ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29d05 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 102 bits (254), Expect(2) = 8e-23 Identities = 50/110 (45%), Positives = 74/110 (67%), Gaps = 1/110 (0%) Frame = +2 Query: 122 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 298 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 299 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHP 448 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R +LQHP Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHP 112 Score = 23.5 bits (49), Expect(2) = 8e-23 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = +1 Query: 445 PHEYIRGVTLRF 480 P+E+IRG TLRF Sbjct: 112 PNEFIRGSTLRF 123
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 102 bits (254), Expect(2) = 8e-23 Identities = 50/110 (45%), Positives = 74/110 (67%), Gaps = 1/110 (0%) Frame = +2 Query: 122 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 298 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 299 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHP 448 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R +LQHP Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHP 112 Score = 23.5 bits (49), Expect(2) = 8e-23 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = +1 Query: 445 PHEYIRGVTLRF 480 P+E+IRG TLRF Sbjct: 112 PNEFIRGSTLRF 123
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 102 bits (254), Expect(2) = 8e-23 Identities = 50/110 (45%), Positives = 74/110 (67%), Gaps = 1/110 (0%) Frame = +2 Query: 122 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 298 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 299 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHP 448 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R +LQHP Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHP 112 Score = 23.5 bits (49), Expect(2) = 8e-23 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = +1 Query: 445 PHEYIRGVTLRF 480 P+E+IRG TLRF Sbjct: 112 PNEFIRGSTLRF 123
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 102 bits (254), Expect(2) = 1e-22 Identities = 47/105 (44%), Positives = 69/105 (65%) Frame = +2 Query: 134 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVL 313 PC +++ ++K DLE D K+E +KR + LLLNGE P L +T++R+VL Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65 Query: 314 PSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHP 448 P ++HTI+KLLL++ EI+ K A G++L EMIL+C R +LQHP Sbjct: 66 PVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVCDAYRKDLQHP 110 Score = 22.7 bits (47), Expect(2) = 1e-22 Identities = 8/12 (66%), Positives = 11/12 (91%) Frame = +1 Query: 445 PHEYIRGVTLRF 480 P+E++RG TLRF Sbjct: 110 PNEFLRGSTLRF 121
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 80.9 bits (198), Expect(2) = 1e-16 Identities = 39/104 (37%), Positives = 63/104 (60%) Frame = +2 Query: 137 CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLP 316 C LV D A + +K LE + K+ AMK + +++NG++LP++ + V+R+V+P Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62 Query: 317 SEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHP 448 S + ++KLL Y E+ K + G + EMIL C + RN+LQHP Sbjct: 63 SRNKELKKLLYYYWEVCPKYNNDGTMKQEMILACNSFRNDLQHP 106 Score = 24.3 bits (51), Expect(2) = 1e-16 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = +1 Query: 445 PHEYIRGVTLRF 480 P+E+IRG TLRF Sbjct: 106 PNEFIRGATLRF 117
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 69.3 bits (168), Expect(2) = 2e-13 Identities = 33/86 (38%), Positives = 57/86 (66%) Frame = +2 Query: 191 KADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIID 370 KA +GSD K++ MK ++ +L G +P L + ++R+V+PS++ ++KLL Y EI+ Sbjct: 30 KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88 Query: 371 KRDAAGRVLPEMILICQNLRNNLQHP 448 K G++ EMIL+C ++++LQHP Sbjct: 89 KLAEDGKLRHEMILVCNAIQHDLQHP 114 Score = 24.6 bits (52), Expect(2) = 2e-13 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = +1 Query: 445 PHEYIRGVTLRF 480 P+EYIRG TLRF Sbjct: 114 PNEYIRGNTLRF 125
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 31.2 bits (69), Expect = 1.5 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +2 Query: 95 PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGET 274 P +H +SG + P + FD S A + + L ++V+ +EA ++ ++ ++G Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140 Query: 275 LPTLFITVVRYVLPSED 325 TL + ++R PSED Sbjct: 1141 KSTL-VELLRKTYPSED 1156
>DAB1_MACFA (Q9BGX5) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 1.5 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 3 PVNHSPPLPAPRSRSTS------AADPTTD 74 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>DAB1_HUMAN (O75553) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 1.5 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 3 PVNHSPPLPAPRSRSTS------AADPTTD 74 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>ATG15_ASPFU (Q4X180) Putative lipase atg15 (EC 3.1.1.3) (Autophagy-related| protein 15) Length = 650 Score = 31.2 bits (69), Expect = 1.5 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = +1 Query: 373 ARCRWPRPPGDDPHLPESPQQPAAPH 450 AR P PPG DP LP+S Q A H Sbjct: 350 ARLGLPSPPGHDPRLPQSRQYTGAYH 375
