ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29c11 |
|---|---|
| Clone Library Name | barley_pub |
>RL4A_ARATH (P49691) 60S ribosomal protein L4-1 (L1)| Length = 407 Score = 175 bits (443), Expect = 5e-44 Identities = 82/126 (65%), Positives = 99/126 (78%), Gaps = 1/126 (0%) Frame = +1 Query: 76 RPLVSVKALEGDMATD-AAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQ 252 RPLV+V+ L+GDM+TD + V +P VMTAP+RPD++ FVH +S NSRQPYAVS+KAGHQ Sbjct: 8 RPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQ 67 Query: 253 TSAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRR 432 TSAESWGTGRAVSRIPRV NMCRGGRMFAPT+IWR+WHRRVN+ ++R Sbjct: 68 TSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKR 127 Query: 433 VAVASA 450 A+ SA Sbjct: 128 HAIVSA 133
>RL4B_ARATH (Q9SF40) 60S ribosomal protein L4-2 (L1)| Length = 406 Score = 174 bits (442), Expect = 7e-44 Identities = 81/126 (64%), Positives = 99/126 (78%), Gaps = 1/126 (0%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAG-VPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQ 252 RPLV+++ L+GDM+TD + V +P VMTAP+RPD++ FVH +S NSRQPYAVS+KAGHQ Sbjct: 7 RPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQ 66 Query: 253 TSAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRR 432 TSAESWGTGRAVSRIPRV NMCRGGRMFAPT+IWR+WHRRVN+ ++R Sbjct: 67 TSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKR 126 Query: 433 VAVASA 450 A+ SA Sbjct: 127 HAIVSA 132
>RL4_PRUAR (Q9XF97) 60S ribosomal protein L4 (L1)| Length = 408 Score = 171 bits (433), Expect = 8e-43 Identities = 83/126 (65%), Positives = 97/126 (76%), Gaps = 1/126 (0%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAG-VPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQ 252 RPLV+V++LEGDMATD V +P VM A IRPD++TFVH +S NSRQPYAVS+KAGHQ Sbjct: 9 RPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQ 68 Query: 253 TSAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRR 432 TSAESWGTGRAVSRIPRV NMCRGGRMFAPT+IWR+WHR++N+ +R Sbjct: 69 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKR 128 Query: 433 VAVASA 450 AV SA Sbjct: 129 YAVVSA 134
>RL4B_XENLA (P02385) 60S ribosomal protein L4-B (L1B) (Fragment)| Length = 396 Score = 150 bits (378), Expect = 2e-36 Identities = 74/125 (59%), Positives = 87/125 (69%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RPL+SV + +G+ T V MP V APIRPD++ FVH + N+RQPYAVS+ AGHQT Sbjct: 4 RPLISVYSEKGE--TSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQT 61 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRAV+RIPRV NMCRGGRMFAPT+ WR+WHRRVN +R Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 121 Query: 436 AVASA 450 AV SA Sbjct: 122 AVCSA 126
>RL4A_XENLA (P08429) 60S ribosomal protein L4-A (L1A)| Length = 396 Score = 148 bits (374), Expect = 5e-36 Identities = 73/125 (58%), Positives = 87/125 (69%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RPL+SV + +G+ + V MP V APIRPD++ FVH + N+RQPYAVS+ AGHQT Sbjct: 9 RPLISVYSEKGE--SSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQT 66 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRAV+RIPRV NMCRGGRMFAPT+ WR+WHRRVN +R Sbjct: 67 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 126 Query: 436 AVASA 450 AV SA Sbjct: 127 AVCSA 131
>RL4_HUMAN (P36578) 60S ribosomal protein L4 (L1)| Length = 426 Score = 146 bits (368), Expect = 3e-35 Identities = 71/125 (56%), Positives = 86/125 (68%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RPL+SV + +G+ + V +P V APIRPD++ FVH + N+RQPYAVS AGHQT Sbjct: 4 RPLISVYSEKGE--SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQT 61 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRAV+RIPRV NMCRGGRMFAPT+ WR+WHRRVN +R Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 121 Query: 436 AVASA 450 A+ SA Sbjct: 122 AICSA 126
