||||||| Sbjct: 380 ccccactacggacacatcctcgccggcac 408
>ref|XM_390898.1| Gibberella zeae PH-1 chromosome 3 conserved hypothetical protein (FG10722.1) partial mRNA Length = 3243 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Plus Query: 240 ttctacgacggcccgcccttcgcgaccggcctcccccactacgg 283 ||||||||||| || || ||||||||||||||||| || ||||| Sbjct: 109 ttctacgacggacctcctttcgcgaccggcctccctcattacgg 152
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcccgtcgagt 393 ||||||||||||||||||||| |||||| Sbjct: 892849 tgggactgccacggcctgcccatcgagt 892876 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 cggccacatcctcgccggcaccatcaag 308 |||||||||||| ||||||| ||||||| Sbjct: 3093152 cggccacatcctggccggcaacatcaag 3093125
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcccgtcgagt 393 ||||||||||||||||||||| |||||| Sbjct: 3480765 tgggactgccacggcctgcccatcgagt 3480738
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome Length = 2843201 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 357 cgcttcgggtgggactgccacggcctgcccgt 388 ||||||||||||||||||||||| || ||||| Sbjct: 2701765 cgcttcgggtgggactgccacggtcttcccgt 2701734
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 220 agggcggcgaggagttcatcttctacgacggcccgccct 258 ||||| ||||| |||||||| || ||||||||||||||| Sbjct: 2483770 agggccgcgagcagttcatcctccacgacggcccgccct 2483732 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 2483624 tgggactgccacggcctgcc 2483605
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcccgtcgag 392 ||||||||||||||||||||| ||||| Sbjct: 3442265 tgggactgccacggcctgcccatcgag 3442239
>ref|XM_723545.1| Plasmodium yoelii yoelii str. 17XNL virulence factor MVIN (PY07692) partial mRNA Length = 3592 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcccgtcgag 392 ||||||||||||||||||||| ||||| Sbjct: 2317 tgggactgccacggcctgcccatcgag 2343
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcccgtcgag 392 |||||||||||||| |||||||||||| Sbjct: 1717677 tgggactgccacgggctgcccgtcgag 1717651
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcccgtcgag 392 ||||||||||||||||||||| ||||| Sbjct: 2442333 tgggactgccacggcctgcccatcgag 2442359
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcccgtcgag 392 ||||||||||||||||||||| ||||| Sbjct: 15064 tgggactgccacggcctgcccatcgag 15090
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 363 gggtgggactgccacggcctgcccgtcgag 392 |||||||||||||||||||| ||| ||||| Sbjct: 391144 gggtgggactgccacggcctccccatcgag 391173 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 gggcgccacgtgatgcggcgc 359 ||||||||||||||||||||| Sbjct: 3604297 gggcgccacgtgatgcggcgc 3604277
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 gctggacgcgttccacgagcag 206 |||||||||||||||||||||| Sbjct: 424949 gctggacgcgttccacgagcag 424928
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcccgtcga 391 ||||||||||||||||||||| |||| Sbjct: 1933091 tgggactgccacggcctgcccatcga 1933066
>ref|NM_207941.1| Eremothecium gossypii AAR047Cp (AAR047C), mRNA Length = 978 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 185 gctggacgcgttccacgagcag 206 |||||||||||||||||||||| Sbjct: 573 gctggacgcgttccacgagcag 594
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcccgtcga 391 ||||||||||||||||||||| |||| Sbjct: 71597 tgggactgccacggcctgcccatcga 71622
>ref|NM_117100.2| Arabidopsis thaliana ATP binding / isoleucine-tRNA ligase/ tRNA ligase AT4G10320 mRNA, complete cds Length = 3769 Score = 42.1 bits (21), Expect = 1.7 Identities = 54/65 (83%) Strand = Plus / Plus Query: 231 gagttcatcttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatc 290 |||| ||||||||||||||| || || || || ||||| || || |||||||| || ||| Sbjct: 121 gagtacatcttctacgacggacctccttttgccaccggacttcctcactacggacatatc 180 Query: 291 ctcgc 295 ||||| Sbjct: 181 ctcgc 185
>gb|AC135121.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0089M05, complete sequence Length = 131308 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 288 atcctcgccggcaccatcaaggacg 312 |||||| |||||||||||||||||| Sbjct: 12451 atcctctccggcaccatcaaggacg 12475
>ref|XM_382720.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02544.1) partial mRNA Length = 2580 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 101 ggccgaggccatggaggacgtgtgcgagg 129 |||||||||| ||||||||||| |||||| Sbjct: 2446 ggccgaggccgtggaggacgtgggcgagg 2474
