ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl29d10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY579884.1| Hordeum vulgare AML6 mRNA, complete cds Length = 3269 Score = 888 bits (448), Expect = 0.0 Identities = 454/456 (99%) Strand = Plus / Plus Query: 19 agagaaagcgtccttcttcctcctccccgactccggccggcgaggtcgggacggagctcc 78 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agagaaagcgtccttcttcctcctccccgactccggccggcgaggtcgggacggagctcc 60 Query: 79 gccgctccaccgagccgcggatcggtggcgtaggcagttgaggggctgaggaggtgaaag 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gccgctccaccgagccgcggatcggtggcgtaggcagttgaggggctgaggaggtgaaag 120 Query: 139 aaagaggcaacgaaagcacccatggtgatagcttccggagtgattgacaggggacacctg 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aaagaggcaacgaaagcacccatggtgatagcttccggagtgattgacaggggacacctg 180 Query: 199 tcctcgttcggcggcccaccgccagactcgtcgtcgtcgttcttctccgaagaccttgtc 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tcctcgttcggcggcccaccgccagactcgtcgtcgtcgttcttctccgaagaccttgtc 240 Query: 259 cccacagagaggcaggttgggttctggaaatcggagtcaatggtggatcagagagggagc 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 cccacagagaggcaggttgggttctggaaatcggagtcaatggtggatcagagagggagc 300 Query: 319 aagccagtttttgcttctccacttgagaagatccatccgacgggagcaaatcctgaaggc 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aagccagtttttgcttctccacttgagaagatccatccgacgggagcaaatcctgaaggc 360 Query: 379 agtctggaacaaacagggggccaagtcttcaagggcctagatgcccttcgcgtcagtaag 438 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 agtctggaacaaacagggggccaagtcttcaagggcctagatgcccttcgcgtcagtaaa 420 Query: 439 gcgatggggcaagggaatgcgtcaagttcgccatca 474 |||||||||||||| ||||||||||||||||||||| Sbjct: 421 gcgatggggcaaggaaatgcgtcaagttcgccatca 456
>dbj|AB244278.1| Oryza sativa (japonica cultivar-group) OML3 mRNA for MEI2-like RNA binding protein, complete cds Length = 2868 Score = 129 bits (65), Expect = 9e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 250 gaccttgtccccacagagaggcaggttgggttctggaaatcggagtcaatggtggatcag 309 ||||||||||| ||||||||||| ||||| || ||||| || ||||||||||||||||| Sbjct: 91 gaccttgtccctacagagaggcaagttggattttggaattcagagtcaatggtggatcac 150 Query: 310 agagggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaat 369 | |||||||||| |||||||||||||||||||||| |||||||| || | ||||||||| Sbjct: 151 aaagggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaat 210 Query: 370 c 370 | Sbjct: 211 c 211 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 160 atggtgatagcttccggagtgattgacaggggacacctgtc 200 |||||||||||||| |||| ||||||||| | |||||||| Sbjct: 1 atggtgatagcttctggagccattgacaggaggcacctgtc 41
>dbj|AK121634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050M15, full insert sequence Length = 3869 Score = 129 bits (65), Expect = 9e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 250 gaccttgtccccacagagaggcaggttgggttctggaaatcggagtcaatggtggatcag 309 ||||||||||| ||||||||||| ||||| || ||||| || ||||||||||||||||| Sbjct: 742 gaccttgtccctacagagaggcaagttggattttggaattcagagtcaatggtggatcac 801 Query: 310 agagggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaat 369 | |||||||||| |||||||||||||||||||||| |||||||| || | ||||||||| Sbjct: 802 aaagggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaat 861 Query: 370 c 370 | Sbjct: 862 c 862 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 154 gcacccatggtgatagcttccggagtgattgacaggggacacctgtc 200 ||||| |||||||||||||| |||| ||||||||| | |||||||| Sbjct: 646 gcacctatggtgatagcttctggagccattgacaggaggcacctgtc 692
