Clone Information

BLAST Search Result

Clone Name	bastl29c04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_185803.1\| Oryza sativa (japonica cultivar-group), predic...	192	7e-46
2	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	192	7e-46
3	dbj\|AP003044.1\| Oryza sativa (japonica cultivar-group) genomic D...	192	7e-46
4	dbj\|AK110058.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	192	7e-46
5	ref\|XM_467581.1\| Oryza sativa (japonica cultivar-group), mRNA	82	2e-12
6	ref\|XM_506951.1\| PREDICTED Oryza sativa (japonica cultivar-group...	82	2e-12
7	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	82	2e-12
8	dbj\|AP005284.3\| Oryza sativa (japonica cultivar-group) genomic D...	82	2e-12
9	dbj\|AK120552.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	82	2e-12
10	dbj\|AK065834.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	82	2e-12
11	gb\|AC022701.6\| Homo sapiens chromosome 18, clone RP11-9H16, comp...	44	0.40
12	gb\|AC080051.6\| Homo sapiens chromosome 18, clone RP11-603M14, co...	44	0.40
13	gb\|AC146236.3\| Pan troglodytes BAC clone RP43-27L10 from 7, comp...	42	1.6
14	ref\|XM_806034.1\| Trypanosoma cruzi strain CL Brener hypothetical...	42	1.6
15	gb\|AC073992.3\| Homo sapiens BAC clone RP11-663K21 from 7, comple...	42	1.6
16	emb\|BX842568.3\| Human DNA sequence from clone RP11-31H15 on chro...	42	1.6
17	gb\|AC069356.6\| Homo sapiens chromosome 18, clone RP11-575O17, co...	42	1.6
18	gb\|AC006924.3\|AC006924 Homo sapiens, clone hRPK.32_A_1, complete...	42	1.6
19	gb\|AC160127.2\| Mus musculus BAC clone RP23-295O2 from chromosome...	40	6.3
20	gb\|AC164542.2\| Mus musculus chromosome 3, clone RP23-391J12, com...	40	6.3
21	gb\|AC121568.3\| Mus musculus BAC clone RP23-226F18 from 15, compl...	40	6.3
22	emb\|AL353744.18\| Human DNA sequence from clone RP13-100A9 on chr...	40	6.3
23	ref\|XM_785505.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	6.3
24	gb\|AC026360.17\| Homo sapiens 3 BAC RP11-392B9 (Roswell Park Canc...	40	6.3
25	emb\|AL929518.16\| Zebrafish DNA sequence from clone CH211-163F10 ...	40	6.3

>ref|NM_185803.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2919

 Score =  192 bits (97), Expect = 7e-46
 Identities = 187/217 (86%)
 Strand = Plus / Plus

                                                                       
Query: 209 gtgacatgccaaggttggtggacttcctgcagggaatgtaccatgagtctcatgagtttg 268
           |||||||||||||| ||||||||||||||||||||||||||||||| || |||||  | |
Sbjct: 623 gtgacatgccaaggctggtggacttcctgcagggaatgtaccatgaatcacatgatatcg 682

                                                                       
Query: 269 gtgggcagtcgttcagttcactccctgaagtcgcagagtatgttgagccgctgtatgatt 328
           |||  || || |||| ||| ||||||||||| ||||| ||||| |||||  | |||||||
Sbjct: 683 gtgcacattcattcaattcgctccctgaagttgcagaatatgtcgagccattatatgatt 742

                                                                       
Query: 329 ctttcttctgcccactgacaaataaggtcatggttgatccagtgactaccgaaagcggag 388
           | |||||||| ||| ||||||| ||||||||||||||||||||||| || ||||| || |
Sbjct: 743 cgttcttctgtccattgacaaacaaggtcatggttgatccagtgacaacagaaagtggtg 802

                                                
Query: 389 taacatatgacaggagaaccattgaggagtactttga 425
           | |||||||| |||| | |||||||||||||||||||
Sbjct: 803 tgacatatgataggaaagccattgaggagtactttga 839



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaagaacatcggccatgagctcagcaggatacctgcttcagcatttgggagcaacagg 60
           ||||||||||| || ||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 415 ataaagaacattgggcatgagctcagcaggatacctgcttcaacatttggtagcagcagg 474

            
Query: 61  t 61
           |
Sbjct: 475 t 475

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  192 bits (97), Expect = 7e-46
 Identities = 187/217 (86%)
 Strand = Plus / Minus

