ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2 32 1.2
2FTSK_HAEIN (P45264) DNA translocase ftsK 29 7.6

>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2|
          Length = 1514

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 210 ARTACSPPMMTSTAAIARFPFSPTAPPAPRTRLS 311
           A T+CSPP    TAA +  P+S T PP  R   S
Sbjct: 792 ASTSCSPPPEQGTAADSVSPWSHTCPPTVRPATS 825



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>FTSK_HAEIN (P45264) DNA translocase ftsK|
          Length = 529

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 155 LSLTASFQISTGYFSDSGGADSLFAADDDLYGSYRSFSLF-PHGASRTTDE 304
           ++ T + +I +    D GGA++L    D LY    S  L   HGA  + DE
Sbjct: 376 IAFTVASKIDSRTILDQGGAEALLGRGDMLYSGQGSSDLIRVHGAYMSDDE 426


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,351,472
Number of Sequences: 219361
Number of extensions: 527880
Number of successful extensions: 2015
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2015
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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