ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29d08 |
|---|---|
| Clone Library Name | barley_pub |
>GLR35_ARATH (Q9SW97) Glutamate receptor 3.5 precursor (Ligand-gated ion channel| 3.5) (Ionotropic glutamate receptor GLR6) Length = 953 Score = 138 bits (348), Expect = 6e-33 Identities = 65/93 (69%), Positives = 80/93 (86%) Frame = +2 Query: 197 PSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIE 376 PS V VGALFTYDS IGRAA+LA A++D+NAD+++L GT+L+++ QDTNCSGFVGT+ Sbjct: 45 PSSVNVGALFTYDSFIGRAAKLAFVAAIEDINADQSILRGTKLNIVFQDTNCSGFVGTMG 104 Query: 377 ALELIEKNVVAVIGPQSSGIGHVISHVVNELHV 475 AL+L+E VVA IGPQSSGIGH+ISHV NELHV Sbjct: 105 ALQLMENKVVAAIGPQSSGIGHIISHVANELHV 137
>GLR34_ARATH (Q8GXJ4) Glutamate receptor 3.4 precursor (Ligand-gated ion channel| 3.4) (AtGLR4) Length = 959 Score = 132 bits (332), Expect = 5e-31 Identities = 64/94 (68%), Positives = 80/94 (85%) Frame = +2 Query: 194 RPSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTI 373 RPS V VGALFTYDS IGRAA+ A++ A+DDVNAD++VL G +L++I QD+NCSGF+GT+ Sbjct: 57 RPSSVNVGALFTYDSFIGRAAKPAVKAAMDDVNADQSVLKGIKLNIIFQDSNCSGFIGTM 116 Query: 374 EALELIEKNVVAVIGPQSSGIGHVISHVVNELHV 475 AL+L+E VVA IGPQSSGI H+IS+V NELHV Sbjct: 117 GALQLMENKVVAAIGPQSSGIAHMISYVANELHV 150
>GLR33_ARATH (Q9C8E7) Glutamate receptor 3.3 precursor (Ligand-gated ion channel| 3.3) Length = 933 Score = 108 bits (270), Expect = 7e-24 Identities = 47/94 (50%), Positives = 74/94 (78%) Frame = +2 Query: 194 RPSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTI 373 +P V +G++F++DSVIG+ A++AI+ AV DVN++ +L+GT+ S+ Q++NCSGF+G + Sbjct: 25 KPKVVKIGSIFSFDSVIGKVAKIAIDEAVKDVNSNPDILSGTKFSVSMQNSNCSGFMGMV 84 Query: 374 EALELIEKNVVAVIGPQSSGIGHVISHVVNELHV 475 EAL +EK++V +IGPQ S + H+ISH+ NEL V Sbjct: 85 EALRFMEKDIVGIIGPQCSVVAHMISHMANELRV 118
>GLR37_ARATH (Q9SDQ4) Glutamate receptor 3.7 precursor (Ligand-gated ion channel| 3.7) (Ionotropic glutamate receptor GLR5) Length = 921 Score = 97.4 bits (241), Expect = 2e-20 Identities = 48/93 (51%), Positives = 65/93 (69%) Frame = +2 Query: 194 RPSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTI 373 RP V +GA+F +DSVIGRAA++A+E AV DVN D++ L T L L+ +D+ C+ F G+ Sbjct: 27 RPQLVNIGAVFAFDSVIGRAAKVALEAAVSDVNNDKSFLKETELRLLMEDSACNVFRGSF 86 Query: 374 EALELIEKNVVAVIGPQSSGIGHVISHVVNELH 472 A EL+EK VVA+IGP SS + H IS + LH Sbjct: 87 GAFELLEKEVVAMIGPISSSVAHTISDIAKGLH 119
>GLR36_ARATH (Q84W41) Glutamate receptor 3.6 precursor (Ligand-gated ion channel| 3.6) Length = 903 Score = 85.5 bits (210), Expect = 6e-17 Identities = 39/94 (41%), Positives = 63/94 (67%) Frame = +2 Query: 194 RPSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTI 373 RP V +G++FT++S+IG+ ++A++ AV+DVNA ++L T L +I DT +GF+ + Sbjct: 26 RPQVVNIGSVFTFNSLIGKVIKVAMDAAVEDVNASPSILNTTTLRIIMHDTKYNGFMSIM 85 Query: 374 EALELIEKNVVAVIGPQSSGIGHVISHVVNELHV 475 E L+ +E VA+IGPQ S V++HV EL + Sbjct: 86 EPLQFMESETVAIIGPQRSTTARVVAHVATELKI 119
>GLR31_ARATH (Q7XJL2) Glutamate receptor 3.1 precursor (Ligand-gated ion channel| 3.1) (AtGLR2) Length = 921 Score = 85.1 bits (209), Expect = 8e-17 Identities = 40/94 (42%), Positives = 64/94 (68%) Frame = +2 Query: 194 RPSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTI 373 RP + VGA+F +++ G A +A + A +DVN+D + L G++L ++ D SGF+ + Sbjct: 26 RPPVIKVGAIFGLNTMYGETANIAFKAAEEDVNSDPSFLGGSKLRILMNDAKRSGFLSIM 85 Query: 374 EALELIEKNVVAVIGPQSSGIGHVISHVVNELHV 475 AL+ +E +VVA+IGPQ+S + HV+SH+ NEL V Sbjct: 86 GALQFMETDVVAIIGPQTSIMAHVLSHLANELTV 119
