ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29e04 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 168 bits (426), Expect = 3e-42 Identities = 79/85 (92%), Positives = 82/85 (96%) Frame = +1 Query: 1 QGLQPMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDV 180 QGLQPMLDVPIYGRIAT+ELFRPH EAQDFLFIATERYKFCVLQWD E SEL+TR+MGDV Sbjct: 48 QGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDV 107 Query: 181 SDRIGRPTDNGQIGIIDPDCRLIGL 255 SDRIGRPTDNGQIGIIDPDCRLIGL Sbjct: 108 SDRIGRPTDNGQIGIIDPDCRLIGL 132
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) (High pigmentation protein 1) Length = 1090 Score = 163 bits (413), Expect = 9e-41 Identities = 76/85 (89%), Positives = 80/85 (94%) Frame = +1 Query: 1 QGLQPMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDV 180 QGLQPMLDVPIYGRIAT+ELFRPH E QD LFIATERYKFCVLQWD E SE++TR+MGDV Sbjct: 48 QGLQPMLDVPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDV 107 Query: 181 SDRIGRPTDNGQIGIIDPDCRLIGL 255 SDRIGRPTDNGQIGIIDPDCRLIGL Sbjct: 108 SDRIGRPTDNGQIGIIDPDCRLIGL 132
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 160 bits (406), Expect = 6e-40 Identities = 74/85 (87%), Positives = 81/85 (95%) Frame = +1 Query: 1 QGLQPMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDV 180 QGLQ +LDVP+YGRIAT+ELFRPH EAQDFLF+ATERYKFCVLQWD E SEL+TR+MGDV Sbjct: 48 QGLQTILDVPLYGRIATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDV 107 Query: 181 SDRIGRPTDNGQIGIIDPDCRLIGL 255 SDRIGRPTDNGQIGIIDPDCR+IGL Sbjct: 108 SDRIGRPTDNGQIGIIDPDCRVIGL 132
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) Length = 1095 Score = 159 bits (402), Expect = 2e-39 Identities = 74/83 (89%), Positives = 78/83 (93%) Frame = +1 Query: 7 LQPMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSD 186 LQPMLDVPIYGRIAT+ELFRPH E QD LFIATERYKFCVLQWD E SE++TR+MGDVSD Sbjct: 55 LQPMLDVPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSD 114 Query: 187 RIGRPTDNGQIGIIDPDCRLIGL 255 RIGRPTDNGQIGIIDPDCRLIGL Sbjct: 115 RIGRPTDNGQIGIIDPDCRLIGL 137
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 100 bits (249), Expect = 1e-21 Identities = 45/87 (51%), Positives = 67/87 (77%), Gaps = 2/87 (2%) Frame = +1 Query: 1 QGLQPMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMG 174 +GL+P+ +V +YG+IA +ELFRP E++D LFI T +Y C+L++ E +++TR+ G Sbjct: 47 EGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHG 106 Query: 175 DVSDRIGRPTDNGQIGIIDPDCRLIGL 255 +V DRIGRP++ G IGIIDP+CR+IGL Sbjct: 107 NVQDRIGRPSETGIIGIIDPECRMIGL 133
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 100 bits (249), Expect = 1e-21 Identities = 45/87 (51%), Positives = 67/87 (77%), Gaps = 2/87 (2%) Frame = +1 Query: 1 QGLQPMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMG 174 +GL+P+ +V +YG+IA +ELFRP E++D LFI T +Y C+L++ E +++TR+ G Sbjct: 47 EGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHG 106 Query: 175 DVSDRIGRPTDNGQIGIIDPDCRLIGL 255 +V DRIGRP++ G IGIIDP+CR+IGL Sbjct: 107 NVQDRIGRPSETGIIGIIDPECRMIGL 133
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Frame = +1 Query: 31 IYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTR-SMGDVSDRIGRPTD 207 I+ +I ++ F+P + D + +AT+ +++ L WDA + + + D S+R R + Sbjct: 55 IFAKIVNVKAFKPVSSPTDHIIVATDSFRYFTLFWDANDNTVSNGIKIQDCSERSLRESQ 114 Query: 208 NGQIGIIDPDCRLIGL 255 +G + ++DP R+I L Sbjct: 115 SGPLLLVDPFQRVICL 130