>RL4_RAT (P50878) 60S ribosomal protein L4 (L1)| Length = 420 Score = 146 bits (368), Expect = 3e-35 Identities = 71/125 (56%), Positives = 86/125 (68%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RPL+SV + +G+ + V +P V APIRPD++ FVH + N+RQPYAVS AGHQT Sbjct: 4 RPLISVYSEKGE--SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQT 61 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRAV+RIPRV NMCRGGRMFAPT+ WR+WHRRVN +R Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 121 Query: 436 AVASA 450 A+ SA Sbjct: 122 AICSA 126
>RL4_CANFA (Q28346) 60S ribosomal protein L4 (L1)| Length = 420 Score = 146 bits (368), Expect = 3e-35 Identities = 71/125 (56%), Positives = 86/125 (68%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RPL+SV + +G+ + V +P V APIRPD++ FVH + N+RQPYAVS AGHQT Sbjct: 4 RPLISVYSEKGE--SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQT 61 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRAV+RIPRV NMCRGGRMFAPT+ WR+WHRRVN +R Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 121 Query: 436 AVASA 450 A+ SA Sbjct: 122 AICSA 126
>RL4_BOVIN (Q58DW0) 60S ribosomal protein L4| Length = 421 Score = 146 bits (368), Expect = 3e-35 Identities = 71/125 (56%), Positives = 86/125 (68%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RPL+SV + +G+ + V +P V APIRPD++ FVH + N+RQPYAVS AGHQT Sbjct: 4 RPLISVYSEKGE--SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQT 61 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRAV+RIPRV NMCRGGRMFAPT+ WR+WHRRVN +R Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 121 Query: 436 AVASA 450 A+ SA Sbjct: 122 AICSA 126
>RL4_MOUSE (Q9D8E6) 60S ribosomal protein L4 (L1)| Length = 418 Score = 146 bits (368), Expect = 3e-35 Identities = 71/125 (56%), Positives = 86/125 (68%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RPL+SV + +G+ + V +P V APIRPD++ FVH + N+RQPYAVS AGHQT Sbjct: 4 RPLISVYSEKGE--SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQT 61 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRAV+RIPRV NMCRGGRMFAPT+ WR+WHRRVN +R Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 121 Query: 436 AVASA 450 A+ SA Sbjct: 122 AICSA 126
>RL4_URECA (P49165) 60S ribosomal protein L4 (L1)| Length = 386 Score = 144 bits (364), Expect = 8e-35 Identities = 72/125 (57%), Positives = 86/125 (68%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RPL++V + +G A + V +P V APIRPD++ FVH + N RQPYAVS+KAGHQT Sbjct: 4 RPLITVHSDKG--AASESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQT 61 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRAV+RIPRV NMCRG RMFAPT+ WR+WHRRVN RR Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRH 121 Query: 436 AVASA 450 A+ SA Sbjct: 122 ALVSA 126
>RL4A_SCHPO (P35679) 60S ribosomal protein L4-A (L2)| Length = 363 Score = 140 bits (353), Expect = 1e-33 Identities = 67/125 (53%), Positives = 86/125 (68%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RP VS+ + +G ++++ + +P V APIRPD++ VH V+ N RQPYAVS KAGHQT Sbjct: 5 RPTVSIYSKDGSVSSET--IALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQT 62 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRA++RIPRV NMCR GRMFAPT+ WRKWH +VN +R Sbjct: 63 SAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRY 122 Query: 436 AVASA 450 A++SA Sbjct: 123 AISSA 127
