ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl29c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 297 2e-77
2ref|NM_192145.1| Oryza sativa (japonica cultivar-group), predic... 291 1e-75
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 139 9e-30
4dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic D... 139 9e-30
5dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
6ref|NM_194793.1| Oryza sativa (japonica cultivar-group) putative... 42 1.5
7gb|AC140275.3| Mus musculus BAC clone RP24-312F4 from chromosome... 42 1.5
8gb|AC116128.15| Mus musculus chromosome 19, clone RP23-95H3, com... 42 1.5
9gb|AC099600.5| Mus musculus chromosome 15, clone RP23-236P20, co... 42 1.5
10gb|AC157584.6| Mus musculus chromosome 15, clone RP24-304L10, co... 42 1.5
11emb|AL008631.1|HS292F10 Human DNA sequence from clone RP1-292F10... 42 1.5
12emb|Z18946.1|MLCGA Mycobacteriophage L5 complete genome 42 1.5
13emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete ... 42 1.5
14gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, c... 42 1.5
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
18emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.5
19dbj|AK067458.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
20emb|AL133501.6|CNS01DV9 Human chromosome 14 DNA sequence BAC R-3... 42 1.5
21gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
22emb|AL162632.4|CNS01RHX Human chromosome 14 DNA sequence BAC R-4... 42 1.5
23gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g... 40 6.1
24ref|NM_184799.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
25gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.1
26ref|NM_001004357.1| Mus musculus contactin associated protein-li... 40 6.1
27gb|AE009266.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 6.1
28gb|AE008345.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 6.1
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.1
30gb|BC064467.1| Mus musculus contactin associated protein-like 2,... 40 6.1
31gb|AC125401.4| Mus musculus BAC clone RP24-538H16 from chromosom... 40 6.1
32gb|AC163637.4| Mus musculus BAC clone RP23-186O3 from chromosome... 40 6.1
33gb|BC108392.1| Mus musculus ribonucleoprotein, PTB-binding 1, mR... 40 6.1
34gb|BC058271.1| Mus musculus ribonucleoprotein, PTB-binding 1, mR... 40 6.1
35gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 6.1
36gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.1
37ref|NM_027911.3| Mus musculus ribonucleoprotein, PTB-binding 1 (... 40 6.1
38emb|Z68128.1|HSC1GENE H.sapiens C1 gene 40 6.1
39gb|U52112.2| Homo sapiens chromosome X clone QLL-D9139, Qc-7G12,... 40 6.1
40gb|AY275472.1| Mus musculus RAVER1 mRNA, complete cds 40 6.1
41gb|AE005681.1| Caulobacter crescentus CB15 section 7 of 359 of t... 40 6.1
42ref|NM_136727.2| Drosophila melanogaster CAP CG18408-RA, transcr... 40 6.1
43dbj|AK138596.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 40 6.1
44gb|AC090354.8| Homo sapiens chromosome 18, clone RP11-735P10, co... 40 6.1
45dbj|AK168436.1| Mus musculus 17 days embryo kidney cDNA, RIKEN f... 40 6.1
46gb|AC007417.5| Drosophila melanogaster, chromosome 2R, region 47... 40 6.1
47dbj|AK039928.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 40 6.1
48dbj|AK084478.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 40 6.1
49dbj|AK051444.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 6.1
50dbj|AK079191.1| Mus musculus adult male urinary bladder cDNA, RI... 40 6.1
51dbj|AK004919.1| Mus musculus adult male liver cDNA, RIKEN full-l... 40 6.1
52dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
53gb|AC159138.6| Mus musculus BAC RP23-315F23 (Roswell Park Cance... 40 6.1
54gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genom... 40 6.1
55ref|XM_575456.1| PREDICTED: Rattus norvegicus similar to contact... 40 6.1
56dbj|AK129232.1| Mus musculus mRNA for mKIAA0868 protein 40 6.1
57dbj|AK069458.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
58gb|AE003830.3| Drosophila melanogaster chromosome 2R, section 20... 40 6.1
59gb|BC083865.1| Rattus norvegicus RAVER1 homolog (human), mRNA (c... 40 6.1
60gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 6.1
61dbj|AB053478.1| Drosophila melanogaster dcp mRNA for DCAPL1, com... 40 6.1
62ref|NM_001013939.1| Rattus norvegicus RAVER1 homolog (human) (Ra... 40 6.1 
>dbj|AK103297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125B04, full
           insert sequence
          Length = 2909