>GLR32_ARATH (Q93YT1) Glutamate receptor 3.2 precursor (Ligand-gated ion channel| 3.2) (AtGluR2) Length = 912 Score = 80.5 bits (197), Expect = 2e-15 Identities = 39/96 (40%), Positives = 63/96 (65%) Frame = +2 Query: 188 GPRPSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVG 367 G RP V VGA+F+ ++ G +A++ A +DVN+D + L G++L + D +GF+ Sbjct: 24 GLRPRYVDVGAIFSLGTLQGEVTNIAMKAAEEDVNSDPSFLGGSKLRITTYDAKRNGFLT 83 Query: 368 TIEALELIEKNVVAVIGPQSSGIGHVISHVVNELHV 475 + AL+ +E + VA+IGPQ+S + HV+SH+ NEL V Sbjct: 84 IMGALQFMETDAVAIIGPQTSIMAHVLSHLANELSV 119
>GABR1_RAT (Q9Z0U4) Gamma-aminobutyric acid type B receptor, subunit 1| precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1) Length = 991 Score = 39.3 bits (90), Expect = 0.005 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Frame = +2 Query: 206 VAVGALFTYDSVI--GRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEA 379 V +GALF G+A + A+E+A++DVN+ R +L L LI D+ C T Sbjct: 169 VYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYL 228 Query: 380 LELIEKNVVAVI 415 EL+ + + +I Sbjct: 229 YELLYNDPIKII 240
>GABR1_HUMAN (Q9UBS5) Gamma-aminobutyric acid type B receptor, subunit 1| precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1) Length = 961 Score = 39.3 bits (90), Expect = 0.005 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Frame = +2 Query: 206 VAVGALFTYDSVI--GRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEA 379 V +GALF G+A + A+E+A++DVN+ R +L L LI D+ C T Sbjct: 170 VYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYL 229 Query: 380 LELIEKNVVAVI 415 EL+ + + +I Sbjct: 230 YELLYNDPIKII 241
>GABR1_MOUSE (Q9WV18) Gamma-aminobutyric acid type B receptor, subunit 1| precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1) Length = 960 Score = 39.3 bits (90), Expect = 0.005 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Frame = +2 Query: 206 VAVGALFTYDSVI--GRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEA 379 V +GALF G+A + A+E+A++DVN+ R +L L LI D+ C T Sbjct: 169 VYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYL 228 Query: 380 LELIEKNVVAVI 415 EL+ + + +I Sbjct: 229 YELLYNDPIKII 240
>GRIK3_RAT (P42264) Glutamate receptor, ionotropic kainate 3 precursor| (Glutamate receptor 7) (GluR-7) (GluR7) Length = 919 Score = 37.4 bits (85), Expect = 0.020 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Frame = +2 Query: 197 PSEVAVGALFTY----DSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNC-SGF 361 P + +G +F Y ++ + A A + + +N +RT+L T L+ Q + F Sbjct: 33 PHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSF 92 Query: 362 VGTIEALELIEKNVVAVIGPQSSGIGHVISHVVNELHV 475 T +A + + VVA+ GP + + + N L V Sbjct: 93 EATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEV 130