>ref|XM_968491.1| PREDICTED: Tribolium castaneum similar to Isoleucyl-tRNA synthetase, cytoplasmic (Isoleucine--tRNA ligase) (IleRS) (IRS) (LOC662393), mRNA Length = 3624 Score = 42.1 bits (21), Expect = 1.7 Identities = 63/77 (81%) Strand = Plus / Plus Query: 240 ttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatcctcgccggc 299 ||||| ||||||||||| || |||||||| | ||||| || || ||||| || || || Sbjct: 139 ttctatgacggcccgccgtttgcgaccgggttgccccattatgggcacattctggcgggg 198 Query: 300 accatcaaggacgtggt 316 |||||||| |||||||| Sbjct: 199 accatcaaagacgtggt 215 Score = 40.1 bits (20), Expect = 6.7 Identities = 41/48 (85%) Strand = Plus / Plus Query: 360 ttcgggtgggactgccacggcctgcccgtcgagttcgagatcgacaag 407 ||||| ||||||||||| || || ||||| |||| |||||| |||||| Sbjct: 259 ttcggctgggactgccatgggctacccgtggagtacgagattgacaag 306
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 427 gccagcaggtgctcgacctcg 447 ||||||||||||||||||||| Sbjct: 1007063 gccagcaggtgctcgacctcg 1007083 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 2638554 tgggactgccacggcctgcc 2638535
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcccgtcgagtt 394 |||||||||||||| |||||| ||||||| Sbjct: 2892429 tgggactgccacggtctgcccatcgagtt 2892401
>emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 29 Length = 199861 Score = 42.1 bits (21), Expect = 1.7 Identities = 54/65 (83%) Strand = Plus / Minus Query: 231 gagttcatcttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatc 290 |||| ||||||||||||||| || || || || ||||| || || |||||||| || ||| Sbjct: 36619 gagtacatcttctacgacggacctccttttgccaccggacttcctcactacggacatatc 36560 Query: 291 ctcgc 295 ||||| Sbjct: 36559 ctcgc 36555
>emb|AL049488.1|ATF24G24 Arabidopsis thaliana DNA chromosome 4, BAC clone F24G24 (ESSA project) Length = 99856 Score = 42.1 bits (21), Expect = 1.7 Identities = 54/65 (83%) Strand = Plus / Minus Query: 231 gagttcatcttctacgacggcccgcccttcgcgaccggcctcccccactacggccacatc 290 |||| ||||||||||||||| || || || || ||||| || || |||||||| || ||| Sbjct: 49951 gagtacatcttctacgacggacctccttttgccaccggacttcctcactacggacatatc 49892 Query: 291 ctcgc 295 ||||| Sbjct: 49891 ctcgc 49887
>gb|AY079084.1| Pseudomonas fluorescens NCIMB 10586 isoleucyl-tRNA synthetase gene, complete cds Length = 3540 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 246 gacggcccgcccttcgcgaccggcctcccccactacggcca 286 ||||||||||| || || |||||||| || ||||||||||| Sbjct: 498 gacggcccgccgtttgctaccggcctgccgcactacggcca 538
>gb|AF318063.2|AF318063S1 Pseudomonas fluorescens NCIMB 10586 mupirocin biosynthetic gene cluster Length = 75138 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 246 gacggcccgcccttcgcgaccggcctcccccactacggcca 286 ||||||||||| || || |||||||| || ||||||||||| Sbjct: 54576 gacggcccgccgtttgctaccggcctgccgcactacggcca 54616
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 288 atcctcgccggcaccatcaaggacg 312 |||||| |||||||||||||||||| Sbjct: 16844705 atcctctccggcaccatcaaggacg 16844729
>dbj|AK111232.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-E12, full insert sequence Length = 3375 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 375 cacggcctgcccgtcgagttcgagatcgacaag 407 |||||| ||||| |||||| ||||||||||||| Sbjct: 265 cacggcgtgcccatcgagtacgagatcgacaag 297
>gb|AY928939.1| Fragaria x ananassa chloroplast chlorophyll a/b-binding protein CP24 precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 441 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 tcgccggcaccatcaaggacg 312 ||||||||||||||||||||| Sbjct: 338 tcgccggcaccatcaaggacg 358
>dbj|AB062785.1| Pseudomonas fluorescens ileS2 gene for isoleucyl-tRNA synthetase 2, complete cds Length = 3093 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 246 gacggcccgcccttcgcgaccggcctcccccactacggcca 286 ||||||||||| || || |||||||| || ||||||||||| Sbjct: 133 gacggcccgccgtttgctaccggcctgccgcactacggcca 173
>emb|AM181567.1| Microbacterium aurum partial rpoB gene for RNA polymerase subunit B, type strain DSM 8600 Length = 1085 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 178 tcgagttcgagatcgacaagc 198
