ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29d06 |
|---|---|
| Clone Library Name | barley_pub |
>KRA31_SHEEP (P02446) Keratin-associated protein 3-1 (Keratin, high sulfur| matrix protein, IIIB2) Length = 97 Score = 33.1 bits (74), Expect = 0.39 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = -2 Query: 470 GTGTAVSSRNMXCSAKSSVAVPKCCPFSLSLLGSYKFNSSKFFCHFPDESSF*KTTCMLM 291 G T + S + C + V +P CP ++SLL ++S C +PD TC L+ Sbjct: 13 GPATTICSSDKFC--RCGVCLPSTCPHNISLLQPTCCDNSPVPCVYPDTY---VPTCFLL 67 Query: 290 NS 285 NS Sbjct: 68 NS 69
>TNNC1_MOUSE (P19123) Troponin C, slow skeletal and cardiac muscles (TN-C)| Length = 161 Score = 31.6 bits (70), Expect = 1.1 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNLLEL-NLYEPRRDKLKGQHLGTATLDLAEHXM 441 SG ++F+EF+ + V K+DS GK ++ L +L +++ D +DL E M Sbjct: 69 SGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNAD---------GYIDLDELKM 119 Query: 442 FLEDT 456 L+ T Sbjct: 120 MLQAT 124
>TNNC1_CHICK (P09860) Troponin C, slow skeletal and cardiac muscles (TN-C)| Length = 161 Score = 31.2 bits (69), Expect = 1.5 Identities = 13/32 (40%), Positives = 22/32 (68%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNLLEL 360 SG ++F+EF+ + V K+DS GK ++ L +L Sbjct: 69 SGTVDFDEFLVMMVRCMKDDSKGKTEEELSDL 100
>BMP4_CHICK (Q90752) Bone morphogenetic protein 4 precursor (BMP-4)| Length = 405 Score = 31.2 bits (69), Expect = 1.5 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 4/102 (3%) Frame = +1 Query: 130 IQEISPWPPSESLKSLRSVVLFWENGERNSGKTNTVAPSVRSGSTSGKIEFNEFISIQVV 309 +QEIS P S +V F S + AP +R + NE IS + + Sbjct: 100 LQEISLQYPERSASRANTVRSFHHEEHLESVPGPSEAPRIRFVFNLSSVPDNEVISSEEL 159 Query: 310 F----QKEDSSGKWQKNLLELNLYEPRRDKLKGQHLGTATLD 423 Q E+ S W++ +N+YE + + T LD Sbjct: 160 RLYREQVEEPSAAWERGFHRINIYEVMKPLSERSQAITRLLD 201
>KRA31_CAPHI (P02447) Keratin-associated protein 3-1 (Keratin, high sulfur| matrix protein, IIIB2) (M1.2 protein) Length = 97 Score = 31.2 bits (69), Expect = 1.5 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = -2 Query: 470 GTGTAVSSRNMXCSAKSSVAVPKCCPFSLSLLGSYKFNSSKFFCHFPDESSF*KTTCMLM 291 G T + S + C + V +P CP +SLL ++S H PD TC L+ Sbjct: 13 GPATTICSSDKFC--RCGVCLPSTCPHDISLLQPTFCDNSPVPYHVPDTY---VPTCFLL 67 Query: 290 NS 285 NS Sbjct: 68 NS 69
>TNNC1_RABIT (P02591) Troponin C, slow skeletal and cardiac muscles (TN-C)| Length = 161 Score = 30.8 bits (68), Expect = 1.9 Identities = 13/32 (40%), Positives = 22/32 (68%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNLLEL 360 SG ++F+EF+ + V K+DS GK ++ L +L Sbjct: 69 SGTVDFDEFLVMMVRCMKDDSKGKSEEELSDL 100
>TNNC1_PIG (P63317) Troponin C, slow skeletal and cardiac muscles (TN-C)| Length = 161 Score = 30.8 bits (68), Expect = 1.9 Identities = 13/32 (40%), Positives = 22/32 (68%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNLLEL 360 SG ++F+EF+ + V K+DS GK ++ L +L Sbjct: 69 SGTVDFDEFLVMMVRCMKDDSKGKSEEELSDL 100
>TNNC1_HUMAN (P63316) Troponin C, slow skeletal and cardiac muscles (TN-C)| Length = 161 Score = 30.8 bits (68), Expect = 1.9 Identities = 13/32 (40%), Positives = 22/32 (68%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNLLEL 360 SG ++F+EF+ + V K+DS GK ++ L +L Sbjct: 69 SGTVDFDEFLVMMVRCMKDDSKGKSEEELSDL 100
>TNNC1_BOVIN (P63315) Troponin C, slow skeletal and cardiac muscles (TN-C)| Length = 161 Score = 30.8 bits (68), Expect = 1.9 Identities = 13/32 (40%), Positives = 22/32 (68%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNLLEL 360 SG ++F+EF+ + V K+DS GK ++ L +L Sbjct: 69 SGTVDFDEFLVMMVRCMKDDSKGKSEEELSDL 100
>TNNC2_RANES (P02589) Troponin C, skeletal muscle| Length = 162 Score = 30.4 bits (67), Expect = 2.5 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNLLE 357 SG I+F EF+ + V KED+ GK ++ L E Sbjct: 70 SGTIDFEEFLVMMVRQMKEDAQGKSEEELAE 100