>GRIK3_HUMAN (Q13003) Glutamate receptor, ionotropic kainate 3 precursor| (Glutamate receptor 7) (GluR-7) (GluR7) (Excitatory amino acid receptor 5) (EAA5) Length = 919 Score = 37.4 bits (85), Expect = 0.020 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Frame = +2 Query: 197 PSEVAVGALFTY----DSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNC-SGF 361 P + +G +F Y ++ + A A + + +N +RT+L T L+ Q + F Sbjct: 33 PHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSF 92 Query: 362 VGTIEALELIEKNVVAVIGPQSSGIGHVISHVVNELHV 475 T +A + + VVA+ GP + + + N L V Sbjct: 93 EATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEV 130
>KAS2_STRVN (P16541) Granaticin polyketide putative beta-ketoacyl synthase 2| (EC 2.3.1.-) (ORF2) Length = 415 Score = 32.0 bits (71), Expect = 0.83 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -1 Query: 370 GP-DEAAAVGVLRDEAEPGAGEHRAVRVDVVDGELDGEPRRAA 245 GP D AAA+ LRD+ P G HRAV + G PR AA Sbjct: 342 GPADLAAALLALRDQVIPATGRHRAVPDAYALDLVTGRPREAA 384
>GRIK4_RAT (Q01812) Glutamate receptor, ionotropic kainate 4 precursor| (Glutamate receptor KA-1) (KA1) Length = 956 Score = 31.6 bits (70), Expect = 1.1 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Frame = +2 Query: 197 PSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIE 376 P + + A+ R RL+I LA + +N L ++ + + T E Sbjct: 22 PHSLRIAAILDDPMECSRGERLSITLAKNRINRAPERLGKAKVEVDIFELLRDSEYETAE 81 Query: 377 AL-ELIEKNVVAVIGPQSS-GIGHVISHVVNELHV 475 + +++ K VVAV+GP SS +IS++ E V Sbjct: 82 TMCQILPKGVVAVLGPSSSPASSSIISNICGEKEV 116
>GRIK4_PANTR (Q5IS46) Glutamate receptor, ionotropic kainate 4 precursor| Length = 956 Score = 31.6 bits (70), Expect = 1.1 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Frame = +2 Query: 197 PSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIE 376 P + + A+ R RL+I LA + +N L ++ + + T E Sbjct: 22 PHSLRIAAILDDPMECSRGERLSITLAKNRINRAPERLGKAKVEVDIFELLRDSEYETAE 81 Query: 377 AL-ELIEKNVVAVIGPQSS-GIGHVISHVVNELHV 475 + +++ K VVAV+GP SS +IS++ E V Sbjct: 82 TMCQILPKGVVAVLGPSSSPASSSIISNICGEKEV 116
>GRIK4_MOUSE (Q8BMF5) Glutamate receptor, ionotropic kainate 4 precursor| Length = 956 Score = 31.6 bits (70), Expect = 1.1 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Frame = +2 Query: 197 PSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIE 376 P + + A+ R RL+I LA + +N L ++ + + T E Sbjct: 22 PHSLRIAAILDDPMECSRGERLSITLAKNRINRAPERLGKAKVEVDIFELLRDSEYETAE 81 Query: 377 AL-ELIEKNVVAVIGPQSS-GIGHVISHVVNELHV 475 + +++ K VVAV+GP SS +IS++ E V Sbjct: 82 TMCQILPKGVVAVLGPSSSPASSSIISNICGEKEV 116
>GRIK4_HUMAN (Q16099) Glutamate receptor, ionotropic kainate 4 precursor| (Glutamate receptor KA-1) (KA1) (Excitatory amino acid receptor 1) (EAA1) Length = 956 Score = 31.6 bits (70), Expect = 1.1 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Frame = +2 Query: 197 PSEVAVGALFTYDSVIGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIE 376 P + + A+ R RL+I LA + +N L ++ + + T E Sbjct: 22 PHSLRIAAILDDPMECSRGERLSITLAKNRINRAPERLGKAKVEVDIFELLRDSEYETAE 81 Query: 377 AL-ELIEKNVVAVIGPQSS-GIGHVISHVVNELHV 475 + +++ K VVAV+GP SS +IS++ E V Sbjct: 82 TMCQILPKGVVAVLGPSSSPASSSIISNICGEKEV 116
>GUC2D_RAT (P51839) Olfactory guanylyl cyclase GC-D precursor (EC 4.6.1.2)| (Guanylate cyclase, olfactory) Length = 1110 Score = 30.8 bits (68), Expect = 1.9 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = +2 Query: 260 LAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEALELI---EKNVVAVIGPQSS 430 +A +LAVD VN D ++L G++L T C T AL V A IGP + Sbjct: 91 MATQLAVDRVNQDASLLLGSQLDFKILPTGCD----TPHALATFVAHRNTVAAFIGPVNP 146 Query: 431 G 433 G Sbjct: 147 G 147
