ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Bet... 102 8e-23
2COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (B... 102 8e-23
3COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (B... 102 8e-23
4COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (B... 102 1e-22
5COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (B... 81 1e-16
6COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (B... 69 2e-13
7MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Mult... 31 1.5
8DAB1_MACFA (Q9BGX5) Disabled homolog 1 31 1.5
9DAB1_HUMAN (O75553) Disabled homolog 1 31 1.5
10ATG15_ASPFU (Q4X180) Putative lipase atg15 (EC 3.1.1.3) (Autopha... 31 1.5
11RSNL2_MOUSE (Q8CI96) Restin-like protein 2 30 4.4
12DOCK3_HUMAN (Q8IZD9) Dedicator of cytokinesis protein 3 (Modifie... 30 4.4
13DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7) 30 4.4
14Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71) 29 7.5
15RAD5_NEUCR (Q7S1P9) DNA repair protein rad-5 (EC 3.6.1.-) 29 7.5
16FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein ... 29 7.5
17DOCK3_MOUSE (Q8CIQ7) Dedicator of cytokinesis protein 3 (Modifie... 29 7.5
18GR43A_DROME (Q9V4K2) Putative gustatory receptor 43a 29 7.5
19BAG_STRAG (P27951) IgA FC receptor precursor (Beta antigen) (B a... 29 7.5
20ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ... 28 9.7
21POTE8_HUMAN (Q6S8J7) Prostate, ovary, testis expressed protein o... 28 9.7
22ANPRC_RAT (P41740) Atrial natriuretic peptide clearance receptor... 28 9.7
23AMEL_MONDO (Q28462) Amelogenin 28 9.7
24ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance recept... 28 9.7

>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score =  102 bits (254), Expect(2) = 8e-23
 Identities = 50/110 (45%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
 Frame = +2

Query: 122 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 298
           A +  C  L++    S   +   +K DLE  DV +K EA+K+ ++++LNGE LP L +T+
Sbjct: 3   AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62

Query: 299 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHP 448
           +R+VLP +DHTI+KLLL++ EI+ K    GR+L EMIL+C   R +LQHP
Sbjct: 63  IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHP 112



 Score = 23.5 bits (49), Expect(2) = 8e-23
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 445 PHEYIRGVTLRF 480
           P+E+IRG TLRF
Sbjct: 112 PNEFIRGSTLRF 123



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>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score =  102 bits (254), Expect(2) = 8e-23
 Identities = 50/110 (45%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
 Frame = +2

Query: 122 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 298
           A +  C  L++    S   +   +K DLE  DV +K EA+K+ ++++LNGE LP L +T+
Sbjct: 3   AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62

Query: 299 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHP 448
           +R+VLP +DHTI+KLLL++ EI+ K    GR+L EMIL+C   R +LQHP
Sbjct: 63  IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHP 112



 Score = 23.5 bits (49), Expect(2) = 8e-23
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 445 PHEYIRGVTLRF 480
           P+E+IRG TLRF
Sbjct: 112 PNEFIRGSTLRF 123



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>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score =  102 bits (254), Expect(2) = 8e-23
 Identities = 50/110 (45%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
 Frame = +2

Query: 122 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 298
           A +  C  L++    S   +   +K DLE  DV +K EA+K+ ++++LNGE LP L +T+
Sbjct: 3   AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62

Query: 299 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHP 448
           +R+VLP +DHTI+KLLL++ EI+ K    GR+L EMIL+C   R +LQHP
Sbjct: 63  IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHP 112



 Score = 23.5 bits (49), Expect(2) = 8e-23
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 445 PHEYIRGVTLRF 480
           P+E+IRG TLRF
Sbjct: 112 PNEFIRGSTLRF 123



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>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 964

 Score =  102 bits (254), Expect(2) = 1e-22
 Identities = 47/105 (44%), Positives = 69/105 (65%)
 Frame = +2

Query: 134 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVL 313
           PC  +++          ++K DLE  D   K+E +KR + LLLNGE  P L +T++R+VL
Sbjct: 6   PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65

Query: 314 PSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHP 448
           P ++HTI+KLLL++ EI+ K  A G++L EMIL+C   R +LQHP
Sbjct: 66  PVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVCDAYRKDLQHP 110



 Score = 22.7 bits (47), Expect(2) = 1e-22
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 445 PHEYIRGVTLRF 480
           P+E++RG TLRF
Sbjct: 110 PNEFLRGSTLRF 121