>emb|AM181566.1| Microbacterium aurantiacum partial rpoB gene for RNA polymerase subunit B, type strain DSM 12506 Length = 1072 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 165 tcgagttcgagatcgacaagc 185
>emb|AM181565.1| Microbacterium arborescens partial rpoB gene for RNA polymerase subunit B, type strain DSM 20754 Length = 1080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 176 tcgagttcgagatcgacaagc 196
>emb|AM181564.1| Microbacterium aerolatum partial rpoB gene for RNA polymerase subunit B, type strain DSM 14217 Length = 1172 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 183 tcgagttcgagatcgacaagc 203
>emb|AM181563.1| Agromyces albus partial rpoB gene for RNA polymerase subunit B, type strain DSM 15934 Length = 1030 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 176 tcgagttcgagatcgacaagc 196
>emb|AM181589.1| Microbacterium testaceum partial rpoB gene for RNA polymerase subunit B, type strain DSM 20166 Length = 1087 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 182 tcgagttcgagatcgacaagc 202
>emb|AM181588.1| Microbacterium terregens partial rpoB gene for RNA polymerase subunit B, type strain DSM 20449 Length = 1064 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 184 tcgagttcgagatcgacaagc 204
>emb|AM181587.1| Microbacterium schleiferi partial rpoB gene for RNA polymerase subunit B, type strain DSM 20489 Length = 1175 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 179 tcgagttcgagatcgacaagc 199
>emb|AM181586.1| Microbacterium saperdae partial rpoB gene for RNA polymerase subunit B, type strain DSM 20169 Length = 1094 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 184 tcgagttcgagatcgacaagc 204
>emb|AM181585.1| Microbacterium resistens partial rpoB gene for RNA polymerase subunit B, type strain DSM 11986 Length = 1044 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 181 tcgagttcgagatcgacaagc 201
>emb|AM181584.1| Microbacterium phyllosphaerae partial rpoB gene for RNA polymerase subunit B, type strain DSM 13468 Length = 1065 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 173 tcgagttcgagatcgacaagc 193
>emb|AM181583.1| Microbacterium oxydans partial rpoB gene for RNA polymerase subunit B, type strain DSM 20578 Length = 1093 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 187 tcgagttcgagatcgacaagc 207
>emb|AM181582.1| Microbacterium maritypicum partial rpoB gene for RNA polymerase subunit B, type strain DSM 12512 Length = 1093 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 184 tcgagttcgagatcgacaagc 204
>emb|AM181581.1| Microbacterium luteolum partial rpoB gene for RNA polymerase subunit B, type strain DSM 20143 Length = 1093 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 186 tcgagttcgagatcgacaagc 206
>emb|AM181580.1| Microbacterium laevaniformans partial rpoB gene for RNA polymerase subunit B, type strain DSM 20140 Length = 1086 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 180 tcgagttcgagatcgacaagc 200
>emb|AM181579.1| Microbacterium liquefaciens partial rpoB gene for RNA polymerase subunit B, type strain DSM 20638 Length = 1074 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 167 tcgagttcgagatcgacaagc 187
>emb|AM181578.1| Microbacterium lacticum partial rpoB gene for RNA polymerase subunit B, type strain DSM 20427 Length = 1078 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 174 tcgagttcgagatcgacaagc 194
>emb|AM181577.1| Microbacterium kitamiense partial rpoB gene for RNA polymerase subunit B, type strain DSM 13237 Length = 1080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 174 tcgagttcgagatcgacaagc 194
>emb|AM181576.1| Microbacterium ketosireducens partial rpoB gene for RNA polymerase subunit B, type strain DSM 12510 Length = 1080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 176 tcgagttcgagatcgacaagc 196
>emb|AM181575.1| Microbacterium keratanolyticum partial rpoB gene for RNA polymerase subunit B, type strain DSM 8606 Length = 1176 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 183 tcgagttcgagatcgacaagc 203