>RSNL2_MOUSE (Q8CI96) Restin-like protein 2| Length = 704 Score = 29.6 bits (65), Expect = 4.4 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Frame = +2 Query: 158 DKG---SAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 328 DKG + + + + LE +D AA + +K+ +LL+ LP T + VLP+ DH Sbjct: 218 DKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQ---MLLDAVPLPC---TSAKAVLPNSDH 271 Query: 329 TIQKLLL--LYLEIIDKRDAAGR 391 T + +L L L++ D+ AG+ Sbjct: 272 TTSRAMLTSLGLKLGDRVVIAGQ 294
>DOCK3_HUMAN (Q8IZD9) Dedicator of cytokinesis protein 3 (Modifier of cell| adhesion) (Presenilin-binding protein) (PBP protein) Length = 2030 Score = 29.6 bits (65), Expect = 4.4 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 358 RDH*QARCRWPRPPGDDPHLPESPQQPAAPH-EYIRGVTLR 477 R H C P+ P D P LP P P P E+ GV LR Sbjct: 1954 RSHSAPGCVIPQDPMDPPALPPKPYHPRLPALEHDEGVLLR 1994
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 29.6 bits (65), Expect = 4.4 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -2 Query: 190 DLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 17 DL+R GGA+ + A ++ GA +H RRA V+ + A + ++ GAG+ G Sbjct: 868 DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924
>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)| Length = 875 Score = 28.9 bits (63), Expect = 7.5 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 388 PRPPGDDPHLPESPQQP 438 P+PP D P P+ PQQP Sbjct: 104 PQPPPDQPQQPQPPQQP 120
>RAD5_NEUCR (Q7S1P9) DNA repair protein rad-5 (EC 3.6.1.-)| Length = 1222 Score = 28.9 bits (63), Expect = 7.5 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%) Frame = -2 Query: 466 RRGCTHGVLQVVAEILADED--HLREDAASGIALVNDLE 356 R+ C H VL EILADE+ ++ D A+G+A DL+ Sbjct: 887 RQSCCHPVLVRNQEILADEEEANMAADVAAGLADDMDLQ 925
>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) (NV domain-containing protein 1) Length = 3160 Score = 28.9 bits (63), Expect = 7.5 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +2 Query: 254 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILI 415 L L+ T L + + Y PSED ++L L LEI+D AA M+++ Sbjct: 371 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEIVDPEGAASDPFAFMVVV 424
>DOCK3_MOUSE (Q8CIQ7) Dedicator of cytokinesis protein 3 (Modifier of cell| adhesion) (Presenilin-binding protein) (PBP protein) Length = 2027 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 358 RDH*QARCRWPRPPGDDPHLPESPQQPAAPH-EYIRGVTLR 477 R H C P+ P D P LP P P P E+ G+ LR Sbjct: 1951 RSHSAPGCVLPQDPMDPPALPPKPYHPRLPALEHDEGMLLR 1991
>GR43A_DROME (Q9V4K2) Putative gustatory receptor 43a| Length = 427 Score = 28.9 bits (63), Expect = 7.5 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = +2 Query: 230 EAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMI 409 E++ + V LL N + LFI V + H + L+LE++ KRD G + +M+ Sbjct: 279 ESLGKCVHLLSNSFGIAVLFILVSCLL-----HLVATAYFLFLELLSKRD-NGYLWVQML 332 Query: 410 LIC 418 IC Sbjct: 333 WIC 335
>BAG_STRAG (P27951) IgA FC receptor precursor (Beta antigen) (B antigen)| Length = 1164 Score = 28.9 bits (63), Expect = 7.5 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +1 Query: 388 PRPPGDDPHLPESPQQPAAP 447 P+ P D PH+PESP+ P AP Sbjct: 845 PQAP-DTPHVPESPKAPEAP 863
>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 82 CGVSVVGSAAEVDRDLGAGRGGEWL 8 C V+ +G A E D L GRG WL Sbjct: 300 CVVNAIGEAREADIGLACGRGFAWL 324
>POTE8_HUMAN (Q6S8J7) Prostate, ovary, testis expressed protein on chromosome 8| Length = 498 Score = 28.5 bits (62), Expect = 9.7 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = +2 Query: 125 MDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGE--TLPTLF-IT 295 +D+ C L V K A+ ++ + + A+MLL +G LP ++ T Sbjct: 119 LDRQCQLHVFDSKKRTALIKAVQCQED-----------ECALMLLQHGTDPNLPDMYGNT 167 Query: 296 VVRYVLPSEDHTIQKLLLLYLEIIDKRDAAG 388 + Y + +ED + K LLLY I+ ++ G Sbjct: 168 ALHYAVYNEDKLMAKTLLLYGADIESKNKGG 198
>ANPRC_RAT (P41740) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) Length = 535 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +2 Query: 197 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 328 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>AMEL_MONDO (Q28462) Amelogenin| Length = 202 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Frame = +1 Query: 343 VAPLPRDH*QARCRWPRP----PGDDPHLPESPQQPAAPHEYIRGV 468 V P+P H A + +P PG P+ P+ QQP PH+ I+ + Sbjct: 85 VMPVPGQHPMAPTQHHQPNLPQPGQQPYQPQPAQQP-QPHQPIQPI 129
>ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) (EF-2) Length = 536 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +2 Query: 197 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 328 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,012,216 Number of Sequences: 219361 Number of extensions: 967001 Number of successful extensions: 4733 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4307 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4721 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