>SPAG1_MOUSE (Q80ZX8) Sperm-associated antigen 1 (Infertility-related sperm| protein Spag-1) (TPR-containing protein involved in spermatogenesis) (TPIS) Length = 901 Score = 30.0 bits (66), Expect = 3.2 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Frame = -1 Query: 373 DGPDEAAAVGVLRDEAEPGAG-EHRAVRVDVVDGELDGEPRRAA 245 D + A + D A P G E R ++V VDG D EP R A Sbjct: 705 DSSEAARHLDTKNDTAPPSKGRERRRIQVQEVDGSSDEEPERPA 748
>ADEC1_HUMAN (O15204) ADAM DEC1 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain-like protein decysin 1) (ADAM-like protein decysin 1) Length = 470 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = +2 Query: 320 RLSLIAQDTNCSGFVGTIEALELIEKNVVAVIGPQSSGIGHVI 448 R+ L A ++ CS ++ +E +KN VA++G S +GHV+ Sbjct: 318 RVGLAASNSLCSP--SSVAVIEAKKKNNVALVGVMSHELGHVL 358
>GCY_STRPU (P16065) Speract receptor precursor (Guanylate cyclase) (EC| 4.6.1.2) Length = 1125 Score = 29.3 bits (64), Expect = 5.4 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = +2 Query: 242 IGRAARLAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEALELIEKNVVAVIGP 421 +G A A+ LA+ N D +L G + DT+C +G + ++ V VIGP Sbjct: 57 LGFPALGALPLAISLANQDSNILNGFDVQFEWVDTHCDINIGMHAVSDWWKRGFVGVIGP 116
>TS1R3_PANTR (Q717C2) Taste receptor type 1 member 3 precursor (Sweet taste| receptor T1R3) Length = 852 Score = 28.5 bits (62), Expect = 9.2 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 17/79 (21%) Frame = +2 Query: 260 LAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEALELIEK-------------- 397 LA+++AV+++N +L G RL DT V +L + K Sbjct: 74 LAMKMAVEEINNKSDLLPGLRLGYDLFDTCSEPVVAMKPSLVFLAKAGSRDIAAYCNYTQ 133 Query: 398 ---NVVAVIGPQSSGIGHV 445 V+AVIGP SS + V Sbjct: 134 YQPRVLAVIGPHSSELAMV 152
>TS1R3_HUMAN (Q7RTX0) Taste receptor type 1 member 3 precursor (Sweet taste| receptor T1R3) Length = 852 Score = 28.5 bits (62), Expect = 9.2 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 17/79 (21%) Frame = +2 Query: 260 LAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEALELIEK-------------- 397 LA+++AV+++N +L G RL DT V +L + K Sbjct: 74 LAMKMAVEEINNKSDLLPGLRLGYDLFDTCSEPVVAMKPSLMFLAKAGSRDIAAYCNYTQ 133 Query: 398 ---NVVAVIGPQSSGIGHV 445 V+AVIGP SS + V Sbjct: 134 YQPRVLAVIGPHSSELAMV 152
>TS1R3_GORGO (Q717C1) Taste receptor type 1 member 3 precursor (Sweet taste| receptor T1R3) Length = 852 Score = 28.5 bits (62), Expect = 9.2 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 17/79 (21%) Frame = +2 Query: 260 LAIELAVDDVNADRTVLAGTRLSLIAQDTNCSGFVGTIEALELIEK-------------- 397 LA+++AV+++N +L G RL DT V +L + K Sbjct: 74 LAMKMAVEEINNKSDLLPGLRLGYDLFDTCSEPVVAMKPSLMFLAKAGSRDIAAYCNYTQ 133 Query: 398 ---NVVAVIGPQSSGIGHV 445 V+AVIGP SS + V Sbjct: 134 YQPRVLAVIGPHSSELAMV 152 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,900,044 Number of Sequences: 219361 Number of extensions: 770384 Number of successful extensions: 2819 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2755 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2819 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
