ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29e04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476019.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3273 Score = 248 bits (125), Expect = 7e-63 Identities = 179/197 (90%) Strand = Plus / Plus Query: 55 gagctcttccgccctcacaatgaggcccaggacttcctcttcattgccacggagaggtac 114 ||||||||||||||||| |||||| | ||||||||||| |||||||| || || || ||| Sbjct: 196 gagctcttccgccctcataatgagactcaggacttccttttcattgcgactgaaagatac 255 Query: 115 aagttctgcgtcctgcagtgggacgcagaaaaatcagagcttctcactagatccatggga 174 || ||||| || ||||||||||| | ||||||||| ||||||||||||||| | |||||| Sbjct: 256 aaattctgtgttctgcagtgggatggagaaaaatcggagcttctcactagagcgatggga 315 Query: 175 gatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcatcgaccct 234 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 316 gatgtttctgatcgcattggtcgccctacggacaatggacagattgggatcatcgaccct 375 Query: 235 gactgtagacttattgg 251 ||||||||||||||||| Sbjct: 376 gactgtagacttattgg 392
>dbj|AK067427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107E16, full insert sequence Length = 4136 Score = 248 bits (125), Expect = 7e-63 Identities = 179/197 (90%) Strand = Plus / Plus Query: 55 gagctcttccgccctcacaatgaggcccaggacttcctcttcattgccacggagaggtac 114 ||||||||||||||||| |||||| | ||||||||||| |||||||| || || || ||| Sbjct: 233 gagctcttccgccctcataatgagactcaggacttccttttcattgcgactgaaagatac 292 Query: 115 aagttctgcgtcctgcagtgggacgcagaaaaatcagagcttctcactagatccatggga 174 || ||||| || ||||||||||| | ||||||||| ||||||||||||||| | |||||| Sbjct: 293 aaattctgtgttctgcagtgggatggagaaaaatcggagcttctcactagagcgatggga 352 Query: 175 gatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcatcgaccct 234 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 353 gatgtttctgatcgcattggtcgccctacggacaatggacagattgggatcatcgaccct 412 Query: 235 gactgtagacttattgg 251 ||||||||||||||||| Sbjct: 413 gactgtagacttattgg 429
>dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026I01, full insert sequence Length = 3792 Score = 248 bits (125), Expect = 7e-63 Identities = 179/197 (90%) Strand = Plus / Plus Query: 55 gagctcttccgccctcacaatgaggcccaggacttcctcttcattgccacggagaggtac 114 ||||||||||||||||| |||||| | ||||||||||| |||||||| || || || ||| Sbjct: 312 gagctcttccgccctcataatgagactcaggacttccttttcattgcgactgaaagatac 371 Query: 115 aagttctgcgtcctgcagtgggacgcagaaaaatcagagcttctcactagatccatggga 174 || ||||| || ||||||||||| | ||||||||| ||||||||||||||| | |||||| Sbjct: 372 aaattctgtgttctgcagtgggatggagaaaaatcggagcttctcactagagcgatggga 431 Query: 175 gatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcatcgaccct 234 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 432 gatgtttctgatcgcattggtcgccctacggacaatggacagattgggatcatcgaccct 491 Query: 235 gactgtagacttattgg 251 ||||||||||||||||| Sbjct: 492 gactgtagacttattgg 508
>dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB mRNA for UV-damaged DNA binding protein, complete cds Length = 3658 Score = 248 bits (125), Expect = 7e-63 Identities = 179/197 (90%) Strand = Plus / Plus Query: 55 gagctcttccgccctcacaatgaggcccaggacttcctcttcattgccacggagaggtac 114 ||||||||||||||||| |||||| | ||||||||||| |||||||| || || || ||| Sbjct: 312 gagctcttccgccctcataatgagactcaggacttccttttcattgcgactgaaagatac 371 Query: 115 aagttctgcgtcctgcagtgggacgcagaaaaatcagagcttctcactagatccatggga 174 || ||||| || ||||||||||| | ||||||||| ||||||||||||||| | |||||| Sbjct: 372 aaattctgtgttctgcagtgggatggagaaaaatcggagcttctcactagagcgatggga 431 Query: 175 gatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcatcgaccct 234 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 432 gatgtttctgatcgcattggtcgccctacggacaatggacagattgggatcatcgaccct 491 Query: 235 gactgtagacttattgg 251 ||||||||||||||||| Sbjct: 492 gactgtagacttattgg 508
