ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29d08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 178 ggcgggggccgggccgcgtccgagcgaggtcgccgtgggcgcgctcttcacctacgactc 237 ||||||||| ||| ||| ||||||||||| | | |||||||||| |||||||||||| Sbjct: 27962064 ggcgggggcgggggagcggccgagcgaggtgtcaatcggcgcgctctacacctacgactc 27962123 Query: 238 cgtcattggccgcgcggcgcggctcgccatcgagctcgccgtcgacgacgtcaacgcgga 297 || ||||| ||||||||| |||||||||||||||||||||||| |||||||||||| || Sbjct: 27962124 ggtgattgggcgcgcggcggggctcgccatcgagctcgccgtcggcgacgtcaacgccga 27962183 Query: 298 ccgcacggtgctcgccggcacccggctcagcctcatcgcgcaggacaccaactgcagcgg 357 ||| || ||||| ||||| ||| ||||||||||||| | |||||||||||||||||||| Sbjct: 27962184 ccggaccgtgctggccgggaccacgctcagcctcatctcccaggacaccaactgcagcgg 27962243 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 376 agcattggagctaatagagaaaaatgtagttgctgttattggcccacagtcatctggtat 435 ||||||| || |||| |||||||| || |||||||| ||||| ||||| || ||||| || Sbjct: 27963733 agcattgcagttaatggagaaaaacgtggttgctgtcattggtccacaatcctctggaat 27963792 Query: 436 aggccatgtcatctcccatgttgttaacgagctacatgtt 475 ||||||||| || || ||||||||||| |||||||||||| Sbjct: 27963793 aggccatgttatttcacatgttgttaatgagctacatgtt 27963832 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 ccatcgagctcgccgtcgacgacg 287 |||||||| ||||||||||||||| Sbjct: 1413845 ccatcgagttcgccgtcgacgacg 1413822
>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0547F09 Length = 140615 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 178 ggcgggggccgggccgcgtccgagcgaggtcgccgtgggcgcgctcttcacctacgactc 237 ||||||||| ||| ||| ||||||||||| | | |||||||||| |||||||||||| Sbjct: 6883 ggcgggggcgggggagcggccgagcgaggtgtcaatcggcgcgctctacacctacgactc 6942 Query: 238 cgtcattggccgcgcggcgcggctcgccatcgagctcgccgtcgacgacgtcaacgcgga 297 || ||||| ||||||||| |||||||||||||||||||||||| |||||||||||| || Sbjct: 6943 ggtgattgggcgcgcggcggggctcgccatcgagctcgccgtcggcgacgtcaacgccga 7002 Query: 298 ccgcacggtgctcgccggcacccggctcagcctcatcgcgcaggacaccaactgcagcgg 357 ||| || ||||| ||||| ||| ||||||||||||| | |||||||||||||||||||| Sbjct: 7003 ccggaccgtgctggccgggaccacgctcagcctcatctcccaggacaccaactgcagcgg 7062 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 376 agcattggagctaatagagaaaaatgtagttgctgttattggcccacagtcatctggtat 435 ||||||| || |||| |||||||| || |||||||| ||||| ||||| || ||||| || Sbjct: 8552 agcattgcagttaatggagaaaaacgtggttgctgtcattggtccacaatcctctggaat 8611 Query: 436 aggccatgtcatctcccatgttgttaacgagctacatgtt 475 ||||||||| || || ||||||||||| |||||||||||| Sbjct: 8612 aggccatgttatttcacatgttgttaatgagctacatgtt 8651
>dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0003H08 Length = 142068 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 178 ggcgggggccgggccgcgtccgagcgaggtcgccgtgggcgcgctcttcacctacgactc 237 ||||||||| ||| ||| ||||||||||| | | |||||||||| |||||||||||| Sbjct: 115987 ggcgggggcgggggagcggccgagcgaggtgtcaatcggcgcgctctacacctacgactc 116046 Query: 238 cgtcattggccgcgcggcgcggctcgccatcgagctcgccgtcgacgacgtcaacgcgga 297 || ||||| ||||||||| |||||||||||||||||||||||| |||||||||||| || Sbjct: 116047 ggtgattgggcgcgcggcggggctcgccatcgagctcgccgtcggcgacgtcaacgccga 116106 Query: 298 ccgcacggtgctcgccggcacccggctcagcctcatcgcgcaggacaccaactgcagcgg 357 ||| || ||||| ||||| ||| ||||||||||||| | |||||||||||||||||||| Sbjct: 116107 ccggaccgtgctggccgggaccacgctcagcctcatctcccaggacaccaactgcagcgg 116166 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 376 agcattggagctaatagagaaaaatgtagttgctgttattggcccacagtcatctggtat 435 ||||||| || |||| |||||||| || |||||||| ||||| ||||| || ||||| || Sbjct: 117656 agcattgcagttaatggagaaaaacgtggttgctgtcattggtccacaatcctctggaat 117715 Query: 436 aggccatgtcatctcccatgttgttaacgagctacatgtt 475 ||||||||| || || ||||||||||| |||||||||||| Sbjct: 117716 aggccatgttatttcacatgttgttaatgagctacatgtt 117755