>RL4_DROME (P09180) 60S ribosomal protein L4 (L1)| Length = 401 Score = 140 bits (352), Expect = 2e-33 Identities = 71/125 (56%), Positives = 86/125 (68%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RPLVSV + + A D + +P V APIRPDV+ VH+L+ N+RQ YAVS AGHQT Sbjct: 7 RPLVSVYTEKNEPAKDK-NICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQT 65 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRAV+RIPRV NMCRGGRMFAPT+ +R+WHR+VN+ RR Sbjct: 66 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRY 125 Query: 436 AVASA 450 A+ SA Sbjct: 126 ALVSA 130
>RL4B_SCHPO (Q9P784) 60S ribosomal protein L4-B| Length = 363 Score = 139 bits (351), Expect = 2e-33 Identities = 68/125 (54%), Positives = 85/125 (68%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RP VS+ +G ++++ + +P V APIRPD++ VH V+ N RQPYAVS KAGHQT Sbjct: 5 RPTVSIYNKDGSVSSET--LALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQT 62 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRA++RIPRV NMCR GRMFAPT+ WRKWH +VN +R Sbjct: 63 SAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRY 122 Query: 436 AVASA 450 A+ASA Sbjct: 123 AIASA 127
>RL4B_YEAST (P49626) 60S ribosomal protein L4-B (L2B) (RP2)| Length = 361 Score = 137 bits (346), Expect = 9e-33 Identities = 70/125 (56%), Positives = 85/125 (68%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RP V+V +L G+ +A +P+P V +APIRPD++ V V+ N RQ YAVS KAGHQT Sbjct: 2 RPQVTVHSLTGEATANA--LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT 59 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRAV+RIPRV NMCRGGRMFAPT+ WRKW+ +VN +R Sbjct: 60 SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY 119 Query: 436 AVASA 450 A ASA Sbjct: 120 ATASA 124
>RL4A_YEAST (P10664) 60S ribosomal protein L4-A (L2A) (RP2)| Length = 361 Score = 137 bits (346), Expect = 9e-33 Identities = 70/125 (56%), Positives = 85/125 (68%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RP V+V +L G+ +A +P+P V +APIRPD++ V V+ N RQ YAVS KAGHQT Sbjct: 2 RPQVTVHSLTGEATANA--LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT 59 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRAV+RIPRV NMCRGGRMFAPT+ WRKW+ +VN +R Sbjct: 60 SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY 119 Query: 436 AVASA 450 A ASA Sbjct: 120 ATASA 124
>RL4_TRYBB (P49669) 60S ribosomal protein L4 (L1)| Length = 374 Score = 130 bits (328), Expect = 1e-30 Identities = 65/125 (52%), Positives = 82/125 (65%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RP VSV + D +P V TAPIR DV+ FVH ++ NSRQPYAV+R +G + Sbjct: 4 RPSVSVYSASEDKVVGTCSLPA--VFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKH 61 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 S ESWGTGRAV+RIPR+ NMCRGGRMFAPT+I+R+WHR++N+ +R Sbjct: 62 STESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRF 121 Query: 436 AVASA 450 AV SA Sbjct: 122 AVVSA 126
>RL4_CAEEL (O02056) 60S ribosomal protein L4| Length = 344 Score = 118 bits (296), Expect = 6e-27 Identities = 61/125 (48%), Positives = 79/125 (63%) Frame = +1 Query: 76 RPLVSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQT 255 RPLV+V + + + +P V PIRPD+++F+ V N RQ +AV+ KAG Q Sbjct: 3 RPLVTV--YDEKYEATQSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 60 Query: 256 SAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRV 435 SAESWGTGRAV+RIPRV NMCRGG MFAP +++R+WHR VNI +R Sbjct: 61 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRY 120 Query: 436 AVASA 450 AV+SA Sbjct: 121 AVSSA 125