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 79.8 bits (40), Expect = 4e-12 Identities = 46/48 (95%) Strand = Plus / Plus Query: 169 atgggagatgtttctgatcgcatcggccgccctacggacaatggacag 216 ||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 71678 atgggagatgtttctgatcgcattggtcgccctacggacaatggacag 71725 Score = 79.8 bits (40), Expect = 4e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 73 aatgaggcccaggacttcctcttcattgccacggagaggtacaagttctgcgtcctgcag 132 |||||| | ||||||||||| |||||||| || || || ||||| ||||| || |||||| Sbjct: 71070 aatgagactcaggacttccttttcattgcgactgaaagatacaaattctgtgttctgcag 71129 Query: 133 tgggacgcagaaaaatcagagcttctcactag 164 ||||| | ||||||||| |||||||||||||| Sbjct: 71130 tgggatggagaaaaatcggagcttctcactag 71161 Score = 73.8 bits (37), Expect = 2e-10 Identities = 37/37 (100%) Strand = Plus / Plus Query: 215 agattgggatcatcgaccctgactgtagacttattgg 251 ||||||||||||||||||||||||||||||||||||| Sbjct: 71864 agattgggatcatcgaccctgactgtagacttattgg 71900
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 79.8 bits (40), Expect = 4e-12 Identities = 46/48 (95%) Strand = Plus / Plus Query: 169 atgggagatgtttctgatcgcatcggccgccctacggacaatggacag 216 ||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 29293021 atgggagatgtttctgatcgcattggtcgccctacggacaatggacag 29293068 Score = 79.8 bits (40), Expect = 4e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 73 aatgaggcccaggacttcctcttcattgccacggagaggtacaagttctgcgtcctgcag 132 |||||| | ||||||||||| |||||||| || || || ||||| ||||| || |||||| Sbjct: 29292413 aatgagactcaggacttccttttcattgcgactgaaagatacaaattctgtgttctgcag 29292472 Query: 133 tgggacgcagaaaaatcagagcttctcactag 164 ||||| | ||||||||| |||||||||||||| Sbjct: 29292473 tgggatggagaaaaatcggagcttctcactag 29292504 Score = 73.8 bits (37), Expect = 2e-10 Identities = 37/37 (100%) Strand = Plus / Plus Query: 215 agattgggatcatcgaccctgactgtagacttattgg 251 ||||||||||||||||||||||||||||||||||||| Sbjct: 29293207 agattgggatcatcgaccctgactgtagacttattgg 29293243
>ref|NM_118228.2| Arabidopsis thaliana DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) AT4G21100 (DDB1B) mRNA, complete cds Length = 3390 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 169 atgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgg 221 ||||| |||||||||||||| || ||||| || || |||||||| |||||||| Sbjct: 310 atgggggatgtttctgatcgtataggccgaccgacagacaatggtcagattgg 362
>ref|NM_116781.2| Arabidopsis thaliana DDB1A; DNA binding / nucleic acid binding AT4G05420 (DDB1A) mRNA, complete cds Length = 3714 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 169 atgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgg 221 ||||| |||||||||||||| || ||||| || || |||||||| |||||||| Sbjct: 477 atgggggatgtttctgatcgtataggccggccaacagacaatggtcagattgg 529
>gb|AY074258.1| Arabidopsis thaliana At4g05420 mRNA sequence Length = 1988 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 169 atgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgg 221 ||||| |||||||||||||| || ||||| || || |||||||| |||||||| Sbjct: 432 atgggggatgtttctgatcgtataggccggccaacagacaatggtcagattgg 484
>dbj|AK220648.1| Arabidopsis thaliana mRNA for UV-damaged DNA-binding protein-like, complete cds, clone: RAFL21-64-B09 Length = 3586 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 169 atgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgg 221 ||||| |||||||||||||| || ||||| || || |||||||| |||||||| Sbjct: 464 atgggggatgtttctgatcgtataggccgaccgacagacaatggtcagattgg 516
>gb|BT001905.1| Arabidopsis thaliana clone C104978 putative UV-damaged DNA binding factor (At4g05420) mRNA, complete cds Length = 3298 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 169 atgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgg 221 ||||| |||||||||||||| || ||||| || || |||||||| |||||||| Sbjct: 310 atgggggatgtttctgatcgtataggccggccaacagacaatggtcagattgg 362