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>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 940

 Score = 80.9 bits (198), Expect(2) = 1e-16
 Identities = 39/104 (37%), Positives = 63/104 (60%)
 Frame = +2

Query: 137 CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLP 316
           C  LV  D   A   + +K  LE  +   K+ AMK  + +++NG++LP++ + V+R+V+P
Sbjct: 3   CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62

Query: 317 SEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHP 448
           S +  ++KLL  Y E+  K +  G +  EMIL C + RN+LQHP
Sbjct: 63  SRNKELKKLLYYYWEVCPKYNNDGTMKQEMILACNSFRNDLQHP 106



 Score = 24.3 bits (51), Expect(2) = 1e-16
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 445 PHEYIRGVTLRF 480
           P+E+IRG TLRF
Sbjct: 106 PNEFIRGATLRF 117



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>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 973

 Score = 69.3 bits (168), Expect(2) = 2e-13
 Identities = 33/86 (38%), Positives = 57/86 (66%)
 Frame = +2

Query: 191 KADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIID 370
           KA  +GSD   K++ MK  ++ +L G  +P L + ++R+V+PS++  ++KLL  Y EI+ 
Sbjct: 30  KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88

Query: 371 KRDAAGRVLPEMILICQNLRNNLQHP 448
           K    G++  EMIL+C  ++++LQHP
Sbjct: 89  KLAEDGKLRHEMILVCNAIQHDLQHP 114



 Score = 24.6 bits (52), Expect(2) = 2e-13
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +1

Query: 445 PHEYIRGVTLRF 480
           P+EYIRG TLRF
Sbjct: 114 PNEYIRGNTLRF 125



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>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug|
            resistance protein homolog) (P-glycoprotein)
          Length = 1336

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 21/77 (27%), Positives = 40/77 (51%)
 Frame = +2

Query: 95   PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGET 274
            P  +H +SG +  P    + FD  S A  +  +  L  ++V+  +EA ++  ++ ++G  
Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140

Query: 275  LPTLFITVVRYVLPSED 325
              TL + ++R   PSED
Sbjct: 1141 KSTL-VELLRKTYPSED 1156



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>DAB1_MACFA (Q9BGX5) Disabled homolog 1|
          Length = 555

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
 Frame = +3

Query: 3   PVNHSPPLPAPRSRSTS------AADPTTD 74
           P  +SPP PAPR  S S      A+DPTTD
Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506



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>DAB1_HUMAN (O75553) Disabled homolog 1|
          Length = 555

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
 Frame = +3

Query: 3   PVNHSPPLPAPRSRSTS------AADPTTD 74
           P  +SPP PAPR  S S      A+DPTTD
Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506



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>ATG15_ASPFU (Q4X180) Putative lipase atg15 (EC 3.1.1.3) (Autophagy-related|
           protein 15)
          Length = 650

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +1

Query: 373 ARCRWPRPPGDDPHLPESPQQPAAPH 450
           AR   P PPG DP LP+S Q   A H
Sbjct: 350 ARLGLPSPPGHDPRLPQSRQYTGAYH 375



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>RSNL2_MOUSE (Q8CI96) Restin-like protein 2|
          Length = 704

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
 Frame = +2

Query: 158 DKG---SAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 328
           DKG   +  + + +   LE +D AA  + +K+   +LL+   LP    T  + VLP+ DH
Sbjct: 218 DKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQ---MLLDAVPLPC---TSAKAVLPNSDH 271

Query: 329 TIQKLLL--LYLEIIDKRDAAGR 391
           T  + +L  L L++ D+   AG+
Sbjct: 272 TTSRAMLTSLGLKLGDRVVIAGQ 294



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>DOCK3_HUMAN (Q8IZD9) Dedicator of cytokinesis protein 3 (Modifier of cell|
            adhesion) (Presenilin-binding protein) (PBP protein)
          Length = 2030

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 358  RDH*QARCRWPRPPGDDPHLPESPQQPAAPH-EYIRGVTLR 477
            R H    C  P+ P D P LP  P  P  P  E+  GV LR
Sbjct: 1954 RSHSAPGCVIPQDPMDPPALPPKPYHPRLPALEHDEGVLLR 1994



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>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1085

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = -2

Query: 190  DLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 17
            DL+R  GGA+     + A ++ GA   +H  RRA    V+ +  A  + ++ GAG+ G
Sbjct: 868  DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924