 Score =  297 bits (150), Expect = 2e-77
 Identities = 338/401 (84%), Gaps = 6/401 (1%)
 Strand = Plus / Plus

                                                                       
Query: 47  gccatggccggcggcgacggcgatcgcgcccgtgcgccgaagcggtacaagtcctcggcg 106
           |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct: 108 gccatggccggcggcgacggcgatcgtgcccgcgcgccgaagcggcacaagtcctcggcg 167

                                                                       
Query: 107 ccatcgaaggcggctctggtggacgagaccgccgagatgaactacgccgacgacttcgat 166
           || |||| | || ||      ||||||||||||||  || ||||| |||| ||| |||||
Sbjct: 168 ccgtcgaggtcgact------gacgagaccgccgaactggactacaccgatgacgtcgat 221

                                                                       
Query: 167 gacgatgcccgcgacggggatagtgaggtgaagaagagggacttcaccaagctggagctc 226
           ||||| | |||||| |  ||||| ||||||||||||||||||||||||||||| ||||| 
Sbjct: 222 gacgacgtccgcgatgccgatagggaggtgaagaagagggacttcaccaagctagagctg 281

                                                                       
Query: 227 aagccagatcacgtgaaccggccgctgtgggcgtgcgcagacggccgcatcttcctcgag 286
           ||||| ||||||| |||| ||||||| ||||| ||||| || |||||||||||||| |||
Sbjct: 282 aagccggatcacgcgaacaggccgctctgggcctgcgccgatggccgcatcttcctggag 341

                                                                       
Query: 287 accttctcgcctctttacaagcaggcctacgatttcctcattgccatcgccgaacctgta 346
           || || ||||| || ||||| || |||||||||||| | || || || || || ||||| 
Sbjct: 342 acgttttcgcccctatacaaacaagcctacgatttcttgatcgctattgcggagcctgtt 401

                                                                       
Query: 347 tgcaggccagaatctatgcatgaatacaatctaacgccacactcattgtatgccgcggtc 406
           |||||||||||||| ||||| || ||||||||||| || |||||| | ||||| ||||||
Sbjct: 402 tgcaggccagaatccatgcacgagtacaatctaacaccccactcactatatgctgcggtc 461

                                                    
Query: 407 tcagttggacttgagacaaacactatcattagtgtcttgag 447
           |||||||| |||||||| | |||||| || |||||| ||||
Sbjct: 462 tcagttgggcttgagactagcactataatcagtgtcatgag 502
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>ref|NM_192145.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2022

 Score =  291 bits (147), Expect = 1e-75
 Identities = 335/398 (84%), Gaps = 6/398 (1%)
 Strand = Plus / Plus

                                                                       
Query: 50  atggccggcggcgacggcgatcgcgcccgtgcgccgaagcggtacaagtcctcggcgcca 109
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| 
Sbjct: 1   atggccggcggcgacggcgatcgcgcccgcgcgccgaagcggcacaagtcctcggcgccg 60

                                                                       
Query: 110 tcgaaggcggctctggtggacgagaccgccgagatgaactacgccgacgacttcgatgac 169
           |||| | ||  |      ||||||||||||||  || ||||| |||| ||| ||||||||
Sbjct: 61  tcgaggtcgatt------gacgagaccgccgaactggactacaccgatgacgtcgatgac 114

                                                                       
Query: 170 gatgcccgcgacggggatagtgaggtgaagaagagggacttcaccaagctggagctcaag 229
           || | |||||| |  ||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 115 gacgtccgcgatgccgatagggaggtgaagaagagggacttcaccaagctagagctgaag 174

                                                                       
Query: 230 ccagatcacgtgaaccggccgctgtgggcgtgcgcagacggccgcatcttcctcgagacc 289
           || ||||||| |||| ||||||| ||||| ||||| || |||||||||||||| ||||| 
Sbjct: 175 ccggatcacgcgaacaggccgctctgggcctgcgccgatggccgcatcttcctggagacg 234