                                                                           
Query: 209     gtgacatgccaaggttggtggacttcctgcagggaatgtaccatgagtctcatgagtttg 268
               |||||||||||||| ||||||||||||||||||||||||||||||| || |||||  | |
Sbjct: 9382388 gtgacatgccaaggctggtggacttcctgcagggaatgtaccatgaatcacatgatatcg 9382329

                                                                           
Query: 269     gtgggcagtcgttcagttcactccctgaagtcgcagagtatgttgagccgctgtatgatt 328
               |||  || || |||| ||| ||||||||||| ||||| ||||| |||||  | |||||||
Sbjct: 9382328 gtgcacattcattcaattcgctccctgaagttgcagaatatgtcgagccattatatgatt 9382269

                                                                           
Query: 329     ctttcttctgcccactgacaaataaggtcatggttgatccagtgactaccgaaagcggag 388
               | |||||||| ||| ||||||| ||||||||||||||||||||||| || ||||| || |
Sbjct: 9382268 cgttcttctgtccattgacaaacaaggtcatggttgatccagtgacaacagaaagtggtg 9382209

                                                    
Query: 389     taacatatgacaggagaaccattgaggagtactttga 425
               | |||||||| |||| | |||||||||||||||||||
Sbjct: 9382208 tgacatatgataggaaagccattgaggagtactttga 9382172



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                           
Query: 1       ataaagaacatcggccatgagctcagcaggatacctgcttcagcatttgggagcaacagg 60
               ||||||||||| || ||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 9382596 ataaagaacattgggcatgagctcagcaggatacctgcttcaacatttggtagcagcagg 9382537

                
Query: 61      t 61
               |
Sbjct: 9382536 t 9382536

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>dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0038C05
          Length = 152941

 Score =  192 bits (97), Expect = 7e-46
 Identities = 187/217 (86%)
 Strand = Plus / Minus

                                                                          
Query: 209    gtgacatgccaaggttggtggacttcctgcagggaatgtaccatgagtctcatgagtttg 268
              |||||||||||||| ||||||||||||||||||||||||||||||| || |||||  | |
Sbjct: 110798 gtgacatgccaaggctggtggacttcctgcagggaatgtaccatgaatcacatgatatcg 110739

                                                                          
Query: 269    gtgggcagtcgttcagttcactccctgaagtcgcagagtatgttgagccgctgtatgatt 328
              |||  || || |||| ||| ||||||||||| ||||| ||||| |||||  | |||||||
Sbjct: 110738 gtgcacattcattcaattcgctccctgaagttgcagaatatgtcgagccattatatgatt 110679

                                                                          
Query: 329    ctttcttctgcccactgacaaataaggtcatggttgatccagtgactaccgaaagcggag 388
              | |||||||| ||| ||||||| ||||||||||||||||||||||| || ||||| || |
Sbjct: 110678 cgttcttctgtccattgacaaacaaggtcatggttgatccagtgacaacagaaagtggtg 110619

                                                   
Query: 389    taacatatgacaggagaaccattgaggagtactttga 425
              | |||||||| |||| | |||||||||||||||||||
Sbjct: 110618 tgacatatgataggaaagccattgaggagtactttga 110582



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                          
Query: 1      ataaagaacatcggccatgagctcagcaggatacctgcttcagcatttgggagcaacagg 60
              ||||||||||| || ||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 111006 ataaagaacattgggcatgagctcagcaggatacctgcttcaacatttggtagcagcagg 110947

               
Query: 61     t 61
              |
Sbjct: 110946 t 110946

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>dbj|AK110058.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-D07, full
           insert sequence
          Length = 3271

 Score =  192 bits (97), Expect = 7e-46
 Identities = 187/217 (86%)
 Strand = Plus / Plus

                                                                       
Query: 209 gtgacatgccaaggttggtggacttcctgcagggaatgtaccatgagtctcatgagtttg 268
           |||||||||||||| ||||||||||||||||||||||||||||||| || |||||  | |
Sbjct: 381 gtgacatgccaaggctggtggacttcctgcagggaatgtaccatgaatcacatgatatcg 440

                                                                       
Query: 269 gtgggcagtcgttcagttcactccctgaagtcgcagagtatgttgagccgctgtatgatt 328
           |||  || || |||| ||| ||||||||||||||||| ||||| |||||  | |||||||
Sbjct: 441 gtgcacattcattcaattcgctccctgaagtcgcagaatatgtcgagccattatatgatt 500

                                                                       
Query: 329 ctttcttctgcccactgacaaataaggtcatggttgatccagtgactaccgaaagcggag 388
           | |||||||| ||| ||||||| ||||||||||||||||||||||| || | ||| || |
Sbjct: 501 cgttcttctgtccattgacaaacaaggtcatggttgatccagtgacaacaggaagtggtg 560

