ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29d07 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL589766.17| Mouse DNA sequence from clone RP23-19G4 on chromosome 13 contains the Vmp gene for vesicular membrane protein P24, complete sequence Length = 176183 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Minus Query: 22 gaatcccaacctgtgcactcacca 45 |||||||||||||||||||||||| Sbjct: 68637 gaatcccaacctgtgcactcacca 68614
>dbj|AP003603.1| Nostoc sp. PCC 7120 plasmid pCC7120gamma DNA, complete sequence Length = 101965 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 101 gtttgccccaagctcgcgcacgct 124 |||||||||||||||||||||||| Sbjct: 68649 gtttgccccaagctcgcgcacgct 68672
>emb|AL161436.12| Human DNA sequence from clone RP11-377N20 on chromosome 6 Contains part of a novel gene, complete sequence Length = 124814 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 318 tcaccgccaccctcaccctcacc 340 ||||||||||||||||||||||| Sbjct: 11935 tcaccgccaccctcaccctcacc 11913
>gb|AC134402.9| Mus musculus chromosome 5, clone RP24-301D19, complete sequence Length = 199834 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 316 cctcaccgccaccctcaccctcacc 340 ||||||| ||||||||||||||||| Sbjct: 4162 cctcacccccaccctcaccctcacc 4138
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 ttcgccgccgatgatgacctc 244 ||||||||||||||||||||| Sbjct: 1727471 ttcgccgccgatgatgacctc 1727451
>gb|AC159996.7| Mus musculus chromosome 5, clone RP23-46J11, complete sequence Length = 208036 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 316 cctcaccgccaccctcaccctcacc 340 ||||||| ||||||||||||||||| Sbjct: 143372 cctcacccccaccctcaccctcacc 143348
>emb|AL157938.22| Human DNA sequence from clone RP11-544A12 on chromosome 9q34.13-34.3 Contains the 3' end of the LAMC3 gene for laminin gamma 3, the gene for ionized calcium binding adaptor (IBA2), the NUP214 gene for nucleoporin 214kDa, a novel gene, a ribosomal protein L13a (RPL13A) pseudogene, the gene for a novel protein (FLJ00024) and four CpG islands, complete sequence Length = 197019 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 cctcaccgccaccctcaccct 336 ||||||||||||||||||||| Sbjct: 8405 cctcaccgccaccctcaccct 8425
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 cacctcaccgccaccctcacc 334 ||||||||||||||||||||| Sbjct: 5344249 cacctcaccgccaccctcacc 5344229
>gb|AC020922.9| Homo sapiens chromosome 19 clone CTD-2105E13, complete sequence Length = 134793 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 316 cctcaccgccaccctcaccctcacc 340 ||||||| ||||||||||||||||| Sbjct: 50998 cctcacccccaccctcaccctcacc 51022
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 319 caccgccaccctcaccctcaccggc 343 ||||||||||||||||| ||||||| Sbjct: 3786603 caccgccaccctcacccgcaccggc 3786627
>ref|XM_529508.1| PREDICTED: Pan troglodytes LOC452082 (LOC452082), mRNA Length = 1290 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 325 caccctcaccctcaccggcccccgcatccgca 356 ||||| |||||||||| || |||||||||||| Sbjct: 352 cacccacaccctcacccgcacccgcatccgca 321
>ref|XM_465855.1| Oryza sativa (japonica cultivar-group), mRNA Length = 345 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 319 caccgccaccctcaccctcaccggcccc 346 |||||||||| |||||||||||| |||| Sbjct: 309 caccgccaccatcaccctcaccgacccc 336
>gb|AC111097.10| Mus musculus chromosome 3, clone RP23-174G7, complete sequence Length = 206043 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 ctgtgcactcaccacctctgcttc 55 |||||| ||||||||||||||||| Sbjct: 46729 ctgtgctctcaccacctctgcttc 46706
>gb|AF220656.1| Homo sapiens apoptosis-associated nuclear protein PHLDA1 (PHLDA1) mRNA, partial cds Length = 3227 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 325 caccctcaccctcaccggcccccgcatccgca 356 ||||| |||||||||| || |||||||||||| Sbjct: 47 cacccacaccctcacccgcacccgcatccgca 78
>ref|XM_982990.1| PREDICTED: Mus musculus complement component factor i (Cfi), mRNA Length = 2110 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 ctgtgcactcaccacctctgcttc 55 |||||| ||||||||||||||||| Sbjct: 58 ctgtgctctcaccacctctgcttc 81