                                                                       
Query: 290 ttctcgcctctttacaagcaggcctacgatttcctcattgccatcgccgaacctgtatgc 349
           || ||||| || ||||| || |||||||||||| | || || || || || ||||| |||
Sbjct: 235 ttttcgcccctatacaaacaagcctacgatttcttgatcgctattgcggagcctgtttgc 294

                                                                       
Query: 350 aggccagaatctatgcatgaatacaatctaacgccacactcattgtatgccgcggtctca 409
           ||||||||||| ||||| || ||||||||||| || |||||| | ||||| |||||||||
Sbjct: 295 aggccagaatccatgcacgagtacaatctaacaccccactcactatatgctgcggtctca 354

                                                 
Query: 410 gttggacttgagacaaacactatcattagtgtcttgag 447
           ||||| |||||||| | |||||| || |||||| ||||
Sbjct: 355 gttgggcttgagactagcactataatcagtgtcatgag 392
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  139 bits (70), Expect = 9e-30
 Identities = 121/138 (87%)
 Strand = Plus / Plus

                                                                            
Query: 185      gatagtgaggtgaagaagagggacttcaccaagctggagctcaagccagatcacgtgaac 244
                ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||
Sbjct: 28539313 gatagggaggtgaagaagagggacttcaccaagctagagctgaagccggatcacgcgaac 28539372

                                                                            
Query: 245      cggccgctgtgggcgtgcgcagacggccgcatcttcctcgagaccttctcgcctctttac 304
                 ||||||| ||||| ||||| || |||||||||||||| ||||| || ||||| || |||
Sbjct: 28539373 aggccgctctgggcctgcgccgatggccgcatcttcctggagacgttttcgcccctatac 28539432

                                  
Query: 305      aagcaggcctacgatttc 322
                || || ||||||||||||
Sbjct: 28539433 aaacaagcctacgatttc 28539450



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                            
Query: 347      tgcaggccagaatctatgcatgaatacaatctaacgccacactcattgtatgccgcggtc 406
                |||||||||||||| ||||| || ||||||||||| || |||||| | ||||| ||||||
Sbjct: 28540836 tgcaggccagaatccatgcacgagtacaatctaacaccccactcactatatgctgcggtc 28540895

                                                         
Query: 407      tcagttggacttgagacaaacactatcattagtgtcttgag 447
                |||||||| |||||||| | |||||| || |||||| ||||
Sbjct: 28540896 tcagttgggcttgagactagcactataatcagtgtcatgag 28540936



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                                 
Query: 65       ggcgatcgcgcccgtgcgccgaagcggtacaagtcctcggcgccatcga 113
                |||||||||||||| |||||||||||| |||||||||||||||| ||||
Sbjct: 28539072 ggcgatcgcgcccgcgcgccgaagcggcacaagtcctcggcgccgtcga 28539120



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 47       gccatggccggcggcgacggcg 68
                ||||||||||||||||||||||
Sbjct: 28667983 gccatggccggcggcgacggcg 28667962



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 47       gccatggccggcggcgacgg 66
                ||||||||||||||||||||
Sbjct: 28538948 gccatggccggcggcgacgg 28538967
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>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0034C09
          Length = 170226

 Score =  139 bits (70), Expect = 9e-30
 Identities = 121/138 (87%)
 Strand = Plus / Plus

                                                                         
Query: 185   gatagtgaggtgaagaagagggacttcaccaagctggagctcaagccagatcacgtgaac 244
             ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||
Sbjct: 65752 gatagggaggtgaagaagagggacttcaccaagctagagctgaagccggatcacgcgaac 65811

                                                                         
Query: 245   cggccgctgtgggcgtgcgcagacggccgcatcttcctcgagaccttctcgcctctttac 304
              ||||||| ||||| ||||| || |||||||||||||| ||||| || ||||| || |||
Sbjct: 65812 aggccgctctgggcctgcgccgatggccgcatcttcctggagacgttttcgcccctatac 65871

                               
Query: 305   aagcaggcctacgatttc 322
             || || ||||||||||||
Sbjct: 65872 aaacaagcctacgatttc 65889