>dbj|AK099745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091J21, full insert sequence Length = 3189 Score = 155 bits (78), Expect = 2e-34 Identities = 168/198 (84%) Strand = Plus / Plus Query: 278 gtcgacgacgtcaacgcggaccgcacggtgctcgccggcacccggctcagcctcatcgcg 337 |||| |||||||||||| ||||| || ||||| ||||| ||| ||||||||||||| | Sbjct: 292 gtcggcgacgtcaacgccgaccggaccgtgctggccgggaccacgctcagcctcatctcc 351 Query: 338 caggacaccaactgcagcggcttcgtcgggaccatcgaagcattggagctaatagagaaa 397 |||||||||||||||||||| || | || || |||||||||||| || |||| |||||| Sbjct: 352 caggacaccaactgcagcgggtttcttggaacaatcgaagcattgcagttaatggagaaa 411 Query: 398 aatgtagttgctgttattggcccacagtcatctggtataggccatgtcatctcccatgtt 457 || || |||||||| ||||| ||||| || ||||| ||||||||||| || || |||||| Sbjct: 412 aacgtggttgctgtcattggtccacaatcctctggaataggccatgttatttcacatgtt 471 Query: 458 gttaacgagctacatgtt 475 ||||| |||||||||||| Sbjct: 472 gttaatgagctacatgtt 489
>ref|NM_194213.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2868 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 215 ggcgcgctcttcacctacgactccgtcattggccgcgcggcgcggctcgccatcgagctc 274 |||||||||||||||| |||||||||||| || | ||||| | ||||||||||||| Sbjct: 100 ggcgcgctcttcaccttcgactccgtcatcgggagggcggccaaggtcgccatcgagctg 159 Query: 275 gccgtcgacgacgt 288 ||||||| |||||| Sbjct: 160 gccgtcgccgacgt 173
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 215 ggcgcgctcttcacctacgactccgtcattggccgcgcggcgcggctcgccatcgagctc 274 |||||||||||||||| |||||||||||| || | ||||| | ||||||||||||| Sbjct: 190667 ggcgcgctcttcaccttcgactccgtcatcgggagggcggccaaggtcgccatcgagctg 190726 Query: 275 gccgtcgacgacgt 288 ||||||| |||||| Sbjct: 190727 gccgtcgccgacgt 190740 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 tcgccgtgggcgcgctcttc 226 |||||||||||||||||||| Sbjct: 22300726 tcgccgtgggcgcgctcttc 22300707
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 215 ggcgcgctcttcacctacgactccgtcattggccgcgcggcgcggctcgccatcgagctc 274 |||||||||||||||| |||||||||||| || | ||||| | ||||||||||||| Sbjct: 25531 ggcgcgctcttcaccttcgactccgtcatcgggagggcggccaaggtcgccatcgagctg 25590 Query: 275 gccgtcgacgacgt 288 ||||||| |||||| Sbjct: 25591 gccgtcgccgacgt 25604
>dbj|AK122009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111F13, full insert sequence Length = 3648 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 215 ggcgcgctcttcacctacgactccgtcattggccgcgcggcgcggctcgccatcgagctc 274 |||||||||||||||| |||||||||||| || | ||||| | ||||||||||||| Sbjct: 616 ggcgcgctcttcaccttcgactccgtcatcgggagggcggccaaggtcgccatcgagctg 675 Query: 275 gccgtcgacgacgt 288 ||||||| |||||| Sbjct: 676 gccgtcgccgacgt 689
>dbj|AB218878.1| Streptomyces griseus genes for AraC-type transcriptional regulator, ABC-transport system, substrate-binding extracellular domain, ABC-transport system, membrane integral subunit, ABC-transport system, membrane integral subunit, ABC-transport system, ATP-binding protein, Cytochrome P-450, type III polyketide synthase, subtilisine-like serine protease, chitinase, partial and complete cds Length = 12095 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 309 tcgccggcacccggctcagcctcatcg 335 |||||||||||||||||| |||||||| Sbjct: 3067 tcgccggcacccggctcatcctcatcg 3093
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 155 gccgcggcgagggcggtcaccgc 177 ||||||||||||||||||||||| Sbjct: 4139603 gccgcggcgagggcggtcaccgc 4139625
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 310 cgccggcacccggctcagcctc 331 |||||||||||||||||||||| Sbjct: 64881 cgccggcacccggctcagcctc 64860