>TNNC2_RABIT (P02586) Troponin C, skeletal muscle| Length = 159 Score = 30.4 bits (67), Expect = 2.5 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNLLE 357 SG I+F EF+ + V KED+ GK ++ L E Sbjct: 67 SGTIDFEEFLVMMVRQMKEDAKGKSEEELAE 97
>TNNC2_PIG (P02587) Troponin C, skeletal muscle| Length = 159 Score = 30.4 bits (67), Expect = 2.5 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNLLE 357 SG I+F EF+ + V KED+ GK ++ L E Sbjct: 67 SGTIDFEEFLVMMVRQMKEDAKGKSEEELAE 97
>TNNC2_MOUSE (P20801) Troponin C, skeletal muscle (STNC)| Length = 159 Score = 30.4 bits (67), Expect = 2.5 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNLLE 357 SG I+F EF+ + V KED+ GK ++ L E Sbjct: 67 SGTIDFEEFLVMMVRQMKEDAKGKSEEELAE 97
>TNNC2_HUMAN (P02585) Troponin C, skeletal muscle| Length = 159 Score = 30.4 bits (67), Expect = 2.5 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNLLE 357 SG I+F EF+ + V KED+ GK ++ L E Sbjct: 67 SGTIDFEEFLVMMVRQMKEDAKGKSEEELAE 97
>TNNC2_ANGAN (P81660) Troponin C, skeletal muscle (TNC)| Length = 160 Score = 29.6 bits (65), Expect = 4.3 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNLLE 357 SG I+F EF+ + V KED +GK ++ L E Sbjct: 68 SGTIDFEEFLVMMVRQLKEDQAGKSEEELAE 98
>PYRE_CRYNE (P18132) Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRT)| (OPRTase) Length = 225 Score = 29.6 bits (65), Expect = 4.3 Identities = 19/72 (26%), Positives = 30/72 (41%) Frame = +1 Query: 154 PSESLKSLRSVVLFWENGERNSGKTNTVAPSVRSGSTSGKIEFNEFISIQVVFQKEDSSG 333 P L + +V E G+ SGK+ G + I + + + +SSG Sbjct: 150 PEAKLVGIVQLVDRQEKGQSGSGKSTVQEVEEEFG-----VPVEPIIGLDDIVKYLESSG 204 Query: 334 KWQKNLLELNLY 369 KW+K L E+ Y Sbjct: 205 KWEKELQEVRKY 216
>MNN1_YEAST (P39106) Alpha-1,3-mannosyltransferase MNN1 (EC 2.4.1.-)| Length = 762 Score = 29.6 bits (65), Expect = 4.3 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = -2 Query: 329 DESSF*KTTCMLMNSLNSIFPDVDPERTEGATVFVFPELRSPFSQKRTTE 180 D+ S + L+ +LN+ FP+ DP+ + F F PF TTE Sbjct: 209 DKMSKERVQSKLIKTLNATFPNYDPDNFKKYDQFEFEHKMFPFINNFTTE 258
>TNNC2_MELGA (P10246) Troponin C, skeletal muscle| Length = 162 Score = 28.9 bits (63), Expect = 7.3 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNL 351 SG I+F EF+ + V KED+ GK ++ L Sbjct: 70 SGTIDFEEFLVMMVRQMKEDAKGKSEEEL 98
>TNNC2_CHICK (P02588) Troponin C, skeletal muscle| Length = 162 Score = 28.9 bits (63), Expect = 7.3 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +1 Query: 265 SGKIEFNEFISIQVVFQKEDSSGKWQKNL 351 SG I+F EF+ + V KED+ GK ++ L Sbjct: 70 SGTIDFEEFLVMMVRQMKEDAKGKSEEEL 98
>LEG9_RAT (P97840) Galectin-9 (36 kDa beta-galactoside-binding lectin) (Urate| transporter/channel) (UAT) Length = 354 Score = 28.9 bits (63), Expect = 7.3 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -3 Query: 472 EAPEQQCPRETXHALPSLVLQSPNAVPSAYPS 377 +AP Q T H++P +L +P P AYP+ Sbjct: 188 QAPVAQTIIHTVHSIPGQMLSTPGIPPMAYPT 219
>SOMA_FUGRU (O12980) Somatotropin precursor (Growth hormone)| Length = 196 Score = 28.9 bits (63), Expect = 7.3 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -3 Query: 115 LHGWQHPSLS*YGGLAPLLKH*KVGII 35 + W PSLS GGL+P L K GI+ Sbjct: 97 IESWDFPSLSLSGGLSPKLSDLKTGIL 123
>ORC3_HUMAN (Q9UBD5) Origin recognition complex subunit 3 (Origin recognition| complex subunit Latheo) Length = 711 Score = 28.5 bits (62), Expect = 9.6 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%) Frame = +1 Query: 256 GSTSGKIE--FNEFISIQVVFQKEDSSGKWQKNLLELNLYEPRRDKLKGQHL 405 GST+ +IE +F S+ ++ED+SG K L + +LY ++ L+ + L Sbjct: 488 GSTAKRIEEFLAQFQSLDETKEEEDASGSQPKGLQKTDLYHLQKSLLEMKEL 539 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.130 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,443,658 Number of Sequences: 219361 Number of extensions: 1500450 Number of successful extensions: 3899 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3806 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3898 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