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                         
Query: 347   tgcaggccagaatctatgcatgaatacaatctaacgccacactcattgtatgccgcggtc 406
             |||||||||||||| ||||| || ||||||||||| || |||||| | ||||| ||||||
Sbjct: 67275 tgcaggccagaatccatgcacgagtacaatctaacaccccactcactatatgctgcggtc 67334

                                                      
Query: 407   tcagttggacttgagacaaacactatcattagtgtcttgag 447
             |||||||| |||||||| | |||||| || |||||| ||||
Sbjct: 67335 tcagttgggcttgagactagcactataatcagtgtcatgag 67375



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                              
Query: 65    ggcgatcgcgcccgtgcgccgaagcggtacaagtcctcggcgccatcga 113
             |||||||||||||| |||||||||||| |||||||||||||||| ||||
Sbjct: 65511 ggcgatcgcgcccgcgcgccgaagcggcacaagtcctcggcgccgtcga 65559



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    gccatggccggcggcgacgg 66
             ||||||||||||||||||||
Sbjct: 65387 gccatggccggcggcgacgg 65406
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>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431H09
          Length = 166886

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 47    gccatggccggcggcgacggcg 68
             ||||||||||||||||||||||
Sbjct: 51057 gccatggccggcggcgacggcg 51036
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>ref|NM_194793.1| Oryza sativa (japonica cultivar-group) putative cytochrome P450
            (OSJNBa0029P06.11), mRNA
          Length = 1593

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 49   catggccggcggcgacggcga 69
            |||||||||||||||||||||
Sbjct: 1326 catggccggcggcgacggcga 1346
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>gb|AC140275.3| Mus musculus BAC clone RP24-312F4 from chromosome 19, complete sequence
          Length = 173022

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 227    aagccagatcacgtgaaccgg 247
              |||||||||||||||||||||
Sbjct: 170133 aagccagatcacgtgaaccgg 170113
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>gb|AC116128.15| Mus musculus chromosome 19, clone RP23-95H3, complete sequence
          Length = 228363

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   aagccagatcacgtgaaccgg 247
             |||||||||||||||||||||
Sbjct: 61918 aagccagatcacgtgaaccgg 61938
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>gb|AC099600.5| Mus musculus chromosome 15, clone RP23-236P20, complete sequence
          Length = 146442

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 417   ttgagacaaacactatcatta 437
             |||||||||||||||||||||
Sbjct: 47583 ttgagacaaacactatcatta 47603
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>gb|AC157584.6| Mus musculus chromosome 15, clone RP24-304L10, complete sequence
          Length = 176434

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 417   ttgagacaaacactatcatta 437
             |||||||||||||||||||||
Sbjct: 35151 ttgagacaaacactatcatta 35131
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>emb|AL008631.1|HS292F10 Human DNA sequence from clone RP1-292F10 on chromosome 6q25.1-26
             Contains part of the PARK2 gene for Parkinson disease
             (autosomal recessive, juvenile) 2, parkin (PDJ, PRKN,
             AR-JP), complete sequence
          Length = 115984

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 182   ggggatagtgaggtgaagaagaggg 206
             ||||| |||||||||||||||||||
Sbjct: 53794 ggggaaagtgaggtgaagaagaggg 53818
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>emb|Z18946.1|MLCGA Mycobacteriophage L5 complete genome
          Length = 52297

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 131   gagaccgccgagatgaactac 151
             |||||||||||||||||||||
Sbjct: 45662 gagaccgccgagatgaactac 45642
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>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29
          Length = 308050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 53    gccggcggcgacggcgatcgcgcccgtgc 81
             ||||||||||||| ||| |||||||||||
Sbjct: 14330 gccggcggcgacgacgagcgcgcccgtgc 14358
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>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence
          Length = 151533