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>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)|
          Length = 875

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 388 PRPPGDDPHLPESPQQP 438
           P+PP D P  P+ PQQP
Sbjct: 104 PQPPPDQPQQPQPPQQP 120



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>RAD5_NEUCR (Q7S1P9) DNA repair protein rad-5 (EC 3.6.1.-)|
          Length = 1222

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 466  RRGCTHGVLQVVAEILADED--HLREDAASGIALVNDLE 356
            R+ C H VL    EILADE+  ++  D A+G+A   DL+
Sbjct: 887  RQSCCHPVLVRNQEILADEEEANMAADVAAGLADDMDLQ 925



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>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor|
           (ECM3 homolog) (NV domain-containing protein 1)
          Length = 3160

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 254 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILI 415
           L L+  T   L +  + Y  PSED   ++L  L LEI+D   AA      M+++
Sbjct: 371 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEIVDPEGAASDPFAFMVVV 424



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>DOCK3_MOUSE (Q8CIQ7) Dedicator of cytokinesis protein 3 (Modifier of cell|
            adhesion) (Presenilin-binding protein) (PBP protein)
          Length = 2027

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 358  RDH*QARCRWPRPPGDDPHLPESPQQPAAPH-EYIRGVTLR 477
            R H    C  P+ P D P LP  P  P  P  E+  G+ LR
Sbjct: 1951 RSHSAPGCVLPQDPMDPPALPPKPYHPRLPALEHDEGMLLR 1991



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>GR43A_DROME (Q9V4K2) Putative gustatory receptor 43a|
          Length = 427

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +2

Query: 230 EAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMI 409
           E++ + V LL N   +  LFI V   +     H +     L+LE++ KRD  G +  +M+
Sbjct: 279 ESLGKCVHLLSNSFGIAVLFILVSCLL-----HLVATAYFLFLELLSKRD-NGYLWVQML 332

Query: 410 LIC 418
            IC
Sbjct: 333 WIC 335



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>BAG_STRAG (P27951) IgA FC receptor precursor (Beta antigen) (B antigen)|
          Length = 1164

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 388 PRPPGDDPHLPESPQQPAAP 447
           P+ P D PH+PESP+ P AP
Sbjct: 845 PQAP-DTPHVPESPKAPEAP 863



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>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 357

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 82  CGVSVVGSAAEVDRDLGAGRGGEWL 8
           C V+ +G A E D  L  GRG  WL
Sbjct: 300 CVVNAIGEAREADIGLACGRGFAWL 324



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>POTE8_HUMAN (Q6S8J7) Prostate, ovary, testis expressed protein on chromosome 8|
          Length = 498

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
 Frame = +2

Query: 125 MDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGE--TLPTLF-IT 295
           +D+ C L V   K   A+   ++   +           + A+MLL +G    LP ++  T
Sbjct: 119 LDRQCQLHVFDSKKRTALIKAVQCQED-----------ECALMLLQHGTDPNLPDMYGNT 167

Query: 296 VVRYVLPSEDHTIQKLLLLYLEIIDKRDAAG 388
            + Y + +ED  + K LLLY   I+ ++  G
Sbjct: 168 ALHYAVYNEDKLMAKTLLLYGADIESKNKGG 198



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>ANPRC_RAT (P41740) Atrial natriuretic peptide clearance receptor precursor|
           (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide
           C-type receptor)
          Length = 535

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +2

Query: 197 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 328
           DL+  D+   ++  +R V++  +G+T+  + + V R+ + S D+
Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279



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>AMEL_MONDO (Q28462) Amelogenin|
          Length = 202

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +1

Query: 343 VAPLPRDH*QARCRWPRP----PGDDPHLPESPQQPAAPHEYIRGV 468
           V P+P  H  A  +  +P    PG  P+ P+  QQP  PH+ I+ +
Sbjct: 85  VMPVPGQHPMAPTQHHQPNLPQPGQQPYQPQPAQQP-QPHQPIQPI 129



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>ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance receptor precursor|
           (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide
           C-type receptor) (EF-2)
          Length = 536

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +2

Query: 197 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 328
           DL+  D+   ++  +R V++  +G+T+  + + V R+ + S D+
Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,012,216
Number of Sequences: 219361
Number of extensions: 967001
Number of successful extensions: 4733
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4721
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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