>emb|AM181574.1| Microbacterium imperiale partial rpoB gene for RNA polymerase subunit B, type strain DSM 20530 Length = 1085 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 179 tcgagttcgagatcgacaagc 199
>emb|AM181573.1| Microbacterium hominis partial rpoB gene for RNA polymerase subunit B, type strain DSM 12509 Length = 1090 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 184 tcgagttcgagatcgacaagc 204
>emb|AM181572.1| Microbacterium foliorum partial rpoB gene for RNA polymerase subunit B, type strain DSM 12966 Length = 1080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 170 tcgagttcgagatcgacaagc 190
>emb|AM181571.1| Microbacterium flavescens partial rpoB gene for RNA polymerase subunit B, type strain DSM 20643 Length = 1078 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 172 tcgagttcgagatcgacaagc 192
>emb|AM181570.1| Microbacterium esteraromaticum partial rpoB gene for RNA polymerase subunit B, type strain DSM 8609 Length = 1030 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 124 tcgagttcgagatcgacaagc 144
>emb|AM181569.1| Microbacterium dextranolyticum partial rpoB gene for RNA polymerase subunit B, type strain DSM 8607 Length = 1056 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 182 tcgagttcgagatcgacaagc 202
>emb|AM181568.1| Microbacterium chocolatum partial rpoB gene for RNA polymerase subunit B, type strain DSM 12507 Length = 1091 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcgagttcgagatcgacaagc 408 ||||||||||||||||||||| Sbjct: 185 tcgagttcgagatcgacaagc 205
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 179 ggccaagctggacgcgttcca 199 ||||||||||||||||||||| Sbjct: 2917838 ggccaagctggacgcgttcca 2917818 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 3877525 tgggactgccacggcctgcc 3877506
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 288 atcctcgccggcaccatcaaggacg 312 |||||| |||||||||||||||||| Sbjct: 16938476 atcctctccggcaccatcaaggacg 16938500
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 291799 tgggactgccacggcctgcc 291780
>ref|XM_363239.1| Magnaporthe grisea 70-15 hypothetical protein (MG01165.4) partial mRNA Length = 2925 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 280 tgggactgccacggcctgcc 299
>gb|AC084383.1| Mus musculus BAC clone RP23-10B20 from 17, complete sequence Length = 203589 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ccagctgtgggccaagctgg 189 |||||||||||||||||||| Sbjct: 124498 ccagctgtgggccaagctgg 124479
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 4040340 tgggactgccacggcctgcc 4040359
>ref|XM_796853.1| PREDICTED: Strongylocentrotus purpuratus similar to isoleucine-tRNA synthetase, transcript variant 3 (LOC577472), mRNA Length = 3876 Score = 40.1 bits (20), Expect = 6.7 Identities = 56/68 (82%) Strand = Plus / Plus Query: 252 ccgcccttcgcgaccggcctcccccactacggccacatcctcgccggcaccatcaaggac 311 |||||||| || ||||| || ||||||||||| |||||| | || || || |||||||| Sbjct: 139 ccgccctttgccaccggtctaccccactacggtcacatcttggctggaactatcaaggat 198 Query: 312 gtggtgac 319 || ||||| Sbjct: 199 gttgtgac 206
>ref|XM_796806.1| PREDICTED: Strongylocentrotus purpuratus similar to isoleucine-tRNA synthetase, transcript variant 2 (LOC577472), mRNA Length = 3909 Score = 40.1 bits (20), Expect = 6.7 Identities = 56/68 (82%) Strand = Plus / Plus Query: 252 ccgcccttcgcgaccggcctcccccactacggccacatcctcgccggcaccatcaaggac 311 |||||||| || ||||| || ||||||||||| |||||| | || || || |||||||| Sbjct: 139 ccgccctttgccaccggtctaccccactacggtcacatcttggctggaactatcaaggat 198 Query: 312 gtggtgac 319 || ||||| Sbjct: 199 gttgtgac 206
>ref|XM_775022.1| PREDICTED: Strongylocentrotus purpuratus similar to isoleucine-tRNA synthetase, transcript variant 1 (LOC577472), mRNA Length = 3873 Score = 40.1 bits (20), Expect = 6.7 Identities = 56/68 (82%) Strand = Plus / Plus Query: 252 ccgcccttcgcgaccggcctcccccactacggccacatcctcgccggcaccatcaaggac 311 |||||||| || ||||| || ||||||||||| |||||| | || || || |||||||| Sbjct: 139 ccgccctttgccaccggtctaccccactacggtcacatcttggctggaactatcaaggat 198 Query: 312 gtggtgac 319 || ||||| Sbjct: 199 gttgtgac 206
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 43810 tgggactgccacggcctgcc 43791
>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7 Length = 348764 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 290293 tgggactgccacggcctgcc 290274