>dbj|AK120322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057C20, full insert sequence Length = 3454 Score = 129 bits (65), Expect = 9e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 250 gaccttgtccccacagagaggcaggttgggttctggaaatcggagtcaatggtggatcag 309 ||||||||||| ||||||||||| ||||| || ||||| || ||||||||||||||||| Sbjct: 305 gaccttgtccctacagagaggcaagttggattttggaattcagagtcaatggtggatcac 364 Query: 310 agagggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaat 369 | |||||||||| |||||||||||||||||||||| |||||||| || | ||||||||| Sbjct: 365 aaagggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaat 424 Query: 370 c 370 | Sbjct: 425 c 425 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 154 gcacccatggtgatagcttccggagtgattgacaggggacacctgtc 200 ||||| |||||||||||||| |||| ||||||||| | |||||||| Sbjct: 209 gcacctatggtgatagcttctggagccattgacaggaggcacctgtc 255
>dbj|AK074004.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075L18, full insert sequence Length = 3468 Score = 129 bits (65), Expect = 9e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 250 gaccttgtccccacagagaggcaggttgggttctggaaatcggagtcaatggtggatcag 309 ||||||||||| ||||||||||| ||||| || ||||| || ||||||||||||||||| Sbjct: 341 gaccttgtccctacagagaggcaagttggattttggaattcagagtcaatggtggatcac 400 Query: 310 agagggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaat 369 | |||||||||| |||||||||||||||||||||| |||||||| || | ||||||||| Sbjct: 401 aaagggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaat 460 Query: 370 c 370 | Sbjct: 461 c 461 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 154 gcacccatggtgatagcttccggagtgattgacaggggacacctgtc 200 ||||| |||||||||||||| |||| ||||||||| | |||||||| Sbjct: 245 gcacctatggtgatagcttctggagccattgacaggaggcacctgtc 291
>gb|AY579890.1| Hordeum vulgare AML6 gene, partial cds Length = 480 Score = 99.6 bits (50), Expect = 8e-18 Identities = 58/61 (95%) Strand = Plus / Plus Query: 414 cctagatgcccttcgcgtcagtaaggcgatggggcaagggaatgcgtcaagttcgccatc 473 |||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 2 cctagatgnccttcgcgtcagtaaagcgatggggcaaggaaatgcgtcaagttcgccatc 61 Query: 474 a 474 | Sbjct: 62 a 62
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 312 agggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaatc 370 |||||||||| |||||||||||||||||||||| |||||||| || | |||||||||| Sbjct: 134425 agggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaatc 134367 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 154 gcacccatggtgatagcttccggagtgattgacaggggacacctgtc 200 ||||| |||||||||||||| |||| ||||||||| | |||||||| Sbjct: 135316 gcacctatggtgatagcttctggagccattgacaggaggcacctgtc 135270 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 266 agaggcaggttgggttctggaaatcggagtcaatggtggatca 308 ||||||| ||||| || ||||| || ||||||||||||||||| Sbjct: 135097 agaggcaagttggattttggaattcagagtcaatggtggatca 135055
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 312 agggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaatc 370 |||||||||| |||||||||||||||||||||| |||||||| || | |||||||||| Sbjct: 16613 agggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaatc 16555 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 154 gcacccatggtgatagcttccggagtgattgacaggggacacctgtc 200 ||||| |||||||||||||| |||| ||||||||| | |||||||| Sbjct: 17504 gcacctatggtgatagcttctggagccattgacaggaggcacctgtc 17458 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 266 agaggcaggttgggttctggaaatcggagtcaatggtggatca 308 ||||||| ||||| || ||||| || ||||||||||||||||| Sbjct: 17285 agaggcaagttggattttggaattcagagtcaatggtggatca 17243
>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10, complete sequence Length = 156772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 312 agggagcaagccagtttttgcttctccacttgagaagatccatccgacgggagcaaatc 370 |||||||||| |||||||||||||||||||||| |||||||| || | |||||||||| Sbjct: 134425 agggagcaagtcagtttttgcttctccacttgaaaagatccaacccaatggagcaaatc 134367 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 154 gcacccatggtgatagcttccggagtgattgacaggggacacctgtc 200 ||||| |||||||||||||| |||| ||||||||| | |||||||| Sbjct: 135316 gcacctatggtgatagcttctggagccattgacaggaggcacctgtc 135270 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 266 agaggcaggttgggttctggaaatcggagtcaatggtggatca 308 ||||||| ||||| || ||||| || ||||||||||||||||| Sbjct: 135097 agaggcaagttggattttggaattcagagtcaatggtggatca 135055