>RL4_ENTHI (O15594) 60S ribosomal protein L4 (L1) (Fragments)| Length = 245 Score = 70.1 bits (170), Expect = 2e-12 Identities = 35/70 (50%), Positives = 43/70 (61%) Frame = +1 Query: 238 KAGHQTSAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVN 417 KAG Q SA SWGTGRAV+RIPR+ NM R G MF+P + +RKW R+ Sbjct: 3 KAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTP 62 Query: 418 IRLRRVAVAS 447 ++RR AVAS Sbjct: 63 KQMRRFAVAS 72
>RL4_METKA (Q8TY91) 50S ribosomal protein L4P| Length = 260 Score = 65.5 bits (158), Expect = 6e-11 Identities = 39/117 (33%), Positives = 53/117 (45%) Frame = +1 Query: 100 LEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTG 279 LEG+ + V +P P+R D+I N RQPY +AG +TSAESWG G Sbjct: 8 LEGE---EVDTVELPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAG 64 Query: 280 RAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASA 450 V+ +PRV GG+ + W +RVN + RR A+ SA Sbjct: 65 HGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPTPEKDWTQRVNRKERRAALRSA 121
>RL4_METTH (O26111) 50S ribosomal protein L4P| Length = 254 Score = 60.1 bits (144), Expect = 2e-09 Identities = 37/122 (30%), Positives = 57/122 (46%) Frame = +1 Query: 85 VSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAE 264 + V +LEG+ + + +P + RPDVI QP+ AG +TSA+ Sbjct: 3 IKVYSLEGEAIDE---MELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQ 59 Query: 265 SWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVA 444 S+G GR V+ +PR+ GGR P R + +H R+N + RR+A+ Sbjct: 60 SYGAGRGVAMVPRIKNGSRAAFVPQAV-----GGRRAHPPRPQKNYHERINRKERRLAIR 114 Query: 445 SA 450 SA Sbjct: 115 SA 116
>RL4_METMA (Q8PV49) 50S ribosomal protein L4P| Length = 253 Score = 58.5 bits (140), Expect = 7e-09 Identities = 36/106 (33%), Positives = 48/106 (45%) Frame = +1 Query: 133 VPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVXX 312 + +P V A RPD+I N QPY S AG +TSA WG+GR VS +PR+ Sbjct: 17 IELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRLKN 76 Query: 313 XXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASA 450 +GGR P + +VN + RR A+ SA Sbjct: 77 SSRAARVPH-----AKGGRRAHPPKPEADRSEKVNTKERRYAIRSA 117
>RL4_METAC (Q8TRU6) 50S ribosomal protein L4P| Length = 253 Score = 57.8 bits (138), Expect = 1e-08 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 1/115 (0%) Frame = +1 Query: 109 DMATDAAG-VPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTGRA 285 D+ A G V +P V A RPD+I N QPY +G +TSA WG+GR Sbjct: 8 DLTGKAVGEVELPAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRG 67 Query: 286 VSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASA 450 VS +PR+ +GGR P + +VN + RR A+ SA Sbjct: 68 VSHVPRLVNSSRAARVPH-----AKGGRRAHPPKPEADRSEKVNTKERRYAIRSA 117
>RL4_HALSA (Q9HPD3) 50S ribosomal protein L4P| Length = 250 Score = 54.7 bits (130), Expect = 1e-07 Identities = 36/122 (29%), Positives = 56/122 (45%) Frame = +1 Query: 85 VSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAE 264 V+V+ L+GD DA + +P V P+RPD++ N Q Y AG +T+AE Sbjct: 3 VTVRDLDGD---DAGTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAE 59 Query: 265 SWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVA 444 S G+GR ++ +P+ GGR P + + VN + R+ AV Sbjct: 60 SQGSGRGMAHVPKANGQGARVPQTV-------GGRKAHPPKAEKDHGLDVNDKERKAAVR 112 Query: 445 SA 450 +A Sbjct: 113 AA 114