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    catggccggcggcgacggcga 69
             |||||||||||||||||||||
Sbjct: 90081 catggccggcggcgacggcga 90061
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 49      catggccggcggcgacggcga 69
               |||||||||||||||||||||
Sbjct: 2433349 catggccggcggcgacggcga 2433329
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 43      cccagccatggccggcggcgacggcgatc 71
               |||||| ||||||| ||||||||||||||
Sbjct: 5648511 cccagcgatggccgacggcgacggcgatc 5648483
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>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 43    cccagccatggccggcggcgacggcgatc 71
             |||||| ||||||| ||||||||||||||
Sbjct: 76247 cccagcgatggccgacggcgacggcgatc 76219
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 47      gccatggccggcggcgacggc 67
               |||||||||||||||||||||
Sbjct: 3312109 gccatggccggcggcgacggc 3312089
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>dbj|AK067458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107H17, full
            insert sequence
          Length = 1792

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 49   catggccggcggcgacggcga 69
            |||||||||||||||||||||
Sbjct: 1386 catggccggcggcgacggcga 1406
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>emb|AL133501.6|CNS01DV9 Human chromosome 14 DNA sequence BAC R-35B20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 181838

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   ggggatagtgaggtgaagaag 202
             |||||||||||||||||||||
Sbjct: 11882 ggggatagtgaggtgaagaag 11862
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 49      catggccggcggcgacggcga 69
               |||||||||||||||||||||
Sbjct: 2433300 catggccggcggcgacggcga 2433280
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>emb|AL162632.4|CNS01RHX Human chromosome 14 DNA sequence BAC R-454K7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 161417

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 182    ggggatagtgaggtgaagaag 202
              |||||||||||||||||||||
Sbjct: 106369 ggggatagtgaggtgaagaag 106349
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>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    cactatcattagtgtcttga 446
              ||||||||||||||||||||
Sbjct: 256867 cactatcattagtgtcttga 256886
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>ref|NM_184799.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 927

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 99  cctcggcgccatcgaaggcg 118
           ||||||||||||||||||||
Sbjct: 379 cctcggcgccatcgaaggcg 360
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 66      gcgatcgcgcccgtgcgccg 85
               ||||||||||||||||||||
Sbjct: 3394126 gcgatcgcgcccgtgcgccg 3394145
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>ref|NM_001004357.1| Mus musculus contactin associated protein-like 2 (Cntnap2),
            transcript variant 1, mRNA
          Length = 6957

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 206  gacttcaccaagctggagctcaag 229
            ||||||| ||||||||||||||||
Sbjct: 2732 gacttcatcaagctggagctcaag 2755
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>gb|AE009266.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 36 of
            187 of the complete sequence
          Length = 12013

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 137  gccgagatgaactacgccga 156
            ||||||||||||||||||||
Sbjct: 9296 gccgagatgaactacgccga 9277
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>gb|AE008345.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 149 of
            187 of the complete sequence
          Length = 11578

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 137  gccgagatgaactacgccga 156
            ||||||||||||||||||||
Sbjct: 9331 gccgagatgaactacgccga 9350
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 99       cctcggcgccatcgaaggcg 118
                ||||||||||||||||||||
Sbjct: 22066484 cctcggcgccatcgaaggcg 22066503
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>gb|BC064467.1| Mus musculus contactin associated protein-like 2, mRNA (cDNA clone
            IMAGE:6825764), partial cds
          Length = 3935

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 206  gacttcaccaagctggagctcaag 229
            ||||||| ||||||||||||||||
Sbjct: 1650 gacttcatcaagctggagctcaag 1673
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>gb|AC125401.4| Mus musculus BAC clone RP24-538H16 from chromosome 6, complete sequence
          Length = 130679

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 206    gacttcaccaagctggagctcaag 229
              ||||||| ||||||||||||||||
Sbjct: 125576 gacttcatcaagctggagctcaag 125599
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>gb|AC163637.4| Mus musculus BAC clone RP23-186O3 from chromosome 9, complete sequence
          Length = 215370

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    tcgaaggcggctctggtgga 129
              ||||||||||||||||||||
Sbjct: 180531 tcgaaggcggctctggtgga 180512
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>gb|BC108392.1| Mus musculus ribonucleoprotein, PTB-binding 1, mRNA (cDNA clone
           MGC:118403 IMAGE:6393833), complete cds
          Length = 3511

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 tcgaaggcggctctggtgga 129
           ||||||||||||||||||||
Sbjct: 367 tcgaaggcggctctggtgga 348
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>gb|BC058271.1| Mus musculus ribonucleoprotein, PTB-binding 1, mRNA (cDNA clone
           IMAGE:6490833), with apparent retained intron
          Length = 3465