                                                
Query: 389 taacatatgacaggagaaccattgaggagtactttga 425
           | |||||||| |||| | |||||||||||||||||||
Sbjct: 561 tgacatatgataggaaagccattgaggagtactttga 597



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaagaacatcggccatgagctcagcaggatacctgcttcagcatttgggagcaacagg 60
           ||||||||||| || ||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 173 ataaagaacattgggcatgagctcagcaggatacctgcttcagcatttggtagcagcagg 232

            
Query: 61  t 61
           |
Sbjct: 233 t 233

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>ref|XM_467581.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3450

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 164/205 (80%)
 Strand = Plus / Plus

                                                                       
Query: 212 acatgccaaggttggtggacttcctgcagggaatgtaccatgagtctcatgagtttggtg 271
           ||||||||||| | ||||| || |||||||||||||||||||| ||  |||| ||||| |
Sbjct: 734 acatgccaaggctagtggaatttctgcagggaatgtaccatgaatccgatgaatttggag 793

                                                                       
Query: 272 ggcagtcgttcagttcactccctgaagtcgcagagtatgttgagccgctgtatgattctt 331
           | || | |||||| || ||||| || ||| |||| ||  |||| || ||||||||| |  
Sbjct: 794 gccacttgttcagctctctcccagaggtctcagaatacattgaaccactgtatgatgcac 853

                                                                       
Query: 332 tcttctgcccactgacaaataaggtcatggttgatccagtgactaccgaaagcggagtaa 391
           ||||||| |||||||||||| |||| |||  |||||| |||   || || ||||| || |
Sbjct: 854 tcttctgtccactgacaaatcaggtaatgactgatcctgtgttaacggagagcggtgtga 913

                                    
Query: 392 catatgacaggagaaccattgagga 416
           ||||||| |||||| |||| |||||
Sbjct: 914 catatgaaaggagagccatagagga 938

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>ref|XM_506951.1| PREDICTED Oryza sativa (japonica cultivar-group), B1121A12.27 mRNA
          Length = 4024

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 164/205 (80%)
 Strand = Plus / Plus

                                                                        
Query: 212  acatgccaaggttggtggacttcctgcagggaatgtaccatgagtctcatgagtttggtg 271
            ||||||||||| | ||||| || |||||||||||||||||||| ||  |||| ||||| |
Sbjct: 1365 acatgccaaggctagtggaatttctgcagggaatgtaccatgaatccgatgaatttggag 1424

                                                                        
Query: 272  ggcagtcgttcagttcactccctgaagtcgcagagtatgttgagccgctgtatgattctt 331
            | || | |||||| || ||||| || ||| |||| ||  |||| || ||||||||| |  
Sbjct: 1425 gccacttgttcagctctctcccagaggtctcagaatacattgaaccactgtatgatgcac 1484

                                                                        
Query: 332  tcttctgcccactgacaaataaggtcatggttgatccagtgactaccgaaagcggagtaa 391
            ||||||| |||||||||||| |||| |||  |||||| |||   || || ||||| || |
Sbjct: 1485 tcttctgtccactgacaaatcaggtaatgactgatcctgtgttaacggagagcggtgtga 1544

                                     
Query: 392  catatgacaggagaaccattgagga 416
            ||||||| |||||| |||| |||||
Sbjct: 1545 catatgaaaggagagccatagagga 1569

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 164/205 (80%)
 Strand = Plus / Plus

                                                                            
Query: 212      acatgccaaggttggtggacttcctgcagggaatgtaccatgagtctcatgagtttggtg 271
                ||||||||||| | ||||| || |||||||||||||||||||| ||  |||| ||||| |
Sbjct: 30286936 acatgccaaggctagtggaatttctgcagggaatgtaccatgaatccgatgaatttggag 30286995

                                                                            
Query: 272      ggcagtcgttcagttcactccctgaagtcgcagagtatgttgagccgctgtatgattctt 331
                | || | |||||| || ||||| || ||| |||| ||  |||| || ||||||||| |  
Sbjct: 30286996 gccacttgttcagctctctcccagaggtctcagaatacattgaaccactgtatgatgcac 30287055

                                                                            
Query: 332      tcttctgcccactgacaaataaggtcatggttgatccagtgactaccgaaagcggagtaa 391
                ||||||| |||||||||||| |||| |||  |||||| |||   || || ||||| || |
Sbjct: 30287056 tcttctgtccactgacaaatcaggtaatgactgatcctgtgttaacggagagcggtgtga 30287115