>RL4_AERPE (Q9YFM1) 50S ribosomal protein L4P| Length = 263 Score = 52.8 bits (125), Expect = 4e-07 Identities = 34/106 (32%), Positives = 48/106 (45%) Frame = +1 Query: 133 VPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVXX 312 V +P + P+R D+I QP AG +TSA S G GR V+R+PR+ Sbjct: 20 VVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVGRGVARVPRI-- 77 Query: 313 XXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASA 450 NM RGGR P R+ + +N + +R+A SA Sbjct: 78 ---KGSLRAALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATISA 120
>RL4_SULSO (Q9UXA6) 50S ribosomal protein L4P| Length = 267 Score = 52.4 bits (124), Expect = 5e-07 Identities = 33/106 (31%), Positives = 51/106 (48%) Frame = +1 Query: 133 VPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVXX 312 V +P + + P+R D+I V +S QP AG +TSAES+G ++R+PRV Sbjct: 23 VELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRVKN 82 Query: 313 XXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASA 450 GGR+ P + +K N++ +R+AV SA Sbjct: 83 SGEAALAPNTV-----GGRLAFPPSVNKKLAEEANVKEKRLAVISA 123
>RL4_PYRAE (Q8ZW51) 50S ribosomal protein L4P| Length = 283 Score = 51.6 bits (122), Expect = 9e-07 Identities = 33/108 (30%), Positives = 49/108 (45%) Frame = +1 Query: 127 AGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRV 306 A + P PIRPD+I + QP V AG + S ES+G G ++RIPR Sbjct: 40 ADIEAPLHFLEPIRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRY 99 Query: 307 XXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASA 450 RGGR P ++ +K H +N + +++A+ SA Sbjct: 100 KGSLWPRGCFAPNT---RGGRRAHPPKVEKKLHEEINKKEKKLAIRSA 144
>RL4_ARCFU (O28355) 50S ribosomal protein L4P| Length = 252 Score = 51.6 bits (122), Expect = 9e-07 Identities = 33/117 (28%), Positives = 52/117 (44%) Frame = +1 Query: 100 LEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTG 279 L+G++ + + +P V RPD+I + + RQPY + +G S E+WG G Sbjct: 8 LKGEVTEE---IELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPG 64 Query: 280 RAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASA 450 +R+PR GGR P + RKW ++N + R A+ SA Sbjct: 65 HGYARVPR-----WKLGRRAVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSA 116
>RL4_NANEQ (P60847) 50S ribosomal protein L4P| Length = 268 Score = 50.8 bits (120), Expect = 2e-06 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 10/122 (8%) Frame = +1 Query: 115 ATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSA------ESWGT 276 A+ + +P IR DVI + + RQPY S AG Q SA SW T Sbjct: 10 ASQVGNIELPPQFNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAWTSKRRRSWRT 69 Query: 277 --GRAVSRIPRVXXXXXXXXXXXXXXNMCRG--GRMFAPTRIWRKWHRRVNIRLRRVAVA 444 GR +SR+ R N+ + G+ P + + W+ ++N + RR+A+ Sbjct: 70 SYGRGISRVSRAILRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKINKKERRLAIR 129 Query: 445 SA 450 SA Sbjct: 130 SA 131
>RL4_THEAC (Q9HIR0) 50S ribosomal protein L4P| Length = 255 Score = 46.2 bits (108), Expect = 4e-05 Identities = 31/122 (25%), Positives = 54/122 (44%) Frame = +1 Query: 85 VSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAE 264 V + ++ G+M + + +P V +R D+I R +S + RQPY S AG + Sbjct: 5 VPIYSVSGEMKGE---IDLPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGH 61 Query: 265 SWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVA 444 + G +SR+PR+ GG+ R + + ++N R R++A Sbjct: 62 TTRPGLGISRMPRIAGGSRVVGIASAV-----GGKSAHSPRTTKNLYVKINDRERKMAKY 116 Query: 445 SA 450 SA Sbjct: 117 SA 118
>RL4_SULAC (Q4JB41) 50S ribosomal protein L4P| Length = 266 Score = 44.7 bits (104), Expect = 1e-04 Identities = 33/122 (27%), Positives = 55/122 (45%) Frame = +1 Query: 85 VSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAE 264 VSV L+G+ + + +P + P+R D+I V S QP AG +TSA Sbjct: 10 VSVLDLKGNQLEE---IELPLFFSYPVRKDLIRRVFLSEFTKSLQPKGRDPLAGKRTSAL 66 Query: 265 SWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVA 444 S+G ++R+PRV GGR+ P ++ VN++ +++ + Sbjct: 67 SFGINLGIARVPRVKGSGEAALAPNTV-----GGRLAFPPTTEKRLVEEVNLKEKKLGII 121 Query: 445 SA 450 SA Sbjct: 122 SA 123
