ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl29d01 |
|---|---|
| Clone Library Name | barley_pub |
>IPO11_HUMAN (Q9UI26) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)| Length = 975 Score = 37.7 bits (86), Expect = 0.015 Identities = 26/69 (37%), Positives = 34/69 (49%) Frame = +2 Query: 263 SMSLDVTQILLSAQSADGSIRKHAEESLKQFQGQNLPGFXXXXXXELANNEKPEESRRLA 442 S S V Q+L A S D ++ K AEE LKQ++ Q PGF N+ R LA Sbjct: 5 SASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQ--PGFYSVLLNIFTNHTLDINVRWLA 62 Query: 443 GLILKNALD 469 L K+ +D Sbjct: 63 VLYFKHGID 71
>IPO11_MOUSE (Q8K2V6) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)| Length = 975 Score = 37.4 bits (85), Expect = 0.020 Identities = 26/69 (37%), Positives = 34/69 (49%) Frame = +2 Query: 263 SMSLDVTQILLSAQSADGSIRKHAEESLKQFQGQNLPGFXXXXXXELANNEKPEESRRLA 442 S S V Q+L A S D ++ K AEE LKQ++ Q PGF N+ R LA Sbjct: 5 SASSVVLQVLTQATSQDTAVLKPAEEQLKQWETQ--PGFYSVLLNIFTNHTLDINVRWLA 62 Query: 443 GLILKNALD 469 L K+ +D Sbjct: 63 VLYFKHGID 71
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 35.0 bits (79), Expect = 0.099 Identities = 20/67 (29%), Positives = 32/67 (47%) Frame = +2 Query: 272 LDVTQILLSAQSADGSIRKHAEESLKQFQGQNLPGFXXXXXXELANNEKPEESRRLAGLI 451 ++ + L S D ++R +AE+ L+ + + ELAN+ R AGL Sbjct: 1 MNAGEFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLA 60 Query: 452 LKNALDA 472 LKNA+ A Sbjct: 61 LKNAITA 67
>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)| Length = 890 Score = 32.7 bits (73), Expect = 0.49 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +2 Query: 278 VTQILLSAQSADGSIRKHAEESLKQF-QGQNLPGFXXXXXXELANNEKPEESRRLAGLIL 454 + Q+L +QS D +I++ ++ L+Q Q + + +L + ++P +R L+GLIL Sbjct: 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLIL 72 Query: 455 KNALDA 472 KN + A Sbjct: 73 KNNVKA 78
>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9| region interaction protein) (MIP) Length = 890 Score = 32.7 bits (73), Expect = 0.49 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +2 Query: 278 VTQILLSAQSADGSIRKHAEESLKQF-QGQNLPGFXXXXXXELANNEKPEESRRLAGLIL 454 + Q+L +QS D +I++ ++ L+Q Q + + +L + ++P +R L+GLIL Sbjct: 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLIL 72 Query: 455 KNALDA 472 KN + A Sbjct: 73 KNNVKA 78
>IMB3_HUMAN (O00410) Importin beta-3 (Karyopherin beta-3) (Ran-binding protein| 5) (RanBP5) Length = 1097 Score = 30.8 bits (68), Expect = 1.9 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = +2 Query: 305 SADGSIRKHAEESLKQFQGQNLPGFXXXXXXELANNEKPEESRRLAGLILKNALDA 472 S D +RK AEE+ + GQ+ F + N EE+R++A ++L+ L + Sbjct: 20 SPDNVVRKQAEETYENIPGQSKITFLLQA---IRNTTAAEEARQMAAVLLRRLLSS 72
>PARD3_RAT (Q9Z340) Partitioning-defective 3 homolog (PARD-3) (PAR-3)| (Atypical PKC isotype-specific-interacting protein) (ASIP) (Atypical PKC-specific-binding protein) (ASBP) Length = 1337 Score = 30.4 bits (67), Expect = 2.4 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Frame = +3 Query: 117 GLAPSPNRRATASAPSRDLGRLKLRRAVQLRHT--------RRRQLPPHLSSQQEESA 266 GL SP R A S + G+ +L V + H R LPPHLS Q S+ Sbjct: 724 GLDESPTRNAALSRIMGESGKCQLSPTVNMPHDDTVMIEDDRLPVLPPHLSDQSSSSS 781
>IMB_DROME (O18388) Importin beta subunit (Karyopherin beta-4 subunit)| (Protein ketel) Length = 884 Score = 30.4 bits (67), Expect = 2.4 Identities = 21/67 (31%), Positives = 29/67 (43%) Frame = +2 Query: 266 MSLDVTQILLSAQSADGSIRKHAEESLKQFQGQNLPGFXXXXXXELANNEKPEESRRLAG 445 +++ + IL S D + A+ L+Q NLP F L N +R AG Sbjct: 5 IAMQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILVNTANSAVARMAAG 64 Query: 446 LILKNAL 466 L LKN L Sbjct: 65 LQLKNHL 71