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 tcgaaggcggctctggtgga 129
           ||||||||||||||||||||
Sbjct: 368 tcgaaggcggctctggtgga 349
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      ccggcggcgacggcgatcgc 73
               ||||||||||||||||||||
Sbjct: 2713513 ccggcggcgacggcgatcgc 2713494
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 50      atggccggcggcgacggcga 69
               ||||||||||||||||||||
Sbjct: 1753140 atggccggcggcgacggcga 1753159
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>ref|NM_027911.3| Mus musculus ribonucleoprotein, PTB-binding 1 (Raver1), mRNA
          Length = 3465

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 tcgaaggcggctctggtgga 129
           ||||||||||||||||||||
Sbjct: 368 tcgaaggcggctctggtgga 349
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>emb|Z68128.1|HSC1GENE H.sapiens C1 gene
          Length = 22388

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 250  gctgtgggcgtgcgcagacg 269
            ||||||||||||||||||||
Sbjct: 1189 gctgtgggcgtgcgcagacg 1170
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>gb|U52112.2| Homo sapiens chromosome X clone QLL-D9139, Qc-7G12, Qc-7C1, Qc-12B2,
             Qc-12D5, QLL-A074, Qc-9D3 map q28, complete sequence
          Length = 181343

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   gctgtgggcgtgcgcagacg 269
             ||||||||||||||||||||
Sbjct: 81400 gctgtgggcgtgcgcagacg 81419
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>gb|AY275472.1| Mus musculus RAVER1 mRNA, complete cds
          Length = 2972

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 tcgaaggcggctctggtgga 129
           ||||||||||||||||||||
Sbjct: 367 tcgaaggcggctctggtgga 348
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>gb|AE005681.1| Caulobacter crescentus CB15 section 7 of 359 of the complete genome
          Length = 10507

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 46   agccatggccggcggcgacggcga 69
            |||||| |||||||||||||||||
Sbjct: 6696 agccatcgccggcggcgacggcga 6673
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>ref|NM_136727.2| Drosophila melanogaster CAP CG18408-RA, transcript variant A (CAP),
            mRNA
          Length = 7846

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 55   cggcggcgacggcgatcgcg 74
            ||||||||||||||||||||
Sbjct: 2418 cggcggcgacggcgatcgcg 2399
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>dbj|AK138596.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330073B21 product:Hypothetical
           RNA-binding region RNP-1 (RAVER1), full insert sequence
          Length = 3452

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 tcgaaggcggctctggtgga 129
           ||||||||||||||||||||
Sbjct: 380 tcgaaggcggctctggtgga 361
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>gb|AC090354.8| Homo sapiens chromosome 18, clone RP11-735P10, complete sequence
          Length = 211162

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 403    ggtctcagttggacttgaga 422
              ||||||||||||||||||||
Sbjct: 116965 ggtctcagttggacttgaga 116984
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>dbj|AK168436.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched
           library, clone:I920018J04 product:Hypothetical
           RNA-binding region RNP-1 (RAVER1), full insert sequence
          Length = 2415

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 tcgaaggcggctctggtgga 129
           ||||||||||||||||||||
Sbjct: 389 tcgaaggcggctctggtgga 370
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>gb|AC007417.5| Drosophila melanogaster, chromosome 2R, region 47A-47B, BAC clone
             BACR48F07, complete sequence
          Length = 175681

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    cggcggcgacggcgatcgcg 74
             ||||||||||||||||||||
Sbjct: 82408 cggcggcgacggcgatcgcg 82389
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>dbj|AK039928.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430032E17 product:hypothetical
           RNA-binding region RNP-1  (RNA recognition motif)
           containing protein, full insert sequence
          Length = 902

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 tcgaaggcggctctggtgga 129
           ||||||||||||||||||||
Sbjct: 380 tcgaaggcggctctggtgga 361
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>dbj|AK084478.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:D330004I06 product:hypothetical
           Proline-rich region/RNA-binding region RNP-1  (RNA
           recognition motif) containing protein, full insert
           sequence
          Length = 2753