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 310 cgccggcacccggctcagcctc 331 |||||||||||||||||||||| Sbjct: 1388 cgccggcacccggctcagcctc 1367
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 310 cgccggcacccggctcagcctc 331 |||||||||||||||||||||| Sbjct: 65045 cgccggcacccggctcagcctc 65024
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 152 gccgccgcggcgagggcggtcaccgc 177 ||||||||||||||| |||||||||| Sbjct: 1005387 gccgccgcggcgaggtcggtcaccgc 1005412
>emb|BX000363.21| Zebrafish DNA sequence from clone CH211-10K11 in linkage group 5, complete sequence Length = 174403 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 395 aaaaatgtagttgctgttattg 416 |||||||||||||||||||||| Sbjct: 35572 aaaaatgtagttgctgttattg 35551
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01, complete sequence Length = 146303 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 gcggcgggggccgggccgcgt 196 ||||||||||||||||||||| Sbjct: 4951 gcggcgggggccgggccgcgt 4971
>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21, complete sequence Length = 151267 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 gcggcgggggccgggccgcgt 196 ||||||||||||||||||||| Sbjct: 122773 gcggcgggggccgggccgcgt 122793
>gb|BT009448.1| Triticum aestivum clone wlmk8.pk0018.e8:fis, full insert mRNA sequence Length = 1560 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 259 gctcgccatcgagctcgccgtcgacgacg 287 |||| |||||| ||||||||||||||||| Sbjct: 60 gctccccatcgtgctcgccgtcgacgacg 88
>gb|AY069953.1| Hordeum vulgare APETALA2-like protein (AP2L1) mRNA, complete cds Length = 1815 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 185 gccgggccgcgtccgagcgaggtcg 209 |||| |||||||||||||||||||| Sbjct: 180 gccgtgccgcgtccgagcgaggtcg 156
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 ctcgccgtcgacgacgtcaac 292 ||||||||||||||||||||| Sbjct: 15467183 ctcgccgtcgacgacgtcaac 15467163
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 gcggcgggggccgggccgcgt 196 ||||||||||||||||||||| Sbjct: 19200875 gcggcgggggccgggccgcgt 19200895 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 cgccgccgcggcgagggcgg 170 |||||||||||||||||||| Sbjct: 683414 cgccgccgcggcgagggcgg 683395
>gb|AF166333.1|AF166333 Myxococcus xanthus histidine protein kinase AsgD (asgD) gene, complete cds Length = 3080 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 caccgcggcgggggccgggccgcgt 196 |||||||||||| |||||||||||| Sbjct: 3007 caccgcggcgggtgccgggccgcgt 3031
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 gcgaggtcgccgtgggcgcgc 221 ||||||||||||||||||||| Sbjct: 3212913 gcgaggtcgccgtgggcgcgc 3212893
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 ctcgccgtcgacgacgtcaac 292 ||||||||||||||||||||| Sbjct: 15421466 ctcgccgtcgacgacgtcaac 15421446
>emb|AL713911.3|CNS07YQC Oryza sativa chromosome 12, . BAC OSJNBb0066P16 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126680 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 ctcgccgtcgacgacgtcaac 292 ||||||||||||||||||||| Sbjct: 35304 ctcgccgtcgacgacgtcaac 35324
>ref|XM_478702.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1593 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 tcgccgtgggcgcgctcttc 226 |||||||||||||||||||| Sbjct: 650 tcgccgtgggcgcgctcttc 669
>ref|XM_475078.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2535 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 cgccgccgcggcgagggcgg 170 |||||||||||||||||||| Sbjct: 1615 cgccgccgcggcgagggcgg 1596
>ref|XM_473186.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1407 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 cgccgccgcggcgagggcgg 170 |||||||||||||||||||| Sbjct: 63 cgccgccgcggcgagggcgg 44