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 33.9 bits (76), Expect = 0.11 Identities = 28/77 (36%), Positives = 38/77 (49%) Frame = +2 Query: 23 TCPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSFSLDPWEMFLIASAAL 202 T Y + +SSS+LT SSSL TSS+S + + N + S P L +S+A Sbjct: 60 TTSYNYNTSSASSSSLTSSSAASSSL----TSSSSLASSSTNSTTSASPTSSSLTSSSA- 114 Query: 203 RTMDRLGSSTLTVDLLA 253 T L SS+ T LA Sbjct: 115 -TSSSLASSSTTSSSLA 130
>FCMD_HUMAN (O75072) Fukutin (EC 2.-.-.-) (Fukuyama-type congenital muscular| dystrophy protein) Length = 461 Score = 32.0 bits (71), Expect = 0.43 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -2 Query: 231 VDDPNLSIVRRAADAIRNISHGSSEKL*FFCVP 133 +D L ++ + + ++N SHGS+ + FFCVP Sbjct: 75 IDPLILELINKNFEQVKNTSHGSTSQCKFFCVP 107
>RIK1_SCHPO (Q10426) Silencing protein rik1| Length = 1040 Score = 31.2 bits (69), Expect = 0.73 Identities = 12/52 (23%), Positives = 26/52 (50%) Frame = +1 Query: 4 GLQPMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELL 159 GLQ +P++ + I +RP +D+LF+ + + WD + +++ Sbjct: 46 GLQFFTSIPLFSTVKHIRPYRPPGLDRDYLFVVLNDDTYFSIYWDEDYQKVI 97
>GPDA_TROWT (Q83G27) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 339 Score = 30.8 bits (68), Expect = 0.95 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = -2 Query: 228 DDPNLSIVRRAADAIRNISHGSSEKL*FFCVPLQDAELVPLRGNEEEVLGLI 73 D+P++S+V A A NI G+ + F+C+P D + V + + ++ LI Sbjct: 162 DEPSVSVVASANIATANIVAGTLKCPGFYCIPSSDIKGVEICAASKNLVALI 213
>GPDA_TROW8 (Q83I37) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 325 Score = 30.8 bits (68), Expect = 0.95 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = -2 Query: 228 DDPNLSIVRRAADAIRNISHGSSEKL*FFCVPLQDAELVPLRGNEEEVLGLI 73 D+P++S+V A A NI G+ + F+C+P D + V + + ++ LI Sbjct: 148 DEPSVSVVASANIATANIVAGTLKCPGFYCIPSSDIKGVEICAASKNLVALI 199
>MSA2_PLAFJ (P50499) Merozoite surface antigen 2 precursor (MSA-2)| Length = 264 Score = 30.4 bits (67), Expect = 1.2 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +2 Query: 41 GSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSFSLDPWEMFLIASAALRTMDRL 220 GS +S A T +S +R T+SAS S T +S + P IAS + R+ + Sbjct: 47 GSNTNSVGANAPNADTIASGSQRSTNSASTSTTNNGESQTTTPTAADTIASGSQRSTNSA 106 Query: 221 GSST 232 +ST Sbjct: 107 STST 110
>MSA2_PLAFF (P19599) Merozoite surface antigen 2 precursor (MSA-2) (Merozoite| 45 kDa surface antigen) (AG513) Length = 264 Score = 30.4 bits (67), Expect = 1.2 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +2 Query: 41 GSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSFSLDPWEMFLIASAALRTMDRL 220 GS +S A T +S +R T+SAS S T +S + P IAS + R+ + Sbjct: 47 GSNTNSVGANAPNADTIASGSQRSTNSASTSTTNNGESQTTTPTAADTIASGSQRSTNSA 106 Query: 221 GSST 232 +ST Sbjct: 107 STST 110
>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I| Length = 536 Score = 30.4 bits (67), Expect = 1.2 Identities = 22/65 (33%), Positives = 36/65 (55%) Frame = +2 Query: 5 ASSRCWTCPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSFSLDPWEMFL 184 ASS T S++SSSS+ ++ +S++L TSS+S S T + S +L L Sbjct: 75 ASSSFITSLVSSSSQQSSSSSASLTSSSSATL----TSSSSASPTSSSSSHALSSSSSSL 130 Query: 185 IASAA 199 +AS++ Sbjct: 131 VASSS 135
>SNX41_SCHPO (O60107) Sorting nexin-41| Length = 586 Score = 29.6 bits (65), Expect = 2.1 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +2 Query: 29 PYMGGSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSF 157 P+ G RS+SSA+ + P+ S + +S + +Q N+SF Sbjct: 9 PFSGSDNRSASSAVNVEPKVEPSQHQGSSSVKENAISQPNESF 51
>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) (GTP-binding and GTPase activating protein 2) (GGAP2) Length = 1192 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +2 Query: 26 CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 127 CP GGS ++ SA T T++ PRR +S+AS Sbjct: 1148 CPGEGGSAATTPSAATTPSITATPSPRRRSSAAS 1181