>gb|AY579885.1| Sorghum bicolor AML1 mRNA, complete cds Length = 3140 Score = 65.9 bits (33), Expect = 1e-07 Identities = 125/155 (80%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 238 ttcttctccgaagaccttgtccccacagagaggcaggttgggttctggaaatcg---gag 294 ||||||||| | || || |||||||| |||||||| ||||| ||||||||||| | | Sbjct: 477 ttcttctcccaggatctcgtccccactgagaggcaagttggattctggaaatcatcaggg 536 Query: 295 tcaatggtggatcagagagggagcaagccagtttttgcttctccacttgagaagatccat 354 |||||||| |||| | ||||||| |||| |||| ||||||||||||| ||| ||||| Sbjct: 537 tcaatggtccatcacaaagggagcgagcctattttcacttctccacttgataaggtccat 596 Query: 355 ccgacgggagcaaatcctgaaggcagtctggaaca 389 |||| ||| ||| ||||| ||| |||||||||| Sbjct: 597 ccgatgggctcaagtcctgcaggtggtctggaaca 631 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 154 gcacccatggtgatagcttccggagtgattgacaggggacacctgtcctcgtt 206 ||||| ||||||||||| ||||||| |||||||| | ||||||||| |||| Sbjct: 393 gcacctatggtgatagcatccggagccgttgacaggagccacctgtccccgtt 445
>ref|NM_142205.2| Drosophila melanogaster CG6130-RA (CG6130), mRNA Length = 1545 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttctccg 247 ||||||||||||||||||||||| Sbjct: 286 ctcgtcgtcgtcgttcttctccg 264
>gb|AY051426.1| Drosophila melanogaster GH10346 full length cDNA Length = 1517 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttctccg 247 ||||||||||||||||||||||| Sbjct: 240 ctcgtcgtcgtcgttcttctccg 218
>gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, region 88E-88F, BAC clone BACR13A02, complete sequence Length = 166141 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 225 ctcgtcgtcgtcgttcttctccg 247 ||||||||||||||||||||||| Sbjct: 141723 ctcgtcgtcgtcgttcttctccg 141745
>gb|AC007769.3|AC007769 Drosophila melanogaster, chromosome 3R, region 88F-88F, BAC clone BACR17K19, complete sequence Length = 167918 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 225 ctcgtcgtcgtcgttcttctccg 247 ||||||||||||||||||||||| Sbjct: 41817 ctcgtcgtcgtcgttcttctccg 41839
>gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46 of 118 of the complete sequence Length = 236375 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 225 ctcgtcgtcgtcgttcttctccg 247 ||||||||||||||||||||||| Sbjct: 186155 ctcgtcgtcgtcgttcttctccg 186177
>ref|NM_179270.1| Arabidopsis thaliana DNA binding AT1G06230 transcript variant AT1G06230.2 mRNA, complete cds Length = 3141 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 ttttgcttctccacttgagaag 348 |||||||||||||||||||||| Sbjct: 2573 ttttgcttctccacttgagaag 2552
>ref|NM_100505.2| Arabidopsis thaliana DNA binding AT1G06230 transcript variant AT1G06230.1 mRNA, complete cds Length = 3194 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 ttttgcttctccacttgagaag 348 |||||||||||||||||||||| Sbjct: 2626 ttttgcttctccacttgagaag 2605
>emb|CR731558.2|CNS0GREZ Tetraodon nigroviridis full-length cDNA Length = 2145 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttctcc 246 |||||||||||||||||||||| Sbjct: 1077 ctcgtcgtcgtcgttcttctcc 1056
>emb|CR728100.2|CNS0GOQY Tetraodon nigroviridis full-length cDNA Length = 2145 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttctcc 246 |||||||||||||||||||||| Sbjct: 1077 ctcgtcgtcgtcgttcttctcc 1056
>emb|CR683307.2|CNS0FQ6V Tetraodon nigroviridis full-length cDNA Length = 1470 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttctcc 246 |||||||||||||||||||||| Sbjct: 617 ctcgtcgtcgtcgttcttctcc 596
>emb|BX816821.1|CNS0AEK3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH6ZE12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2748 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 ttttgcttctccacttgagaag 348 |||||||||||||||||||||| Sbjct: 2298 ttttgcttctccacttgagaag 2277
>gb|AC025290.3|F9P14 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence Length = 48872 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 ttttgcttctccacttgagaag 348 |||||||||||||||||||||| Sbjct: 35014 ttttgcttctccacttgagaag 34993
