ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl29c02 |
|---|---|
| Clone Library Name | barley_pub |
>XPB1_ARATH (Q38861) DNA repair helicase XPB1 (EC 3.6.1.-) (XPB homolog 1)| (ERCC3 homolog 1) (RAD25 homolog 1) (AtXPB1) (Protein araXPB) Length = 767 Score = 172 bits (435), Expect = 5e-43 Identities = 83/87 (95%), Positives = 84/87 (96%) Frame = +2 Query: 191 EVKKRDFTKLELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHE 370 E KKRDFTKLELKPDH NRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHE Sbjct: 46 EEKKRDFTKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHE 105 Query: 371 YNLTPHSLYAAVSVGLETNTIISVLSK 451 YNLTPHSLYAAVSVGLET TIISVL+K Sbjct: 106 YNLTPHSLYAAVSVGLETETIISVLNK 132
>XPB2_ARATH (Q9FUG4) DNA repair helicase XPB2 (EC 3.6.1.-) (XPB homolog 2)| (ERCC3 homolog 2) (RAD25 homolog 2) (AtXPB2) Length = 766 Score = 167 bits (423), Expect = 1e-41 Identities = 80/87 (91%), Positives = 83/87 (95%) Frame = +2 Query: 191 EVKKRDFTKLELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHE 370 E K+RDFT LELKPDH NRPLWACADG+IFLETFSPLYKQAYDFLIAIAEPVCRPESMHE Sbjct: 46 EEKRRDFTDLELKPDHGNRPLWACADGKIFLETFSPLYKQAYDFLIAIAEPVCRPESMHE 105 Query: 371 YNLTPHSLYAAVSVGLETNTIISVLSK 451 YNLTPHSLYAAVSVGLET TIISVL+K Sbjct: 106 YNLTPHSLYAAVSVGLETETIISVLNK 132
>ERCC3_DROME (Q02870) DNA excision repair protein haywire (EC 3.6.1.-)| (ATP-dependent DNA helicase hay) (ERCC-3 homolog protein) Length = 798 Score = 115 bits (289), Expect = 4e-26 Identities = 50/80 (62%), Positives = 67/80 (83%) Frame = +2 Query: 212 TKLELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHS 391 ++++L+PDH NRPLW +G +FLE+FSP+YK A+DFLIAI+EPVCRPE +HEY LT +S Sbjct: 73 SQMQLRPDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYS 132 Query: 392 LYAAVSVGLETNTIISVLSK 451 LYAAVSVGL+T+ I+ L + Sbjct: 133 LYAAVSVGLQTHDIVEYLKR 152
>RAD25_YEAST (Q00578) DNA repair helicase RAD25 (EC 3.6.1.-) (General| transcription and DNA repair factor IIH subunit RAD25) (TFIIH subunit RAD25) Length = 843 Score = 110 bits (276), Expect = 1e-24 Identities = 53/86 (61%), Positives = 67/86 (77%), Gaps = 1/86 (1%) Frame = +2 Query: 197 KKRDFTKLELKPDHVNRPLWAC-ADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEY 373 + DF+ L L+PDH +RPLW +DGRI LE+FSPL +QA DFL+ IAEP+ RP +HEY Sbjct: 114 RSHDFSYLRLRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEY 173 Query: 374 NLTPHSLYAAVSVGLETNTIISVLSK 451 +T +SLYAAVSVGLET+ IISVL + Sbjct: 174 KITAYSLYAAVSVGLETDDIISVLDR 199
>ERCC3_MACFA (Q60HG1) TFIIH basal transcription factor complex helicase XPB| subunit (EC 3.6.1.-) (Basic transcription factor 2 89 kDa subunit) (BTF2-p89) (TFIIH 89 kDa subunit) (DNA-repair protein complementing XP-B cells) (Xeroderma pigmentosum group B-c Length = 782 Score = 109 bits (273), Expect = 3e-24 Identities = 51/79 (64%), Positives = 60/79 (75%) Frame = +2 Query: 215 KLELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSL 394 ++ LK DH +RPLW DG IFLE FSP+YK A DFL+AIAEPVCRP +HEY LT +SL Sbjct: 64 QMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSL 123 Query: 395 YAAVSVGLETNTIISVLSK 451 YAAVSVGL+T+ I L K Sbjct: 124 YAAVSVGLQTSDITEYLRK 142
>ERCC3_HUMAN (P19447) TFIIH basal transcription factor complex helicase XPB| subunit (EC 3.6.1.-) (Basic transcription factor 2 89 kDa subunit) (BTF2-p89) (TFIIH 89 kDa subunit) (DNA-repair protein complementing XP-B cells) (Xeroderma pigmentosum group B c Length = 782 Score = 109 bits (273), Expect = 3e-24 Identities = 51/79 (64%), Positives = 60/79 (75%) Frame = +2 Query: 215 KLELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSL 394 ++ LK DH +RPLW DG IFLE FSP+YK A DFL+AIAEPVCRP +HEY LT +SL Sbjct: 64 QMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSL 123 Query: 395 YAAVSVGLETNTIISVLSK 451 YAAVSVGL+T+ I L K Sbjct: 124 YAAVSVGLQTSDITEYLRK 142