>RL4_HALMA (P12735) 50S ribosomal protein L4P (Hmal4) (Hl6)| Length = 246 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/57 (36%), Positives = 31/57 (54%) Frame = +1 Query: 133 VPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPR 303 V +P V P+R D+I R N +Q Y AG +T AES+G+GR + +P+ Sbjct: 16 VDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK 72
>RL4_SULTO (Q975I2) 50S ribosomal protein L4P| Length = 266 Score = 43.1 bits (100), Expect = 3e-04 Identities = 29/106 (27%), Positives = 48/106 (45%) Frame = +1 Query: 133 VPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVXX 312 + +P + P+R D+I V + QP AG +TSA S+G ++R+PRV Sbjct: 23 IELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRVKT 82 Query: 313 XXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASA 450 GGR+ P + +K VN + +++A+ SA Sbjct: 83 TGEAALAPNTV-----GGRLAFPPTVEKKLVEEVNKKEKKLAIISA 123
>RL4_THEVO (Q97BX6) 50S ribosomal protein L4P| Length = 255 Score = 41.2 bits (95), Expect = 0.001 Identities = 27/106 (25%), Positives = 46/106 (43%) Frame = +1 Query: 133 VPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVXX 312 + +P + +R D+I R +S + RQPY S AG + + G +SR+PR+ Sbjct: 18 IDLPEIFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHTTKPGLGISRMPRIAG 77 Query: 313 XXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASA 450 GG+ R +K + +N + R++A SA Sbjct: 78 GSRVVGIASAV-----GGKSAHSPRSTKKLYVGINEKERKMAKFSA 118
>RL4_PYRKO (Q5JDI0) 50S ribosomal protein L4P| Length = 255 Score = 40.8 bits (94), Expect = 0.002 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 6/128 (4%) Frame = +1 Query: 85 VSVKALEGDMATDAAGVPMPHVMTAPIRPDVI------TFVHRLVSCNSRQPYAVSRKAG 246 V V LEG+ + + +P V + P RPD+I ++ HR+ QP +AG Sbjct: 3 VKVFNLEGEPVEE---IELPKVFSTPFRPDLIRRAVIASWTHRI------QPQGRDPQAG 53 Query: 247 HQTSAESWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRL 426 + E+ G G ++R+ R+ GGR P ++ + +N + Sbjct: 54 KRRVTENIGKGHGMARVERIKTSPRFAAFVPFAV----GGRRTHPPKVEKIIWEDINKKE 109 Query: 427 RRVAVASA 450 RR+A+ SA Sbjct: 110 RRLAIMSA 117
>RL4_PYRHO (O59420) 50S ribosomal protein L4P| Length = 255 Score = 38.9 bits (89), Expect = 0.006 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%) Frame = +1 Query: 133 VPMPHVMTAPIRPDVI------TFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTGRAVSR 294 + +P V P RPD+I ++ HR+ QP AG + E+ G G ++R Sbjct: 16 IELPRVFLTPFRPDLIRRAVIASWTHRI------QPQGRDPMAGKRRVTENIGKGHGMAR 69 Query: 295 IPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASA 450 + R+ RGGR P ++ + +N + RR+A+ SA Sbjct: 70 VERL----KTPPRYAAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSA 117
>RL4_METMP (P60846) 50S ribosomal protein L4P| Length = 252 Score = 38.5 bits (88), Expect = 0.008 Identities = 34/122 (27%), Positives = 50/122 (40%) Frame = +1 Query: 85 VSVKALEGDMATDAAGVPMPHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAE 264 V V L+G D + +P V A RPD+I QP AG++TSA+ Sbjct: 3 VKVYNLDGSEKGD---IELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAK 59 Query: 265 SWGTGRAVSRIPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVA 444 S G G +R+ R GGR P ++ + R+N + + A+A Sbjct: 60 SIGKGHGKARVRRTAQGAGAFVPQAV------GGRRAHPPKVEKILFERINRKEKLKALA 113 Query: 445 SA 450 SA Sbjct: 114 SA 115