                                         
Query: 392      catatgacaggagaaccattgagga 416
                ||||||| |||||| |||| |||||
Sbjct: 30287116 catatgaaaggagagccatagagga 30287140

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>dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1121A12
          Length = 138796

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 164/205 (80%)
 Strand = Plus / Plus

                                                                         
Query: 212   acatgccaaggttggtggacttcctgcagggaatgtaccatgagtctcatgagtttggtg 271
             ||||||||||| | ||||| || |||||||||||||||||||| ||  |||| ||||| |
Sbjct: 87853 acatgccaaggctagtggaatttctgcagggaatgtaccatgaatccgatgaatttggag 87912

                                                                         
Query: 272   ggcagtcgttcagttcactccctgaagtcgcagagtatgttgagccgctgtatgattctt 331
             | || | |||||| || ||||| || ||| |||| ||  |||| || ||||||||| |  
Sbjct: 87913 gccacttgttcagctctctcccagaggtctcagaatacattgaaccactgtatgatgcac 87972

                                                                         
Query: 332   tcttctgcccactgacaaataaggtcatggttgatccagtgactaccgaaagcggagtaa 391
             ||||||| |||||||||||| |||| |||  |||||| |||   || || ||||| || |
Sbjct: 87973 tcttctgtccactgacaaatcaggtaatgactgatcctgtgttaacggagagcggtgtga 88032

                                      
Query: 392   catatgacaggagaaccattgagga 416
             ||||||| |||||| |||| |||||
Sbjct: 88033 catatgaaaggagagccatagagga 88057

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>dbj|AK120552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130C13, full
           insert sequence
          Length = 3449

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 164/205 (80%)
 Strand = Plus / Plus

                                                                       
Query: 212 acatgccaaggttggtggacttcctgcagggaatgtaccatgagtctcatgagtttggtg 271
           ||||||||||| | ||||| || |||||||||||||||||||| ||  |||| ||||| |
Sbjct: 734 acatgccaaggctagtggaatttctgcagggaatgtaccatgaatccgatgaatttggag 793

                                                                       
Query: 272 ggcagtcgttcagttcactccctgaagtcgcagagtatgttgagccgctgtatgattctt 331
           | || | |||||| || ||||| || ||| |||| ||  |||| || ||||||||| |  
Sbjct: 794 gccacttgttcagctctctcccagaggtctcagaatacattgaaccactgtatgatgcac 853

                                                                       
Query: 332 tcttctgcccactgacaaataaggtcatggttgatccagtgactaccgaaagcggagtaa 391
           ||||||| |||||||||||| |||| |||  |||||| |||   || || ||||| || |
Sbjct: 854 tcttctgtccactgacaaatcaggtaatgactgatcctgtgttaacggagagcggtgtga 913

                                    
Query: 392 catatgacaggagaaccattgagga 416
           ||||||| |||||| |||| |||||
Sbjct: 914 catatgaaaggagagccatagagga 938

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>dbj|AK065834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036J09, full
            insert sequence
          Length = 4024

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 164/205 (80%)
 Strand = Plus / Plus

                                                                        
Query: 212  acatgccaaggttggtggacttcctgcagggaatgtaccatgagtctcatgagtttggtg 271
            ||||||||||| | ||||| || |||||||||||||||||||| ||  |||| ||||| |
Sbjct: 1365 acatgccaaggctagtggaatttctgcagggaatgtaccatgaatccgatgaatttggag 1424

                                                                        
Query: 272  ggcagtcgttcagttcactccctgaagtcgcagagtatgttgagccgctgtatgattctt 331
            | || | |||||| || ||||| || ||| |||| ||  |||| || ||||||||| |  
Sbjct: 1425 gccacttgttcagctctctcccagaggtctcagaatacattgaaccactgtatgatgcac 1484

                                                                        
Query: 332  tcttctgcccactgacaaataaggtcatggttgatccagtgactaccgaaagcggagtaa 391
            ||||||| |||||||||||| |||| |||  |||||| |||   || || ||||| || |
Sbjct: 1485 tcttctgtccactgacaaatcaggtaatgactgatcctgtgttaacggagagcggtgtga 1544

                                     
Query: 392  catatgacaggagaaccattgagga 416
            ||||||| |||||| |||| |||||
Sbjct: 1545 catatgaaaggagagccatagagga 1569

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>gb|AC022701.6| Homo sapiens chromosome 18, clone RP11-9H16, complete sequence
          Length = 173941