>ERCC3_MOUSE (P49135) TFIIH basal transcription factor complex helicase XPB| subunit (EC 3.6.1.-) (Basic transcription factor 2 89 kDa subunit) (BTF2-p89) (TFIIH 89 kDa subunit) (DNA-repair protein complementing XP-B cells) (Xeroderma pigmentosum group B c Length = 783 Score = 109 bits (272), Expect = 4e-24 Identities = 51/79 (64%), Positives = 60/79 (75%) Frame = +2 Query: 215 KLELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSL 394 ++ LK DH +RPLW DG IFLE FSP+YK A DFL+AIAEPVCRP +HEY LT +SL Sbjct: 64 QMPLKGDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSL 123 Query: 395 YAAVSVGLETNTIISVLSK 451 YAAVSVGL+T+ I L K Sbjct: 124 YAAVSVGLQTSDITEYLRK 142
>ERCC3_SCHPO (O13768) Probable DNA repair helicase ercc3 (EC 3.6.1.-)| Length = 804 Score = 95.5 bits (236), Expect = 5e-20 Identities = 51/86 (59%), Positives = 62/86 (72%), Gaps = 2/86 (2%) Frame = +2 Query: 200 KRDFTKL-ELKPDHVNRPLWACA-DGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEY 373 + DF+ L LK DH RPLW DGRI LE FSPL +QA DFL+ I+EPV RP +HEY Sbjct: 73 QNDFSNLLGLKLDHTARPLWINPIDGRIILEAFSPLAEQAIDFLVTISEPVSRPAFIHEY 132 Query: 374 NLTPHSLYAAVSVGLETNTIISVLSK 451 +T +SLYAAVSVGL+T II+VL + Sbjct: 133 RITAYSLYAAVSVGLKTEDIIAVLDR 158
>ZCH14_HUMAN (Q8WYQ9) Zinc finger CCHC domain-containing protein 14 (BDG-29)| Length = 949 Score = 30.8 bits (68), Expect = 1.6 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 246 GRCGRAQTAASSSRPSRLFTSRPTISSLPSPN 341 G C + TA+ SS PS F + T+ S P+P+ Sbjct: 699 GFCANSNTASPSSHPSTSFANMATLPSCPAPS 730
>LGRA_BREPA (Q70LM7) Linear gramicidin synthetase subunit A [Includes:| ATP-dependent valine/leucine adenylase (Val/LeuA) (Valine/leucine activase); ATP-dependent glycine adenylase (GlyA) (Glycine activase)] Length = 2273 Score = 29.3 bits (64), Expect = 4.7 Identities = 17/49 (34%), Positives = 20/49 (40%) Frame = +2 Query: 263 ADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS 409 A RI LE F YKQ A EP+ P H Y L+ A + Sbjct: 1945 ASWRIILEDFQTAYKQK-----AAGEPIALPNKTHSYQSWAEELHNAAN 1988
>TR19L_MOUSE (Q8BX43) Tumor necrosis factor receptor superfamily member 19L| precursor Length = 436 Score = 28.9 bits (63), Expect = 6.2 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -1 Query: 352 PAYRFGDGNEEIVGLLVKRREGLEEDAAVCARPQRPVH 239 PAYR D NE+ +G+LV+ +E+AA + H Sbjct: 219 PAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYH 256
>TR19L_HUMAN (Q969Z4) Tumor necrosis factor receptor superfamily member 19L| precursor (Receptor expressed in lymphoid tissues) Length = 430 Score = 28.9 bits (63), Expect = 6.2 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -1 Query: 352 PAYRFGDGNEEIVGLLVKRREGLEEDAAVCARPQRPVH 239 PAYR D NE+ +G+LV+ +E+AA + H Sbjct: 212 PAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYH 249
>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/27 (59%), Positives = 17/27 (62%) Frame = -3 Query: 383 ALDCIHA*ILACIQVRRWQ*GNRRPAC 303 AL C+HA LACI RRW G RP C Sbjct: 26 ALPCLHAFCLACI--RRWLEG--RPTC 48
>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/27 (59%), Positives = 17/27 (62%) Frame = -3 Query: 383 ALDCIHA*ILACIQVRRWQ*GNRRPAC 303 AL C+HA LACI RRW G RP C Sbjct: 26 ALPCLHAFCLACI--RRWLEG--RPTC 48 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,211,630 Number of Sequences: 219361 Number of extensions: 815659 Number of successful extensions: 2055 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2014 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2051 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