>gb|AY452480.1| Lycopersicon esculentum UV damaged DNA binding protein 1 (DDB1) mRNA, complete cds Length = 3273 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 25 gtgcccatatatgggaggatcgcgac 50 ||||| |||||||||||||||||||| Sbjct: 166 gtgccaatatatgggaggatcgcgac 191
>gb|AY531661.1| Lycopersicon cheesmanii UV-damaged DNA binding protein 1 (hp1) gene, promoter and complete cds Length = 23464 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 25 gtgcccatatatgggaggatcgcgac 50 ||||| |||||||||||||||||||| Sbjct: 7520 gtgccaatatatgggaggatcgcgac 7545
>gb|AY531660.1| Lycopersicon esculentum UV-damaged DNA binding protein 1 (hp1) mRNA, complete cds Length = 3454 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 25 gtgcccatatatgggaggatcgcgac 50 ||||| |||||||||||||||||||| Sbjct: 218 gtgccaatatatgggaggatcgcgac 243
>ref|XM_756092.1| Ustilago maydis 521 hypothetical protein (UM05038.1) partial mRNA Length = 3393 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 agaggtacaagttctgcgtc 126 |||||||||||||||||||| Sbjct: 3187 agaggtacaagttctgcgtc 3168
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 agggcctccagccgatgctggacg 25 ||||| |||||||||||||||||| Sbjct: 2141500 agggcatccagccgatgctggacg 2141477
>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54 Length = 198715 Score = 40.1 bits (20), Expect = 3.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 169 atgggagatgtttctgatcgcatcggccgccctacggacaatgg 212 ||||| |||||||||||||| || ||||| || || |||||||| Sbjct: 75458 atgggggatgtttctgatcgtataggccgaccgacagacaatgg 75415
>emb|AL161503.2|ATCHRIV15 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 15 Length = 199987 Score = 40.1 bits (20), Expect = 3.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 169 atgggagatgtttctgatcgcatcggccgccctacggacaatgg 212 ||||| |||||||||||||| || ||||| || || |||||||| Sbjct: 86183 atgggggatgtttctgatcgtataggccggccaacagacaatgg 86226
>emb|AL021960.2|ATF7J7 Arabidopsis thaliana DNA chromosome 4, BAC clone F7J7 (ESSA project) Length = 91387 Score = 40.1 bits (20), Expect = 3.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 169 atgggagatgtttctgatcgcatcggccgccctacggacaatgg 212 ||||| |||||||||||||| || ||||| || || |||||||| Sbjct: 17255 atgggggatgtttctgatcgtataggccgaccgacagacaatgg 17212
>emb|AJ622830.1| Ustilago maydis acu2 gene for K, P-type ATPase Length = 3393 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 agaggtacaagttctgcgtc 126 |||||||||||||||||||| Sbjct: 3187 agaggtacaagttctgcgtc 3168
>gb|U17352.1|TAU17352 Thermus aquaticus L-glutamine:D-fructose-6-P amidotransferase (glmS) gene, complete cds and s-layer P100 (slp) gene, partial cds Length = 2560 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aggcccaggacttcctcttc 96 |||||||||||||||||||| Sbjct: 1910 aggcccaggacttcctcttc 1929
>gb|AC012477.1|AC012477 Genomic Sequence For Arabidopsis thaliana Clone C6L9, Chromosome IV, complete sequence Length = 145453 Score = 40.1 bits (20), Expect = 3.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 169 atgggagatgtttctgatcgcatcggccgccctacggacaatgg 212 ||||| |||||||||||||| || ||||| || || |||||||| Sbjct: 29111 atgggggatgtttctgatcgtataggccggccaacagacaatgg 29068 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,834,238 Number of Sequences: 3902068 Number of extensions: 1834238 Number of successful extensions: 29532 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29491 Number of HSP's gapped (non-prelim): 41 length of query: 262 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 240 effective length of database: 17,147,199,772 effective search space: 4115327945280 effective search space used: 4115327945280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