>PARD3_MOUSE (Q99NH2) Partitioning-defective 3 homolog (PARD-3) (PAR-3)| (Atypical PKC isotype-specific-interacting protein) (ASIP) (Ephrin-interacting protein) (PHIP) Length = 1333 Score = 30.0 bits (66), Expect = 3.2 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 8/58 (13%) Frame = +3 Query: 117 GLAPSPNRRATASAPSRDLGRLKLRRAVQLRHT--------RRRQLPPHLSSQQEESA 266 GL SP R A A SR +G+ +L V + H R LPPHLS Q S+ Sbjct: 724 GLDESPTRNA---ALSRIMGKCQLSPTVNMPHDDTVMIEDDRLPVLPPHLSDQSSSSS 778
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 30.0 bits (66), Expect = 3.2 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = +2 Query: 272 LDVTQILLSAQSADGSIRKHAEESLKQFQGQNLPGFXXXXXXELANNEKPEESRRLAGLI 451 +++ IL S D + A++ L++ +NLP F LAN + +R AGL Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 452 LKNAL 466 +KN+L Sbjct: 61 IKNSL 65
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 30.0 bits (66), Expect = 3.2 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = +2 Query: 272 LDVTQILLSAQSADGSIRKHAEESLKQFQGQNLPGFXXXXXXELANNEKPEESRRLAGLI 451 +++ IL S D + A++ L++ +NLP F LAN + +R AGL Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 452 LKNAL 466 +KN+L Sbjct: 61 IKNSL 65
>TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b)| Length = 897 Score = 30.0 bits (66), Expect = 3.2 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +2 Query: 278 VTQILLSAQSADGSIRKHAEESLKQFQGQNLPGFXXXXXXELANNEKPEE-SRRLAGLIL 454 V Q+L +QS + + ++ ++ LKQ P F L + +E +R L+GLIL Sbjct: 13 VLQLLKDSQSPNTATQRIVQDKLKQLN--QFPDFNNYLIFVLTRLKSEDEPTRSLSGLIL 70 Query: 455 KNALDA 472 KN + A Sbjct: 71 KNNVKA 76
>TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b)| Length = 887 Score = 30.0 bits (66), Expect = 3.2 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +2 Query: 278 VTQILLSAQSADGSIRKHAEESLKQFQGQNLPGFXXXXXXELANNEKPEE-SRRLAGLIL 454 V Q+L +QS + + ++ ++ LKQ P F L + +E +R L+GLIL Sbjct: 13 VLQLLKDSQSPNTATQRIVQDKLKQLN--QFPDFNNYLIFVLTRLKSEDEPTRSLSGLIL 70 Query: 455 KNALDA 472 KN + A Sbjct: 71 KNNVKA 76
>IMB3_MOUSE (Q8BKC5) Importin beta-3 (Karyopherin beta-3) (Ran-binding protein| 5) (RanBP5) Length = 1097 Score = 29.3 bits (64), Expect = 5.4 Identities = 16/56 (28%), Positives = 29/56 (51%) Frame = +2 Query: 305 SADGSIRKHAEESLKQFQGQNLPGFXXXXXXELANNEKPEESRRLAGLILKNALDA 472 S D +RK AEE+ + G++ F + N EE+R++A ++L+ L + Sbjct: 20 SPDNVVRKQAEETYENIPGRSKITFLLQA---IRNTTAAEEARQMAAVLLRRLLSS 72
>NMD5_YEAST (P46970) Nonsense-mediated mRNA decay protein 5| Length = 1048 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = +2 Query: 272 LDVTQIL---LSAQSADGSIRKHAEESLKQFQGQNLPGFXXXXXXELANNEKPEESRRLA 442 +D+T++L + ++R +AE LK +PGF +A +E PE + A Sbjct: 1 MDITELLQCFACTLDHNAAVRTNAETHLKN--ASKVPGFLGACLDIIAADEVPENIKLSA 58 Query: 443 GLILKNAL 466 L KN + Sbjct: 59 SLYFKNKI 66
>ALF2_LAMJA (P53446) Fructose-bisphosphate aldolase, non-muscle type (EC| 4.1.2.13) Length = 364 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +3 Query: 321 LESMLKKASSSFRGKTSQVFCSPSQVSWPTTRNLRR 428 LE L K + G+ S++ CSP +V+ T LRR Sbjct: 224 LEGSLLKPNMVTAGQASKIRCSPQEVAMATVTALRR 259 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,245,689 Number of Sequences: 219361 Number of extensions: 675938 Number of successful extensions: 1730 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1708 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1730 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