>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome Length = 1315030 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 323 cagtttttgcttctccacttgagaa 347 |||||||||||||||||| |||||| Sbjct: 75935 cagtttttgcttctccacctgagaa 75959
>emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chromosome 10 Contains the 5' end of the PAX2 gene for paired box gene 2 and fifteen CpG islands, complete sequence Length = 187101 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 ccttgtccccacagagaggca 272 ||||||||||||||||||||| Sbjct: 159691 ccttgtccccacagagaggca 159671
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 330 tgcttctccacttgagaagat 350 ||||||||||||||||||||| Sbjct: 3064002 tgcttctccacttgagaagat 3064022
>ref|XM_514528.1| PREDICTED: Pan troglodytes sorting nexin 5 (LOC458110), mRNA Length = 1959 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ggaaatcggagtcaatggtg 303 |||||||||||||||||||| Sbjct: 1837 ggaaatcggagtcaatggtg 1818
>gb|BT012471.1| Drosophila melanogaster RE24802 full insert cDNA Length = 4948 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 3978 ctcgtcgtcgtcgttcttct 3959
>gb|AC164086.3| Mus musculus BAC clone RP23-25E6 from chromosome 13, complete sequence Length = 214085 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gggctgaggaggtgaaagaa 140 |||||||||||||||||||| Sbjct: 61096 gggctgaggaggtgaaagaa 61077
>gb|BT011364.1| Drosophila melanogaster RE66627 full insert cDNA Length = 4523 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 4399 ctcgtcgtcgtcgttcttct 4380
>emb|BX323043.5| Human DNA sequence from clone CTD-2510L9 on chromosome 1, complete sequence Length = 41309 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tggatcagagagggagcaag 321 |||||||||||||||||||| Sbjct: 28348 tggatcagagagggagcaag 28367
>emb|AL023802.1|HS983L19 Human DNA sequence from clone RP5-983L19 on chromosome 22q13.31-33, complete sequence Length = 77022 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 gtaaggcgatggggcaaggg 453 |||||||||||||||||||| Sbjct: 23153 gtaaggcgatggggcaaggg 23134
>gb|AY119555.1| Drosophila melanogaster GH28665 full insert cDNA Length = 3697 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 2711 ctcgtcgtcgtcgttcttct 2692
>ref|NM_206314.1| Drosophila melanogaster CG8177-RH, transcript variant H (CG8177), mRNA Length = 4015 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 3905 ctcgtcgtcgtcgttcttct 3886
>ref|NM_206313.1| Drosophila melanogaster CG8177-RI, transcript variant I (CG8177), mRNA Length = 4189 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 4079 ctcgtcgtcgtcgttcttct 4060
>ref|NM_206312.1| Drosophila melanogaster CG8177-RJ, transcript variant J (CG8177), mRNA Length = 3910 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 3800 ctcgtcgtcgtcgttcttct 3781
>ref|NM_206311.1| Drosophila melanogaster CG8177-RK, transcript variant K (CG8177), mRNA Length = 4111 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 4001 ctcgtcgtcgtcgttcttct 3982
>gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, complete sequence Length = 195110 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aagaggcaacgaaagcaccc 159 |||||||||||||||||||| Sbjct: 61054 aagaggcaacgaaagcaccc 61035
>gb|AC007920.18| Homo sapiens 3 BAC RP11-208N14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173534 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 agttgaggggctgaggaggt 133 |||||||||||||||||||| Sbjct: 42382 agttgaggggctgaggaggt 42363
>ref|NM_168374.1| Drosophila melanogaster CG8177-RD, transcript variant D (CG8177), mRNA Length = 3819 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 3709 ctcgtcgtcgtcgttcttct 3690
>ref|NM_168373.1| Drosophila melanogaster CG8177-RE, transcript variant E (CG8177), mRNA Length = 4895 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 3910 ctcgtcgtcgtcgttcttct 3891