>gb|AC115286.3| Homo sapiens chromosome 1 clone RP4-657M3, complete sequence Length = 125032 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 cctcaccgccaccctcaccctcac 339 ||||||| |||||||||||||||| Sbjct: 3383 cctcacctccaccctcaccctcac 3360
>emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091D06, complete sequence Length = 174570 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 ctcgttttcccttttcccccacgg 282 |||||||||||||||||| ||||| Sbjct: 162627 ctcgttttcccttttcccacacgg 162650
>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence Length = 143585 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 ctcgttttcccttttcccccacgg 282 |||||||||||||||||| ||||| Sbjct: 9267 ctcgttttcccttttcccacacgg 9290
>gb|AC011611.26| Homo sapiens 12 BAC RP11-290L1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179085 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 325 caccctcaccctcaccggcccccgcatccgca 356 ||||| |||||||||| || |||||||||||| Sbjct: 119504 cacccacaccctcacccgcacccgcatccgca 119473
>emb|CR607629.1| full-length cDNA clone CS0DK012YN13 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1567 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 325 caccctcaccctcaccggcccccgcatccgca 356 ||||| |||||||||| || |||||||||||| Sbjct: 937 cacccacaccctcacccgcacccgcatccgca 968
>emb|CR603389.1| full-length cDNA clone CS0DE011YC06 of Placenta of Homo sapiens (human) Length = 1600 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 325 caccctcaccctcaccggcccccgcatccgca 356 ||||| |||||||||| || |||||||||||| Sbjct: 939 cacccacaccctcacccgcacccgcatccgca 970
>gb|AC156278.8| Mus musculus 6 BAC RP24-249N9 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162919 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cactcaccgcctccttccaa 178 |||||||||||||||||||| Sbjct: 25396 cactcaccgcctccttccaa 25415
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 ccttcttcctcgacggccgc 427 |||||||||||||||||||| Sbjct: 819353 ccttcttcctcgacggccgc 819334
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 ctcgttttcccttttcccccacgg 282 |||||||||||||||||| ||||| Sbjct: 26941567 ctcgttttcccttttcccacacgg 26941590
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 319 caccgccaccctcaccctcaccggcccc 346 |||||||||| |||||||||||| |||| Sbjct: 17913538 caccgccaccatcaccctcaccgacccc 17913565
>dbj|AB081277.2| Aotus azarai boliviensis LWS/MWS-29X gene for red-green sensitive cone visual pigment, complete cds Length = 6859 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 ctgtgcactcaccacctctgcttc 55 ||||||| |||||||||||||||| Sbjct: 3990 ctgtgcagtcaccacctctgcttc 3967
>dbj|AB081271.2| Aotus lemurinus griseimembra LWS/MWS-14Y gene for red-green sensitive cone visual pigment, complete cds Length = 6287 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 ctgtgcactcaccacctctgcttc 55 ||||||| |||||||||||||||| Sbjct: 3422 ctgtgcagtcaccacctctgcttc 3399
>dbj|AB081265.2| Aotus lemurinus griseimembra LWS/MWS-14X gene for red-green sensitive cone visual pigment, complete cds Length = 6388 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 ctgtgcactcaccacctctgcttc 55 ||||||| |||||||||||||||| Sbjct: 3531 ctgtgcagtcaccacctctgcttc 3508
>dbj|AB063011.1| Macaca fascicularis brain cDNA clone:QmoA-11189, similar to human tripartite motif-containing 46 (TRIM46), mRNA, NM_025058.1 Length = 2679 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 cttcttcctcgacggccgct 428 |||||||||||||||||||| Sbjct: 1663 cttcttcctcgacggccgct 1682
>dbj|AB063010.1| Macaca fascicularis brain cDNA clone:QmoA-11185, similar to human tripartite motif-containing 46 (TRIM46), mRNA, NM_025058.1 Length = 2679 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 cttcttcctcgacggccgct 428 |||||||||||||||||||| Sbjct: 1663 cttcttcctcgacggccgct 1682
