ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RD23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A ... 30 4.9
2KAD_SALTY (P0A1V4) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transp... 30 4.9
3KAD_SALTI (P0A1V5) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transp... 30 4.9
4KAD_ECOLI (P69441) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transp... 30 4.9
5KAD_ECOL6 (Q8FK84) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transp... 30 4.9
6KAD_ECO57 (P69442) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transp... 30 4.9
7CYAA_PODAN (Q01513) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophos... 29 6.4
8CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel al... 29 8.3
9SP3_MOUSE (O70494) Transcription factor Sp3 29 8.3

>RD23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A (hHR23A)|
          Length = 363

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 433 SPP*KKESLENFAEGSSSSMAHPPALRNRTHSPAWQSA-RLSPETAT 296
           SP    ES  +F    +S M+HPP       SP+ +SA   SPE+ +
Sbjct: 92  SPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVS 138



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>KAD_SALTY (P0A1V4) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)|
          Length = 214

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 425 LKERIAGELCRGIVVLDGAPAGIEEQDA 342
           +KERIA E CR   +LDG P  I + DA
Sbjct: 68  VKERIAQEDCRNGFLLDGFPRTIPQADA 95



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>KAD_SALTI (P0A1V5) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)|
          Length = 214

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 425 LKERIAGELCRGIVVLDGAPAGIEEQDA 342
           +KERIA E CR   +LDG P  I + DA
Sbjct: 68  VKERIAQEDCRNGFLLDGFPRTIPQADA 95



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>KAD_ECOLI (P69441) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)|
           (AK)
          Length = 214

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 425 LKERIAGELCRGIVVLDGAPAGIEEQDA 342
           +KERIA E CR   +LDG P  I + DA
Sbjct: 68  VKERIAQEDCRNGFLLDGFPRTIPQADA 95



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>KAD_ECOL6 (Q8FK84) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)|
          Length = 214

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 425 LKERIAGELCRGIVVLDGAPAGIEEQDA 342
           +KERIA E CR   +LDG P  I + DA
Sbjct: 68  VKERIAQEDCRNGFLLDGFPRTIPQADA 95



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>KAD_ECO57 (P69442) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)|
           (AK)
          Length = 214

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 425 LKERIAGELCRGIVVLDGAPAGIEEQDA 342
           +KERIA E CR   +LDG P  I + DA
Sbjct: 68  VKERIAQEDCRNGFLLDGFPRTIPQADA 95



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>CYAA_PODAN (Q01513) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 2145

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 22/92 (23%), Positives = 30/92 (32%)
 Frame = -1

Query: 472 VAPWTMLSEVSIDSPP*KKESLENFAEGSSSSMAHPPALRNRTHSPAWQSARLSPETATR 293
           +APW   +     S P       +  +  S S    P LRN T  P+  +       +T 
Sbjct: 149 IAPWMAAAPTPASSGPLPTSFFNDSTDNLSLSSQTSPGLRNATARPSQTTT-----GSTE 203

Query: 292 GPETRIMXXXXXXXXXXXXSVLESQACAGSGA 197
            PET               +   SQ    SGA
Sbjct: 204 SPETLYFTDERRPSIASITTTASSQGSRASGA 235



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>CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel alpha-1G subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.1)
            (Cav3.1c) (NBR13)
          Length = 2377

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -1

Query: 430  PP*KKESLENFAE-GSSSSMAHPPALRNRTHSP-----AWQSARLSPETATRGPETR 278
            P  ++ S    AE G++  M  PP+ R+  HSP     +W S R S  +  R P  +
Sbjct: 1064 PASRRTSSSGSAEPGAAHEMKSPPSARSSPHSPWSAASSWTSRRSSRNSLGRAPSLK 1120



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>SP3_MOUSE (O70494) Transcription factor Sp3|
          Length = 783

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 344 AFTCVAVGPPQPGDGDARA 288
           A TC  +GPP PGD D  A
Sbjct: 62  AATCSKIGPPSPGDDDEEA 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,001,998
Number of Sequences: 219361
Number of extensions: 699795
Number of successful extensions: 2707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2707
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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