>gb|AY540995.1| Achromobacter xylosoxidans subsp. denitrificans strain EST4002 plasmid pEST4011, complete sequence Length = 76958 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ccgcgcggcgcggctcgcca 266 |||||||||||||||||||| Sbjct: 45177 ccgcgcggcgcggctcgcca 45196
>gb|AY331258.1| Sphingomonas paucimobilis ORFA (orfA), ORFB (orfB), ORFC (orfC), ORFD (orfD), ORFE (orfE), ORFF (orfF), ORFG (orfG), ORFH (orfH), LinX1 (linX1), LinX2 (linX2), and LinA (linA) genes, complete cds; insertion sequence IS6100A, complete sequence; ORFJ' (orfJ') and ORFK (orfK) genes, complete cds; insertion sequence IS6100B, complete sequence; LinC (linC) gene, complete cds; insertion sequence IS6100C, complete sequence; and 'ORFN ('orfN), ORFO (orfO), ORFP (orfP), ORFQ (orfQ), ORFR (orfR), ORFS (orfS), ORFT (orfT), ORFU (orfU), ORFV (orfV), ORFW (orfW), ORFX (orfX), and ORFY (orfY) genes, complete cds Length = 41034 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ccttgctcgccgccgcggcg 163 |||||||||||||||||||| Sbjct: 2802 ccttgctcgccgccgcggcg 2783
>gb|BC036819.1| Homo sapiens tubulin tyrosine ligase, mRNA (cDNA clone MGC:46235 IMAGE:5767758), complete cds Length = 2070 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gcggcgggggccgggccgcg 195 |||||||||||||||||||| Sbjct: 78 gcggcgggggccgggccgcg 97
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 cctcatcgcgcaggacacca 347 |||||||||||||||||||| Sbjct: 1585916 cctcatcgcgcaggacacca 1585897
>gb|AF029344.2| Burkholderia cepacia putative transcription factor, malonate decarboxylase epsilon-subunit (mdcH), MdcB (mdcB), MdcG (mdcG), malonate decarboxylase gamma-subunit (mdcE), malonate decarboxylase beta-subunit (mdcD), malonate decarboxylase delta-subunit (mdcC), malonate decarboxylase alpha-subunit (mdcA), proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase bifunctional protein (putA), leucine-responsive regulatory protein (lrp), chloride-channel protein, chloromuconate cycloisomerase (tfdD), indole acetamide hydrolase (iaaH), LysR-type transcription factor (tfdR), chlorocatechol 1,2-dioxygenase (tfdC), dienelactone hydrolase (tfdE), 2,4-dichlorophenol hydroxylase (tfdB), putative transport protein (tfdK), 2,4-D/alpha-ketoglutarate dioxygenase (tfdA), maleylacetate reductase (tfdF), and putative transposase genes, complete cds; and unknown genes Length = 36642 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ccgcgcggcgcggctcgcca 266 |||||||||||||||||||| Sbjct: 9967 ccgcgcggcgcggctcgcca 9948
>gb|AY342322.1| Oryza sativa (japonica cultivar-group) monosaccharide transporter 6 (MST6) mRNA, complete cds Length = 1590 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 tcgccgtgggcgcgctcttc 226 |||||||||||||||||||| Sbjct: 650 tcgccgtgggcgcgctcttc 669
>emb|AL359076.16| Human DNA sequence from clone RP11-264I13 on chromosome 9 Contains the 5' end of the SMARCA2 gene for SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily a member 2 (SNF2LA), a novel gene and two CpG islands, complete sequence Length = 138859 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gcggcgggggccgggccgcg 195 |||||||||||||||||||| Sbjct: 10098 gcggcgggggccgggccgcg 10117
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 caacgcggaccgcacggtgc 308 |||||||||||||||||||| Sbjct: 125334 caacgcggaccgcacggtgc 125315
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 278 gtcgacgacgtcaacgcggaccgcacggtgctcgcc 313 ||||||||||||| ||| |||||||||||| |||| Sbjct: 43447 gtcgacgacgtcaccgcctaccgcacggtgcgcgcc 43412
>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02, complete sequence Length = 139080 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 cgccgccgcggcgagggcgg 170 |||||||||||||||||||| Sbjct: 51273 cgccgccgcggcgagggcgg 51254