>dbj|AB056399.1| Macaca fascicularis brain cDNA, clone:QflA-10739, similar to human tripartite motif-containing 46 (TRIM46), mRNA, NM_025058.1 Length = 2716 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 cttcttcctcgacggccgct 428 |||||||||||||||||||| Sbjct: 1701 cttcttcctcgacggccgct 1720
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 gcgccgccacggaagaatcc 27 |||||||||||||||||||| Sbjct: 3069336 gcgccgccacggaagaatcc 3069317
>gb|AF239986.1|AF239986 Homo sapiens apoptosis-associated nuclear protein (PHLDA1) gene, complete cds Length = 4262 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 325 caccctcaccctcaccggcccccgcatccgca 356 ||||| |||||||||| || |||||||||||| Sbjct: 2877 cacccacaccctcacccgcacccgcatccgca 2908
>dbj|AP006620.1| Nocardia farcinica IFM 10152 plasmid pNF2 DNA, complete sequence Length = 87093 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 caccgacgacaacgaaaccctctc 159 |||||||||| ||||||||||||| Sbjct: 22285 caccgacgaccacgaaaccctctc 22262
>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_B06 Length = 99637 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 319 caccgccaccctcaccctcaccggcccc 346 |||||||||| |||||||||||| |||| Sbjct: 48171 caccgccaccatcaccctcaccgacccc 48198
>dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654A08 Length = 154812 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 319 caccgccaccctcaccctcaccggcccc 346 |||||||||| |||||||||||| |||| Sbjct: 153069 caccgccaccatcaccctcaccgacccc 153096
>emb|AJ340796.1|HSA340796 Homo sapiens genomic sequence surrounding NotI site, clone NR5-DH14RS Length = 777 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 cctcaccgccaccctcaccctcac 339 ||||||| |||||||||||||||| Sbjct: 362 cctcacctccaccctcaccctcac 339
>gb|BC110820.1| Homo sapiens pleckstrin homology-like domain, family A, member 1, mRNA (cDNA clone MGC:131738 IMAGE:6502812), complete cds Length = 2654 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 325 caccctcaccctcaccggcccccgcatccgca 356 ||||| |||||||||| || |||||||||||| Sbjct: 927 cacccacaccctcacccgcacccgcatccgca 958
>ref|NM_007350.3| Homo sapiens pleckstrin homology-like domain, family A, member 1 (PHLDA1), mRNA Length = 5913 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 325 caccctcaccctcaccggcccccgcatccgca 356 ||||| |||||||||| || |||||||||||| Sbjct: 1128 cacccacaccctcacccgcacccgcatccgca 1159
>emb|AL732384.1|CNS08C8X Leptosphaeria maculans : genomic region surrounding the avirulence gene AvrLm1; putative centromeric or peri-centromeric region clone A3 of library Lm3HLP1 from strain v23.1.3 of Mat- Leptosphaeria maculans Length = 75030 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 caccggcccccgcatccgca 356 |||||||||||||||||||| Sbjct: 67321 caccggcccccgcatccgca 67340
>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence Length = 53591 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 316 cctcaccgccaccctcaccctcaccggccccc 347 ||||||| |||||| ||||||||||| ||||| Sbjct: 37950 cctcacctccacccccaccctcaccgcccccc 37981
>gb|BC018929.2| Homo sapiens pleckstrin homology-like domain, family A, member 1, mRNA (cDNA clone MGC:14398 IMAGE:4301251), complete cds Length = 1659 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 325 caccctcaccctcaccggcccccgcatccgca 356 ||||| |||||||||| || |||||||||||| Sbjct: 936 cacccacaccctcacccgcacccgcatccgca 967
>emb|Z50194.1|HSPQPROT H.sapiens mRNA for PQ-rich protein Length = 1412 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 325 caccctcaccctcaccggcccccgcatccgca 356 ||||| |||||||||| || |||||||||||| Sbjct: 1249 cacccacaccctcacccgcacccgcatccgca 1280 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,186,784 Number of Sequences: 3902068 Number of extensions: 3186784 Number of successful extensions: 69946 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69603 Number of HSP's gapped (non-prelim): 343 length of query: 485 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 463 effective length of database: 17,147,199,772 effective search space: 7939153494436 effective search space used: 7939153494436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