>ref|NM_168372.1| Drosophila melanogaster CG8177-RF, transcript variant F (CG8177), mRNA Length = 4509 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 4399 ctcgtcgtcgtcgttcttct 4380
>ref|NM_168371.1| Drosophila melanogaster CG8177-RC, transcript variant C (CG8177), mRNA Length = 4235 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 4125 ctcgtcgtcgtcgttcttct 4106
>ref|NM_168370.1| Drosophila melanogaster CG8177-RB, transcript variant B (CG8177), mRNA Length = 4088 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 3978 ctcgtcgtcgtcgttcttct 3959
>ref|NM_168369.1| Drosophila melanogaster CG8177-RG, transcript variant G (CG8177), mRNA Length = 5585 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 4600 ctcgtcgtcgtcgttcttct 4581
>gb|AC079015.8| Homo sapiens chromosome 8, clone RP11-489O18, complete sequence Length = 157122 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 gaggcaggttgggttctgga 286 |||||||||||||||||||| Sbjct: 42319 gaggcaggttgggttctgga 42338
>ref|NM_140100.1| Drosophila melanogaster CG8177-RA, transcript variant A (CG8177), mRNA Length = 5164 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 4179 ctcgtcgtcgtcgttcttct 4160
>gb|AC091220.3| Drosophila melanogaster 3L BAC RP98-7E7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179838 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 123725 ctcgtcgtcgtcgttcttct 123706
>gb|AY060460.1| Drosophila melanogaster SD03289 full length cDNA Length = 2930 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 2804 ctcgtcgtcgtcgttcttct 2785
>gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207228 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tgtagagagggagagaaagc 27 |||||||||||||||||||| Sbjct: 13107 tgtagagagggagagaaagc 13126
>gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 135177 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tgtagagagggagagaaagc 27 |||||||||||||||||||| Sbjct: 89716 tgtagagagggagagaaagc 89735
>gb|AC084425.1|CBRG01B5 Caenorhabditis briggsae cosmid G01B5, complete sequence Length = 42310 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 gaggaggtgaaagaaagagg 145 |||||||||||||||||||| Sbjct: 25887 gaggaggtgaaagaaagagg 25868
>gb|AC011727.16| Homo sapiens chromosome 8, clone RP11-10H7, complete sequence Length = 152530 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aagaggcaacgaaagcaccc 159 |||||||||||||||||||| Sbjct: 130335 aagaggcaacgaaagcaccc 130316
>emb|BX005055.5| Zebrafish DNA sequence from clone CH211-188N23 in linkage group 23, complete sequence Length = 156598 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 agagagggagagaaagcgtccttc 34 |||||| ||||||||||||||||| Sbjct: 49916 agagagagagagaaagcgtccttc 49939
>gb|AE003550.4| Drosophila melanogaster chromosome 3L, section 35 of 83 of the complete sequence Length = 304975 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctcgtcgtcgtcgttcttct 244 |||||||||||||||||||| Sbjct: 22507 ctcgtcgtcgtcgttcttct 22488
>gb|AC147612.5| Mus musculus BAC clone RP23-374K9 from 6, complete sequence Length = 190156 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 tccttcttcctcctccccgactcc 52 |||||||||||||||||| ||||| Sbjct: 50500 tccttcttcctcctcccccactcc 50523
>emb|AL928706.6| Mouse DNA sequence from clone RP23-54E16 on chromosome 2, complete sequence Length = 205358 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ttgaggggctgaggaggtga 135 |||||||||||||||||||| Sbjct: 19619 ttgaggggctgaggaggtga 19638 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,457,497 Number of Sequences: 3902068 Number of extensions: 4457497 Number of successful extensions: 130782 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130552 Number of HSP's gapped (non-prelim): 230 length of query: 480 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 458 effective length of database: 17,147,199,772 effective search space: 7853417495576 effective search space used: 7853417495576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