>RL4_PYRAB (Q9V1T6) 50S ribosomal protein L4P| Length = 255 Score = 38.1 bits (87), Expect = 0.010 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%) Frame = +1 Query: 133 VPMPHVMTAPIRPDVI------TFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTGRAVSR 294 + +P V P RPD+I ++ HR+ QP AG + E+ G G ++R Sbjct: 16 IELPKVFFTPFRPDLIRRAVIASWTHRI------QPQGRDPMAGKRRVTENIGKGHGMAR 69 Query: 295 IPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASA 450 + R+ RGGR P ++ + +N + RR+A+ SA Sbjct: 70 VERL----KTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSA 117
>RL4_PYRFU (Q8TZZ9) 50S ribosomal protein L4P| Length = 255 Score = 36.6 bits (83), Expect = 0.030 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%) Frame = +1 Query: 133 VPMPHVMTAPIRPDVI------TFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTGRAVSR 294 + +P V P RPD+I ++ HR+ QP AG + E+ G G +++R Sbjct: 16 IELPKVFFTPFRPDLIRRAVIASWTHRI------QPQGRDPMAGKRRVTENIGKGHSMAR 69 Query: 295 IPRVXXXXXXXXXXXXXXNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASA 450 + R+ RGGR P ++ + +N + +R+A+ SA Sbjct: 70 VERL----KTPPRYAAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSA 117
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 29.6 bits (65), Expect = 3.6 Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Frame = -1 Query: 432 ATEADVDAXVPLAPDPGGREHASATAHVAEGSLPGAVGSTAADTRDTRHGATR------A 271 A AD P AP PG + GS+P G R R GA R A Sbjct: 160 AQPADRPIPRPPAPRPGTARPGVPRPGASPGSMPPRPGGAVGGARPPRPGAPRPGGRPGA 219 Query: 270 PGLGR 256 PG GR Sbjct: 220 PGAGR 224
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 29.6 bits (65), Expect = 3.6 Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Frame = -1 Query: 432 ATEADVDAXVPLAPDPGGREHASATAHVAEGSLPGAVGSTAADTRDTRHGATR------A 271 A AD P AP PG + GS+P G R R GA R A Sbjct: 160 AQPADRPIPRPPAPRPGTARPGVPRPGASPGSMPPRPGGAVGGARPPRPGAPRPGGRPGA 219 Query: 270 PGLGR 256 PG GR Sbjct: 220 PGAGR 224
>LEU1_MYCTU (P96420) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 644 Score = 29.3 bits (64), Expect = 4.7 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = -1 Query: 447 GGDGDAT---EADVDAXVPLAPDPGGREHASATAHVAEGSLPGAVGSTAAD--TRDTRHG 283 G D A EA V P P GR HAS +A + PG G A+D T T G Sbjct: 562 GDDAQAAAYVEASVTIASPAQPGEAGR-HASDPVTIASPAQPGEAGRHASDPVTSKTVWG 620 Query: 282 ATRAPGL 262 AP + Sbjct: 621 VGIAPSI 627
>CLPB_STRAL (Q9Z6E4) Chaperone clpB| Length = 857 Score = 28.9 bits (63), Expect = 6.2 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = -1 Query: 441 DGDATEADVDAXVPLAPDPGGREHASATAHVAEGSLPGAVGSTAADTRDTR 289 +G E VD + PGG + +A + GSLPG GST A + R Sbjct: 39 EGQDNENLVDLLAAVERRPGGGSARAPSASL--GSLPGVTGSTVAPPQPNR 87
>US02_EHV1B (P28964) Gene 68 protein| Length = 418 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%) Frame = +3 Query: 276 GSRRVAYPAC----RRRWNPPRRAGSLRQHVPWRTHVRAHP 386 G +R+ Y + W PP G L + +PW T HP Sbjct: 142 GPKRMVYAEIADEFHKSWQPPFVCGKLFETIPWTTVEHNHP 182
>US02_EHV1K (P32517) US1 protein| Length = 303 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%) Frame = +3 Query: 276 GSRRVAYPAC----RRRWNPPRRAGSLRQHVPWRTHVRAHP 386 G +R+ Y + W PP G L + +PW T HP Sbjct: 142 GPKRMVYAEIADEFHKSWQPPFVCGKLFETIPWTTVEHNHP 182 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,052,767 Number of Sequences: 219361 Number of extensions: 600867 Number of successful extensions: 2372 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 2271 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2359 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