>gb|AC062004.5| Homo sapiens chromosome 8, clone RP11-325O20, complete sequence Length = 205646 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 cacccacgctgctgtgctgtggcg 49 |||||| ||||||||||||||||| Sbjct: 42468 cacccaggctgctgtgctgtggcg 42491
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 cgccgccgcggcgagggcgg 170 |||||||||||||||||||| Sbjct: 3307734 cgccgccgcggcgagggcgg 3307715
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 cgccgccgcggcgagggcgg 170 |||||||||||||||||||| Sbjct: 25833863 cgccgccgcggcgagggcgg 25833844
>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence Length = 90348 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 gctcgccatcgagctcgccg 278 |||||||||||||||||||| Sbjct: 19369 gctcgccatcgagctcgccg 19388
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gcggcgggggccgggccgcg 195 |||||||||||||||||||| Sbjct: 2533868 gcggcgggggccgggccgcg 2533887 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 gctcgccggcacccggctca 326 |||||||||||||||||||| Sbjct: 1261777 gctcgccggcacccggctca 1261796
>gb|AC012442.7| Homo sapiens BAC clone RP11-1I24 from 2, complete sequence Length = 173040 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gcggcgggggccgggccgcg 195 |||||||||||||||||||| Sbjct: 35663 gcggcgggggccgggccgcg 35682
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 tcgccgtgggcgcgctcttc 226 |||||||||||||||||||| Sbjct: 105972 tcgccgtgggcgcgctcttc 105953
>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22 Length = 101666 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 ccatcgagctcgccgtcgacgacg 287 |||||||| ||||||||||||||| Sbjct: 21131 ccatcgagttcgccgtcgacgacg 21108
>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0425F02 Length = 176979 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 ccatcgagctcgccgtcgacgacg 287 |||||||| ||||||||||||||| Sbjct: 122384 ccatcgagttcgccgtcgacgacg 122361
>dbj|AK106443.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D12, full insert sequence Length = 2781 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 cgccgccgcggcgagggcgg 170 |||||||||||||||||||| Sbjct: 1730 cgccgccgcggcgagggcgg 1711
>emb|BX120008.9| Zebrafish DNA sequence from clone CH211-215G18 in linkage group 14, complete sequence Length = 221928 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 gggccgggccgcgtccgagc 202 |||||||||||||||||||| Sbjct: 86032 gggccgggccgcgtccgagc 86051
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 254 gcgcggctcgccatcgagctcgccgtcg 281 ||||||||||| ||||||| |||||||| Sbjct: 875512 gcgcggctcgcgatcgagcccgccgtcg 875485
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gccatcgagctcgccgtcga 282 |||||||||||||||||||| Sbjct: 779930 gccatcgagctcgccgtcga 779911
>gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, complete sequence Length = 99448 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ccgcgcggcgcggctcgcca 266 |||||||||||||||||||| Sbjct: 70954 ccgcgcggcgcggctcgcca 70935
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0041A22, complete sequence Length = 117919 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 cgccgccgcggcgagggcgg 170 |||||||||||||||||||| Sbjct: 28613 cgccgccgcggcgagggcgg 28594 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,085,416 Number of Sequences: 3902068 Number of extensions: 3085416 Number of successful extensions: 73597 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71005 Number of HSP's gapped (non-prelim): 2585 length of query: 475 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 453 effective length of database: 17,147,199,772 effective search space: 7767681496716 effective search space used: 7767681496716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