>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +2 Query: 26 CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 127 CP GGS ++ SA T T++ PRR +S+AS Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +2 Query: 26 CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 127 CP GGS ++ SA T T++ PRR +S+AS Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175
>PKHD1_HUMAN (Q8TCZ9) Polycystic kidney and hepatic disease 1 precursor| (Fibrocystin) (Polyductin) (Tigmin) Length = 4074 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -2 Query: 138 VPLQDAELVPLRGNEEEVLGLIVRAEELDRRDPPIYGHVQHRL 10 +PL A VP G EE ++V + R PP+ GH + +L Sbjct: 754 LPLITARSVPTEGTEEGSGLVLVTTQRRQRTSPPLGGHFRIQL 796
>Y066_METJA (Q60377) Hypothetical protein MJ0066| Length = 480 Score = 28.5 bits (62), Expect = 4.7 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Frame = -2 Query: 234 RVDDPNLSIVRRAADAIRNISHGSSEKL*FFCVPLQDAELVPLRGNEEEVLGLIVRAEE- 58 RV L++V +++ I+N+ G K+ FF +D + + N EE L+VRA E Sbjct: 177 RVVGVGLAVV--SSEDIKNMEKGKVVKVRFFIKDNEDYKPGKIYDNLEEAFDLMVRANEG 234 Query: 57 -LDRRDPPIYGHVQHRLEAL 1 +D + G +++ E + Sbjct: 235 VIDNYERNAIGFIKNTYEKI 254
>KCC4_YEAST (P25389) Probable serine/threonine-protein kinase KCC4 (EC| 2.7.11.1) Length = 1037 Score = 28.5 bits (62), Expect = 4.7 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = +2 Query: 44 SRRSSSSALTMRPRTSSSLPRRGTS---SASCSGTQKNQSFSL 163 S SSSS+L + R+ S PRR TS S S ++K SF L Sbjct: 389 STLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLL 431
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 28.1 bits (61), Expect = 6.2 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 41 GSRRSSSSALTMRPRTSSSLP-RRGTSSASCSGTQKNQS 154 G+ SSSS T P TSSS P TSS S + TQ + + Sbjct: 45 GTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSST 83
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 28.1 bits (61), Expect = 6.2 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 41 GSRRSSSSALTMRPRTSSSLP-RRGTSSASCSGTQKNQS 154 G+ SSSS T P TSSS P TSS S + TQ + + Sbjct: 45 GTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSST 83
>VGLZ_EHV1K (P32515) Glycoprotein precursor| Length = 383 Score = 27.7 bits (60), Expect = 8.1 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +2 Query: 41 GSRRSSSSALTMRPRTSSSLP-RRGTSSASCSGTQKN 148 G+ SSSS T P TSSS P TSS S + QK+ Sbjct: 45 GTTNSSSSPTTSPPTTSSSPPTSTHTSSPSTANAQKH 81
>COQ3_MOUSE (Q8BMS4) Hexaprenyldihydroxybenzoate methyltransferase,| mitochondrial precursor (EC 2.1.1.114) (Dihydroxyhexaprenylbenzoate methyltransferase) (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB methyltransferase) (DHHB-MT) (DHHB-MTas Length = 370 Score = 27.7 bits (60), Expect = 8.1 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 101 PRRGTSSASCSGTQKNQSFSLDPWEM 178 P R TS ++ SGTQ ++ + PWE+ Sbjct: 29 PPRLTSRSAYSGTQLTRNLQIKPWEL 54
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -2 Query: 129 QDAELVPLRGNEEEVLGLIVRAEELDRRDPPIYGH 25 Q+ E +PLR N+ L ++ +RR PP GH Sbjct: 2031 QELEKLPLRENKRVPLTALLNQSRGERRGPPSDGH 2065 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,092,585 Number of Sequences: 219361 Number of extensions: 787917 Number of successful extensions: 3556 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3239 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3460 length of database: 80,573,946 effective HSP length: 62 effective length of database: 66,973,564 effective search space used: 1607365536 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