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 331   ttcttctgcccactgacaaata 352
             ||||||||||||||||||||||
Sbjct: 94591 ttcttctgcccactgacaaata 94570

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>gb|AC080051.6| Homo sapiens chromosome 18, clone RP11-603M14, complete sequence
          Length = 168063

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 331    ttcttctgcccactgacaaata 352
              ||||||||||||||||||||||
Sbjct: 102226 ttcttctgcccactgacaaata 102247

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>gb|AC146236.3| Pan troglodytes BAC clone RP43-27L10 from 7, complete sequence
          Length = 184346

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     acctgcttcagcatttgggag 53
              |||||||||||||||||||||
Sbjct: 166086 acctgcttcagcatttgggag 166066

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>ref|XM_806034.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053504045.20) partial mRNA
          Length = 1395

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 407 ccattgaggagtactttgaca 427
           |||||||||||||||||||||
Sbjct: 665 ccattgaggagtactttgaca 685

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>gb|AC073992.3| Homo sapiens BAC clone RP11-663K21 from 7, complete sequence
          Length = 20521

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 33   acctgcttcagcatttgggag 53
            |||||||||||||||||||||
Sbjct: 8428 acctgcttcagcatttgggag 8408

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>emb|BX842568.3| Human DNA sequence from clone RP11-31H15 on chromosome X Contains the
              gene for a novel protein, a transmembrane 4 superfamily
              member 10 (TM4SF10) pseudogene, a transcription factor Dp-1
              (TFDP1) pseudogene, a novel pseudogene and two ferritin,
              heavy polypeptide-like 17 (FTHL17) pseudogenes, complete
              sequence
          Length = 161540

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 324    tgattctttcttctgcccact 344
              |||||||||||||||||||||
Sbjct: 150573 tgattctttcttctgcccact 150553

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>gb|AC069356.6| Homo sapiens chromosome 18, clone RP11-575O17, complete sequence
          Length = 161480

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   tggtggacttcctgcagggaa 244
             |||||||||||||||||||||
Sbjct: 84636 tggtggacttcctgcagggaa 84656

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>gb|AC006924.3|AC006924 Homo sapiens, clone hRPK.32_A_1, complete sequence
          Length = 165633

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 324   tgattctttcttctgcccact 344
             |||||||||||||||||||||
Sbjct: 24364 tgattctttcttctgcccact 24344

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>gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome 9, complete sequence
          Length = 205289

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    atacctgcttcagcatttgg 50
             ||||||||||||||||||||
Sbjct: 57108 atacctgcttcagcatttgg 57089

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>gb|AC164542.2| Mus musculus chromosome 3, clone RP23-391J12, complete sequence
          Length = 202319

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    gatccagtgactaccgaaag 383
              ||||||||||||||||||||
Sbjct: 142307 gatccagtgactaccgaaag 142326

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>gb|AC121568.3| Mus musculus BAC clone RP23-226F18 from 15, complete sequence
          Length = 207297

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 38     cttcagcatttgggagcaacaggt 61
              ||||||||||||||||||| ||||
Sbjct: 118855 cttcagcatttgggagcaaaaggt 118878

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>emb|AL353744.18| Human DNA sequence from clone RP13-100A9 on chromosome Xq11.2-13.1
             Contains a GrpE-like 2 mitochondrial (E. coli) pseudogene
             and a novel pseudogene, complete sequence
          Length = 131070

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   tggtggacttcctgcaggga 243
             ||||||||||||||||||||
Sbjct: 42458 tggtggacttcctgcaggga 42477

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>ref|XM_785505.1| PREDICTED: Strongylocentrotus purpuratus similar to helentron 3
            helitron-like transposon replicase/helicase/endonuclease
            (LOC585687), mRNA
          Length = 5310

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 435  ggatgattctgaacatgtga 454
            ||||||||||||||||||||
Sbjct: 1212 ggatgattctgaacatgtga 1231

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>gb|AC026360.17| Homo sapiens 3 BAC RP11-392B9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 77304

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    cagcatttgggagcaacagg 60
             ||||||||||||||||||||
Sbjct: 56793 cagcatttgggagcaacagg 56774

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>emb|AL929518.16| Zebrafish DNA sequence from clone CH211-163F10 in linkage group 2,
             complete sequence
          Length = 162473

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   gatgattctgaacatgtgat 455
             ||||||||||||||||||||
Sbjct: 91990 gatgattctgaacatgtgat 91971


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,601,501
Number of Sequences: 3902068
Number of extensions: 3601501
Number of successful extensions: 64671
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64584
Number of HSP's gapped (non-prelim): 83
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result