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 tcgaaggcggctctggtgga 129
           ||||||||||||||||||||
Sbjct: 380 tcgaaggcggctctggtgga 361
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>dbj|AK051444.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130049F14 product:hypothetical
           RNA-binding region RNP-1  (RNA recognition motif)
           containing protein, full insert sequence
          Length = 2671

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 tcgaaggcggctctggtgga 129
           ||||||||||||||||||||
Sbjct: 380 tcgaaggcggctctggtgga 361
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>dbj|AK079191.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
           enriched library, clone:9530018J06 product:hypothetical
           Proline-rich region/RNA-binding region RNP-1  (RNA
           recognition motif) containing protein, full insert
           sequence
          Length = 2405

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 tcgaaggcggctctggtgga 129
           ||||||||||||||||||||
Sbjct: 373 tcgaaggcggctctggtgga 354
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>dbj|AK004919.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched
           library, clone:1300006N24 product:hypothetical
           RNA-binding region RNP-1  (RNA recognition motif)
           containing protein, full insert sequence
          Length = 2992

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 tcgaaggcggctctggtgga 129
           ||||||||||||||||||||
Sbjct: 381 tcgaaggcggctctggtgga 362
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 99       cctcggcgccatcgaaggcg 118
                ||||||||||||||||||||
Sbjct: 22059513 cctcggcgccatcgaaggcg 22059532
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>gb|AC159138.6| Mus musculus  BAC RP23-315F23 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 180124

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 206   gacttcaccaagctggagctcaag 229
             ||||||| ||||||||||||||||
Sbjct: 73305 gacttcatcaagctggagctcaag 73328
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>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete
             sequence
          Length = 167397

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    cctcggcgccatcgaaggcg 118
             ||||||||||||||||||||
Sbjct: 81798 cctcggcgccatcgaaggcg 81779
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>ref|XM_575456.1| PREDICTED: Rattus norvegicus similar to contactin associated
            protein-like 2 isoform a (LOC500105), mRNA
          Length = 4128

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 206  gacttcaccaagctggagctcaag 229
            ||||||| ||||||||||||||||
Sbjct: 2278 gacttcatcaagctggagctcaag 2301
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>dbj|AK129232.1| Mus musculus mRNA for mKIAA0868 protein
          Length = 6957

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 206  gacttcaccaagctggagctcaag 229
            ||||||| ||||||||||||||||
Sbjct: 2732 gacttcatcaagctggagctcaag 2755
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>dbj|AK069458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020F03, full
           insert sequence
          Length = 1188

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 99  cctcggcgccatcgaaggcg 118
           ||||||||||||||||||||
Sbjct: 432 cctcggcgccatcgaaggcg 413
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>gb|AE003830.3| Drosophila melanogaster chromosome 2R, section 20 of 73 of the complete
              sequence
          Length = 240481

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     cggcggcgacggcgatcgcg 74
              ||||||||||||||||||||
Sbjct: 158564 cggcggcgacggcgatcgcg 158545
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>gb|BC083865.1| Rattus norvegicus RAVER1 homolog (human), mRNA (cDNA clone
           MGC:95117 IMAGE:7127766), complete cds
          Length = 3473

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 tcgaaggcggctctggtgga 129
           ||||||||||||||||||||
Sbjct: 373 tcgaaggcggctctggtgga 354
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     cggcgatcgcgcccgtgcgc 83
              ||||||||||||||||||||
Sbjct: 779612 cggcgatcgcgcccgtgcgc 779631
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>dbj|AB053478.1| Drosophila melanogaster dcp mRNA for DCAPL1, complete cds
          Length = 7746

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 55   cggcggcgacggcgatcgcg 74
            ||||||||||||||||||||
Sbjct: 3012 cggcggcgacggcgatcgcg 2993
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>ref|NM_001013939.1| Rattus norvegicus RAVER1 homolog (human) (Raver1h), mRNA
          Length = 3473

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 tcgaaggcggctctggtgga 129
           ||||||||||||||||||||
Sbjct: 373 tcgaaggcggctctggtgga 354


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,800,003
Number of Sequences: 3902068
Number of extensions: 2800003
Number of successful extensions: 67999
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66999
Number of HSP's gapped (non-prelim): 1000
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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