ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TERF2_MOUSE (O35144) Telomeric repeat-binding factor 2 (TTAGGG r... 30 3.8
2ATX4_ARATH (Q9SUE7) Histone-lysine N-methyltransferase ATX4 (EC ... 30 3.8
3MYOB_DICDI (P34092) Myosin IB heavy chain 29 5.0
4NOLA1_BRARE (Q7ZVE0) H/ACA ribonucleoprotein complex subunit 1 (... 29 6.6
5MAM_DROME (P21519) Neurogenic protein mastermind 29 6.6
6ATX5_ARATH (Q8GZ42) Histone-lysine N-methyltransferase ATX5 (EC ... 28 8.6

>TERF2_MOUSE (O35144) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding|
           factor 2) (Telomeric DNA-binding protein)
          Length = 495

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 336 GGGGRELRSGFL*GCRGANDGARRRRHLAAPCAGSAAEQG 455
           GGGG    SG     R +  G R RR    P  G AAE+G
Sbjct: 3   GGGGSSDSSGRAASRRASRSGGRARRGRHEPGLGGAAERG 42



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>ATX4_ARATH (Q9SUE7) Histone-lysine N-methyltransferase ATX4 (EC 2.1.1.43)|
           (Trithorax-homolog protein 4) (TRX-homolog protein 4)
           (Trithorax 4) (Protein SET DOMAIN GROUP 16)
          Length = 990

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 112 ILTEKTRRAQATLKGFVAERGYACACD-SSCGYRRDGKALSAVEFEKHAGAKSKN 273
           +L +K     A ++G    R +   C   SCG ++  KALS  E+E+H G+KSKN
Sbjct: 488 VLPDKVIVVCAGVEGVYFPRLHLVVCKCGSCGPKK--KALS--EWERHTGSKSKN 538



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>MYOB_DICDI (P34092) Myosin IB heavy chain|
          Length = 1111

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +3

Query: 267  QEPERPHLPPQRHLALRPLPRAQGGGGRELRSGFL*GCRGANDGARRRRHLAAPCAGSAA 446
            Q+ +RP   PQ+    RP+P+ Q GGG                     R + AP  G A 
Sbjct: 962  QQQQRPMPQPQQGGGARPMPQPQQGGG--------------------ARPMGAPQQGGAP 1001

Query: 447  EQG 455
            +QG
Sbjct: 1002 QQG 1004



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>NOLA1_BRARE (Q7ZVE0) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar|
           protein family A member 1)
          Length = 226

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
 Frame = +3

Query: 288 LPPQRHLALRPLPRAQ------GGGGRELRSGFL*GCRGANDGAR 404
           LP QR L   P  +        GGGGR  R G   G RGAN G R
Sbjct: 146 LPLQRFLPRPPGEKGPPRGGRGGGGGRGGRGGGFRGGRGANGGGR 190



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>MAM_DROME (P21519) Neurogenic protein mastermind|
          Length = 1594

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 267 QEPERPHLPPQRHLALRPLPRAQGGGGRELRSGFL 371
           Q+P++ HLPPQ H    P P    G G  ++  FL
Sbjct: 704 QQPQQQHLPPQFHQQKGPGP----GAGMNVQQNFL 734



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>ATX5_ARATH (Q8GZ42) Histone-lysine N-methyltransferase ATX5 (EC 2.1.1.43)|
           (Trithorax-homolog protein 5) (TRX-homolog protein 5)
           (Protein SET DOMAIN GROUP 29)
          Length = 1043

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +1

Query: 181 CACDSSCGYRRDGKALSAVEFEKHAGAKSKN 273
           C C  SCG  R  KALS  E+E+H G+K+KN
Sbjct: 519 CKC-GSCGPER--KALS--EWERHTGSKAKN 544


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.131    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,633,215
Number of Sequences: 219361
Number of extensions: 638600
Number of successful extensions: 1804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1804
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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