>gb|AE005745.1| Caulobacter crescentus CB15 section 71 of 359 of the complete genome Length = 12357 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 7087 tgggactgccacggcctgcc 7068
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 1804948 tgggactgccacggcctgcc 1804967
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcccgtcgagt 393 |||||||||||||| |||||| |||||| Sbjct: 3519027 tgggactgccacggtctgcccatcgagt 3519054
>emb|BX321896.13| Zebrafish DNA sequence from clone RP71-49B22 in linkage group 23, complete sequence Length = 165985 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 ggcgccacgtgatgcggcgcttcgggtg 367 ||||| ||||||||||||||||| |||| Sbjct: 53261 ggcgctacgtgatgcggcgcttctggtg 53234
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 3416081 tgggactgccacggcctgcc 3416100
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 ccacggcctgcccgtcgagt 393 |||||||||||||||||||| Sbjct: 2215656 ccacggcctgcccgtcgagt 2215637
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 4757129 tgggactgccacggcctgcc 4757110
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 3789788 tgggactgccacggcctgcc 3789807
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 1950902 tgggactgccacggcctgcc 1950921
>gb|AC158609.10| Mus musculus 6 BAC RP24-89F5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 217329 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gaggccgaggccatggagga 118 |||||||||||||||||||| Sbjct: 126224 gaggccgaggccatggagga 126205
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 2732174 tgggactgccacggcctgcc 2732155
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 8215950 tgggactgccacggcctgcc 8215969
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 6768907 tgggactgccacggcctgcc 6768926
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 4991049 tgggactgccacggcctgcc 4991030
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 1359250 tgggactgccacggcctgcc 1359269
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 710483 tgggactgccacggcctgcc 710502
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 cggcctgcccgtcgagttcg 396 |||||||||||||||||||| Sbjct: 489956 cggcctgcccgtcgagttcg 489975
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.7 Identities = 41/48 (85%) Strand = Plus / Plus Query: 240 ttctacgacggcccgcccttcgcgaccggcctcccccactacggccac 287 ||||||||||| ||||| ||||| | ||| || || |||||||||||| Sbjct: 1324560 ttctacgacgggccgccgttcgccaacgggctgccgcactacggccac 1324607
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 gggtgggactgccacggcct 382 |||||||||||||||||||| Sbjct: 148172 gggtgggactgccacggcct 148191
>emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chromosome 2, complete sequence Length = 212007 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 gggactgccacggcctgccc 386 |||||||||||||||||||| Sbjct: 79115 gggactgccacggcctgccc 79134
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 418905 tgggactgccacggcctgcc 418924
>gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complete sequence Length = 207908 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gaggccgaggccatggagga 118 |||||||||||||||||||| Sbjct: 26513 gaggccgaggccatggagga 26532
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 tcgagttcgagatcgacaag 407 |||||||||||||||||||| Sbjct: 1086336 tcgagttcgagatcgacaag 1086317
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tgggactgccacggcctgcc 385 |||||||||||||||||||| Sbjct: 2512080 tgggactgccacggcctgcc 2512061 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,054,771 Number of Sequences: 3902068 Number of extensions: 3054771 Number of successful extensions: 68241 Number of sequences better than 10.0: 117 Number of HSP's better than 10.0 without gapping: 118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64645 Number of HSP's gapped (non-prelim): 3586 length of query: 497 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 475 effective length of database: 17,147,199,772 effective search space: 8144919891700 effective search space used: 8144919891700 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
